| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
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The map label for this gene is gluP [H]
Identifier: 119774540
GI number: 119774540
Start: 1702793
End: 1704040
Strand: Direct
Name: gluP [H]
Synonym: Sama_1403
Alternate gene names: 119774540
Gene position: 1702793-1704040 (Clockwise)
Preceding gene: 119774534
Following gene: 119774541
Centisome position: 39.54
GC content: 57.45
Gene sequence:
>1248_bases ATGGCAACTGTACCTATTGCCAACGCTAATCACGCAGGCGCTGCCGGCGCAGAGAACTATCGTTTTGCGCTCGGCTCACT CACCACATTGTTTTTTATGTGGGGTTTTATCACCTGTCTTAACGACATCCTTATTCCGCATCTGAAAGCCGTCTTCAGCC TGAACTATGCCCAGGCGATGTTAATTCAGTTTTGTTTCTTTGGTGCCTATTTTCTGGTGTCGGTACCGGCTGGTGTCCTG GTCAAACGTCTCGGCTACCAAAAGGGCATAGTGGTTGGCTTGTTAACCGCAGCGCTGGGCTGTGGTCTCTTTTATCCGGC GGCGGTATCGGCCACGTATGGCGTGTTTTTGGGGGCACTCTTTGTGCTTGCCAGCGGCATTACCGTGCTGCAGGTGGCGG CCAATCCCTATGTGACGGCGCTGGGACCGGTGCAAACAGCCTCAAGCCGTCTGACCCTGACCCAGGCGTTTAACTCCCTG GGTACCACCATAGCCCCGGCCTTTGGCTCTGTGCTTATCCTGTCGGTGGCCGTTGGCGCCTCTGCCGAGGCCGAAGCCGA TGCGGTCAAGCTGCCCTATCTGCTGCTGTGTGGCATGTTGATTGTGCTGGCGGTGGTGTTTGCACTGCTGAAATTGCCCC ATATCCATGACCAGGAAGATGAGGTGGCCGCGACTGGCCAGAGCGCGCTTGCCCATCGCCATCTGGTGCTCGGCGCCATA GGCATATTCGTTTATGTGGGCGGTGAAGTGGCCATTGGCAGCTTTTTGGTGAACTTTTTGGGTGAATCCCATGTGGCGGG CATGGCCGAGGCCGATGCAGCCCATTACATCGCCTTTTACTGGGGCGGTGCCATGGTGGGGCGTTTTATCGGTGCGGCCG TGATGCAAAAAGTGGATGCCGGCAAGGTGCTGGGATTCAATGCCACCATGGCGGCCCTGCTGGTACTGGTTGCCATGAAC AGCAGCGGCGCCCTGGCCATGTGGGCGATTCTGGCGGTGGGGCTGTTTAACTCCATTATGTTTCCGACCATCTTCAGTCT GGCGCTGAAAAACCTGGGCCCGGCGACAGCCCAGGGCTCGGGTATTCTGTGTCTGGCGATTGTGGGTGGCGCCCTGGTGC CTTTGCTGCAGGGGCTTCTGGCTGATTCTGTTGGCTTGTCTGCCTCATTCATTCTGCCGGTGCTCTGCTACGGCTACATC CTCTTTTATGGCCTGAAGGGCTCTGTACCCCGGGAGGCTGGTCAATGA
Upstream 100 bases:
>100_bases TTACATTAATCTAGTGGCAGAATAGCCAAAGGTCAATCGTCAAAGCGGTCGACACTGTAAATCCGAAAGAAGCAAACCCG AAAATACAAGGGGAGAACTC
Downstream 100 bases:
>100_bases AGTTTGCACTATCCAAAACTACGCTGGCCCTTGCCTGTGTCCTTGGTGGCGTCATGTCAGGCAAGGTGAGCGCAGCAGAA TCCTCATCGCTGACCGAGCG
Product: glucose/galactose transporter
Products: Proton [Cytoplasm]; L-fucose [Cytoplasm] [C]
Alternate protein names: NA
Number of amino acids: Translated: 415; Mature: 414
Protein sequence:
>415_residues MATVPIANANHAGAAGAENYRFALGSLTTLFFMWGFITCLNDILIPHLKAVFSLNYAQAMLIQFCFFGAYFLVSVPAGVL VKRLGYQKGIVVGLLTAALGCGLFYPAAVSATYGVFLGALFVLASGITVLQVAANPYVTALGPVQTASSRLTLTQAFNSL GTTIAPAFGSVLILSVAVGASAEAEADAVKLPYLLLCGMLIVLAVVFALLKLPHIHDQEDEVAATGQSALAHRHLVLGAI GIFVYVGGEVAIGSFLVNFLGESHVAGMAEADAAHYIAFYWGGAMVGRFIGAAVMQKVDAGKVLGFNATMAALLVLVAMN SSGALAMWAILAVGLFNSIMFPTIFSLALKNLGPATAQGSGILCLAIVGGALVPLLQGLLADSVGLSASFILPVLCYGYI LFYGLKGSVPREAGQ
Sequences:
>Translated_415_residues MATVPIANANHAGAAGAENYRFALGSLTTLFFMWGFITCLNDILIPHLKAVFSLNYAQAMLIQFCFFGAYFLVSVPAGVL VKRLGYQKGIVVGLLTAALGCGLFYPAAVSATYGVFLGALFVLASGITVLQVAANPYVTALGPVQTASSRLTLTQAFNSL GTTIAPAFGSVLILSVAVGASAEAEADAVKLPYLLLCGMLIVLAVVFALLKLPHIHDQEDEVAATGQSALAHRHLVLGAI GIFVYVGGEVAIGSFLVNFLGESHVAGMAEADAAHYIAFYWGGAMVGRFIGAAVMQKVDAGKVLGFNATMAALLVLVAMN SSGALAMWAILAVGLFNSIMFPTIFSLALKNLGPATAQGSGILCLAIVGGALVPLLQGLLADSVGLSASFILPVLCYGYI LFYGLKGSVPREAGQ >Mature_414_residues ATVPIANANHAGAAGAENYRFALGSLTTLFFMWGFITCLNDILIPHLKAVFSLNYAQAMLIQFCFFGAYFLVSVPAGVLV KRLGYQKGIVVGLLTAALGCGLFYPAAVSATYGVFLGALFVLASGITVLQVAANPYVTALGPVQTASSRLTLTQAFNSLG TTIAPAFGSVLILSVAVGASAEAEADAVKLPYLLLCGMLIVLAVVFALLKLPHIHDQEDEVAATGQSALAHRHLVLGAIG IFVYVGGEVAIGSFLVNFLGESHVAGMAEADAAHYIAFYWGGAMVGRFIGAAVMQKVDAGKVLGFNATMAALLVLVAMNS SGALAMWAILAVGLFNSIMFPTIFSLALKNLGPATAQGSGILCLAIVGGALVPLLQGLLADSVGLSASFILPVLCYGYIL FYGLKGSVPREAGQ
Specific function: Intake of glucose and galactose (Potential) [H]
COG id: COG0738
COG function: function code G; Fucose permease
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein (Probable) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the major facilitator superfamily. FHS transporter (TC 2.A.1.7) family [H]
Homologues:
Organism=Escherichia coli, GI1789166, Length=422, Percent_Identity=34.8341232227488, Blast_Score=231, Evalue=8e-62,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR005964 - InterPro: IPR011701 - InterPro: IPR016196 [H]
Pfam domain/function: PF07690 MFS_1 [H]
EC number: NA
Molecular weight: Translated: 42850; Mature: 42719
Theoretical pI: Translated: 7.20; Mature: 7.20
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 4.1 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 3.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MATVPIANANHAGAAGAENYRFALGSLTTLFFMWGFITCLNDILIPHLKAVFSLNYAQAM CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LIQFCFFGAYFLVSVPAGVLVKRLGYQKGIVVGLLTAALGCGLFYPAAVSATYGVFLGAL HHHHHHHHHHHHHHCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH FVLASGITVLQVAANPYVTALGPVQTASSRLTLTQAFNSLGTTIAPAFGSVLILSVAVGA HHHHCCCCEEEEECCCCEEECCCHHHCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCC SAEAEADAVKLPYLLLCGMLIVLAVVFALLKLPHIHDQEDEVAATGQSALAHRHLVLGAI CCCCCCHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCHHHHHHHHHHHHHH GIFVYVGGEVAIGSFLVNFLGESHVAGMAEADAAHYIAFYWGGAMVGRFIGAAVMQKVDA HHHHHCCCHHHHHHHHHHHHCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC GKVLGFNATMAALLVLVAMNSSGALAMWAILAVGLFNSIMFPTIFSLALKNLGPATAQGS CCEECCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC GILCLAIVGGALVPLLQGLLADSVGLSASFILPVLCYGYILFYGLKGSVPREAGQ CEEHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCC >Mature Secondary Structure ATVPIANANHAGAAGAENYRFALGSLTTLFFMWGFITCLNDILIPHLKAVFSLNYAQAM CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LIQFCFFGAYFLVSVPAGVLVKRLGYQKGIVVGLLTAALGCGLFYPAAVSATYGVFLGAL HHHHHHHHHHHHHHCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH FVLASGITVLQVAANPYVTALGPVQTASSRLTLTQAFNSLGTTIAPAFGSVLILSVAVGA HHHHCCCCEEEEECCCCEEECCCHHHCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCC SAEAEADAVKLPYLLLCGMLIVLAVVFALLKLPHIHDQEDEVAATGQSALAHRHLVLGAI CCCCCCHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCHHHHHHHHHHHHHH GIFVYVGGEVAIGSFLVNFLGESHVAGMAEADAAHYIAFYWGGAMVGRFIGAAVMQKVDA HHHHHCCCHHHHHHHHHHHHCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC GKVLGFNATMAALLVLVAMNSSGALAMWAILAVGLFNSIMFPTIFSLALKNLGPATAQGS CCEECCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC GILCLAIVGGALVPLLQGLLADSVGLSASFILPVLCYGYILFYGLKGSVPREAGQ CEEHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: Proton [Periplasm]; L-fucose [Periplasm] [C]
Specific reaction: Proton [Periplasm] + L-fucose [Periplasm] = Proton [Cytoplasm] + L-fucose [Cytoplasm] [C]
General reaction: Permease [C]
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 9168605 [H]