| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
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The map label for this gene is bglX [H]
Identifier: 119774541
GI number: 119774541
Start: 1704037
End: 1706616
Strand: Direct
Name: bglX [H]
Synonym: Sama_1404
Alternate gene names: 119774541
Gene position: 1704037-1706616 (Clockwise)
Preceding gene: 119774540
Following gene: 119774542
Centisome position: 39.57
GC content: 58.14
Gene sequence:
>2580_bases ATGAAGTTTGCACTATCCAAAACTACGCTGGCCCTTGCCTGTGTCCTTGGTGGCGTCATGTCAGGCAAGGTGAGCGCAGC AGAATCCTCATCGCTGACCGAGCGGGATGTTAATCGCTGGCCAGAGGCCGTTTACCATACCCCAATTCAGGCGGATGTTG AGGCAAAGGTTCATAAGCTGCTGGCCGCAATGACACTTGAGCAAAAAGTGGCGCAAATTATCCAGCCGGAAATTCGCGAC TTTGGCGTTGAGGATATGCGTCGTTATGGCTTTGGCTCCTTCCTCAATGGTGGCGGTTCATTCCCCGGTAATAATAACAG GGCAAAGGCGGCCGATTGGGTGGCGCTGGCAGACCAGATGTACCACGCCGCCATGGATGACAGTATCGATGGAATTGCCA TTCCGCCCATGTGGGGCACAGATGCCGTTCACGGTCATGGCAATGTGTTTGGCGCCACCTTGTTCCCCCATAACATTGGC TTGGGTGCAACGCAAAACCCCCAGCTGATTAAAGCCATCGCGGCGGCCACGGCCAAAGAAGTGCGCGCAACCGGGATCGA CTGGGTGTTTGCGCCTACCGTTGCTCTGGTGGATAACCTGCGCTGGGGTCGAACTTATGAAGGCTATGCCCGGGATCCTG AGCTGATTGAACGCTACGCCGAGGCCTTTGTCGATGGCATGCAGGGCGAGGGCAAAAGTTGGCTGGGTGACGATTACACC CTGGCCACTGCCAAACACTTTATCGGCGATGGCGGCACTGATAATGGTGACGATCGCGGTGACACCAGGGTAGATGAAAA CACTCTGATAGCCCGCCATGGTCAGGGTTACGTGGGTGCACTGGGTCATGGCGTGCAAACCGTGATGGCCTCTTTTAACA GTTGGAACGGCGAAAAGCTCCACGGCAGCAAATACCTGCTCACCGATGTGCTCAAAGAGCGCATGGGATTTGATGGGGTT GTGGTTGGCGATTGGCTCGGCCATGGCTTTGTACCGGGCTGCAGTTACGAGCACTGCGCTGAAGCCGTGAATGCCGGGGT GGACATACTGATGGCCCCGGGGGACAGCTGGAAAGCACTGTACGCCAATACCATCGCGGATGTGAAATCCGGGGTCTTGC CGCTTTCCCGTCTTGATGATGCGGTGAAGCGCGTGTTGCGGGTAAAGCTGCGTGCGGGTCTGTTTGATAACAAGGCGCCG TCAGCGAACCCCTATGCCGGTAAACAGGAATGGATAGGGCATCCAGAGCACCGCGCCATTGCCCGTCAGGCGGTTGCCGA GTCTTTGGTGCTGCTCAAAAACAACCGCCCAGCCAATGGGGCGCGCCCTGTGCTGCCCATTGCCGCCAATGCCAGGGTCT TGGTGGTGGGCGAAGGCGCTGACAGCATTCCACAGCAGTCGGGTGGTTGGAGCATGACCTGGCAGGGGACCGAAGTCACC AATGCGGACTTCCCCGGTGCCACCAGTATTTTTGCCGGCATCAAGGCAGCGCTGAACGCCGCTGGCGGTGATGCTCTCCT GAGCTCCGATGGCACTATCCCCGTGGGATTCAAACCCGATGTGGTGATAGCCGTCTATGGTGAGCAACCCTACGCCGAAG GCAACGGCGATTTGGATAACCTCGAGTATCAGCGCGGTGACAAGCGTTCTCTGGCCATGCTCAGCGCACTGAAGGCAACC GGATTACCCCTGGTGTCCGTGGTTTTGTCCGGCAGACCCCTGTGGATGAACCCTGAAATCAACGTATCGGATGCCTTTGT GGCCGCCTGGCTGCCCGGCAGCGAAGGTGCGGGTGTGGCAGATGTGCTGATTGGCGATAAAAACGCTCAGCCCCGAGCCG ATTTCAAGGGGCGCATGCCATTCCCATGGCCCGCCACTCCATCAGCCGATGGTTTTGTGTCTGATACGGGCAGTGCAGGG CAAGACCAGCCCAAGCCCCTGTTCAGCCTCTGGCAGGGCTTTGATTATCGGTCTGATGCCACGCTTGCCGCACTCAGCGA GGACAACGGCAGCTCGGAGGCAGACAACCGACTGGCGATTTTCGATAAAGCCATCAAGGCGCCCTGGCATTTGGCGGTAG GAGACGATAAGGGACTGCACCGTGTTGGTCCCGGTCTTTGGCAGCAGGGTCCATGGGCCGTGCGCAGTGTGAATCGCATT GTGCAGGAAGATGCCCGCCGGTTTGAGTTCGGCGCCGCCGGTACCCTCAGCTTCCGTGATGATTTTACTTTGGACTTGCG CCGCTTTGCGCCCGACTCATCACTGCTTTCTTTCGATATTGCCCTGACGGCCTTGCCCGGAAAGTTGCAACTGTCGATGG TCTGTGAAGGCGGCTGTCGTCAAGCCGTGGAGTTGTCCGGGCAGTTAAAAGCCGATGGTCAGTGGCAGCGTGTTGAAGTG CCGCTGTCATGTTTCGGAGTAACGGCTGATGAGCTGGCACGCACTTTCAGCCCCATGACCATGTCACTTCCTCAGGGGGG CACCCTGACGCTGGCGAATGTCAGCCTCGAAGGAATGGTCCAACGGGATGCGTCTGCCAAGGCAGTGGAATGTGGATTGC CGCCGGTCAGCGACAAATGA
Upstream 100 bases:
>100_bases ATTCTGTTGGCTTGTCTGCCTCATTCATTCTGCCGGTGCTCTGCTACGGCTACATCCTCTTTTATGGCCTGAAGGGCTCT GTACCCCGGGAGGCTGGTCA
Downstream 100 bases:
>100_bases CAGCACTGAGCATGACCGCGACATGCCGCGCTGAGATGAAAAACACCATCAACATGGAGAATGAGATGTATCGCTCTGGG ATTGATTTGGGCGGCACCAA
Product: beta-glucosidase
Products: NA
Alternate protein names: Beta-D-glucoside glucohydrolase; Cellobiase; Gentiobiase [H]
Number of amino acids: Translated: 859; Mature: 859
Protein sequence:
>859_residues MKFALSKTTLALACVLGGVMSGKVSAAESSSLTERDVNRWPEAVYHTPIQADVEAKVHKLLAAMTLEQKVAQIIQPEIRD FGVEDMRRYGFGSFLNGGGSFPGNNNRAKAADWVALADQMYHAAMDDSIDGIAIPPMWGTDAVHGHGNVFGATLFPHNIG LGATQNPQLIKAIAAATAKEVRATGIDWVFAPTVALVDNLRWGRTYEGYARDPELIERYAEAFVDGMQGEGKSWLGDDYT LATAKHFIGDGGTDNGDDRGDTRVDENTLIARHGQGYVGALGHGVQTVMASFNSWNGEKLHGSKYLLTDVLKERMGFDGV VVGDWLGHGFVPGCSYEHCAEAVNAGVDILMAPGDSWKALYANTIADVKSGVLPLSRLDDAVKRVLRVKLRAGLFDNKAP SANPYAGKQEWIGHPEHRAIARQAVAESLVLLKNNRPANGARPVLPIAANARVLVVGEGADSIPQQSGGWSMTWQGTEVT NADFPGATSIFAGIKAALNAAGGDALLSSDGTIPVGFKPDVVIAVYGEQPYAEGNGDLDNLEYQRGDKRSLAMLSALKAT GLPLVSVVLSGRPLWMNPEINVSDAFVAAWLPGSEGAGVADVLIGDKNAQPRADFKGRMPFPWPATPSADGFVSDTGSAG QDQPKPLFSLWQGFDYRSDATLAALSEDNGSSEADNRLAIFDKAIKAPWHLAVGDDKGLHRVGPGLWQQGPWAVRSVNRI VQEDARRFEFGAAGTLSFRDDFTLDLRRFAPDSSLLSFDIALTALPGKLQLSMVCEGGCRQAVELSGQLKADGQWQRVEV PLSCFGVTADELARTFSPMTMSLPQGGTLTLANVSLEGMVQRDASAKAVECGLPPVSDK
Sequences:
>Translated_859_residues MKFALSKTTLALACVLGGVMSGKVSAAESSSLTERDVNRWPEAVYHTPIQADVEAKVHKLLAAMTLEQKVAQIIQPEIRD FGVEDMRRYGFGSFLNGGGSFPGNNNRAKAADWVALADQMYHAAMDDSIDGIAIPPMWGTDAVHGHGNVFGATLFPHNIG LGATQNPQLIKAIAAATAKEVRATGIDWVFAPTVALVDNLRWGRTYEGYARDPELIERYAEAFVDGMQGEGKSWLGDDYT LATAKHFIGDGGTDNGDDRGDTRVDENTLIARHGQGYVGALGHGVQTVMASFNSWNGEKLHGSKYLLTDVLKERMGFDGV VVGDWLGHGFVPGCSYEHCAEAVNAGVDILMAPGDSWKALYANTIADVKSGVLPLSRLDDAVKRVLRVKLRAGLFDNKAP SANPYAGKQEWIGHPEHRAIARQAVAESLVLLKNNRPANGARPVLPIAANARVLVVGEGADSIPQQSGGWSMTWQGTEVT NADFPGATSIFAGIKAALNAAGGDALLSSDGTIPVGFKPDVVIAVYGEQPYAEGNGDLDNLEYQRGDKRSLAMLSALKAT GLPLVSVVLSGRPLWMNPEINVSDAFVAAWLPGSEGAGVADVLIGDKNAQPRADFKGRMPFPWPATPSADGFVSDTGSAG QDQPKPLFSLWQGFDYRSDATLAALSEDNGSSEADNRLAIFDKAIKAPWHLAVGDDKGLHRVGPGLWQQGPWAVRSVNRI VQEDARRFEFGAAGTLSFRDDFTLDLRRFAPDSSLLSFDIALTALPGKLQLSMVCEGGCRQAVELSGQLKADGQWQRVEV PLSCFGVTADELARTFSPMTMSLPQGGTLTLANVSLEGMVQRDASAKAVECGLPPVSDK >Mature_859_residues MKFALSKTTLALACVLGGVMSGKVSAAESSSLTERDVNRWPEAVYHTPIQADVEAKVHKLLAAMTLEQKVAQIIQPEIRD FGVEDMRRYGFGSFLNGGGSFPGNNNRAKAADWVALADQMYHAAMDDSIDGIAIPPMWGTDAVHGHGNVFGATLFPHNIG LGATQNPQLIKAIAAATAKEVRATGIDWVFAPTVALVDNLRWGRTYEGYARDPELIERYAEAFVDGMQGEGKSWLGDDYT LATAKHFIGDGGTDNGDDRGDTRVDENTLIARHGQGYVGALGHGVQTVMASFNSWNGEKLHGSKYLLTDVLKERMGFDGV VVGDWLGHGFVPGCSYEHCAEAVNAGVDILMAPGDSWKALYANTIADVKSGVLPLSRLDDAVKRVLRVKLRAGLFDNKAP SANPYAGKQEWIGHPEHRAIARQAVAESLVLLKNNRPANGARPVLPIAANARVLVVGEGADSIPQQSGGWSMTWQGTEVT NADFPGATSIFAGIKAALNAAGGDALLSSDGTIPVGFKPDVVIAVYGEQPYAEGNGDLDNLEYQRGDKRSLAMLSALKAT GLPLVSVVLSGRPLWMNPEINVSDAFVAAWLPGSEGAGVADVLIGDKNAQPRADFKGRMPFPWPATPSADGFVSDTGSAG QDQPKPLFSLWQGFDYRSDATLAALSEDNGSSEADNRLAIFDKAIKAPWHLAVGDDKGLHRVGPGLWQQGPWAVRSVNRI VQEDARRFEFGAAGTLSFRDDFTLDLRRFAPDSSLLSFDIALTALPGKLQLSMVCEGGCRQAVELSGQLKADGQWQRVEV PLSCFGVTADELARTFSPMTMSLPQGGTLTLANVSLEGMVQRDASAKAVECGLPPVSDK
Specific function: Unknown
COG id: COG1472
COG function: function code G; Beta-glucosidase-related glycosidases
Gene ontology:
Cell location: Periplasm [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the glycosyl hydrolase 3 family [H]
Homologues:
Organism=Escherichia coli, GI1788453, Length=622, Percent_Identity=28.2958199356913, Blast_Score=187, Evalue=3e-48,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR019800 - InterPro: IPR002772 - InterPro: IPR001764 - InterPro: IPR017853 [H]
Pfam domain/function: PF00933 Glyco_hydro_3; PF01915 Glyco_hydro_3_C [H]
EC number: =3.2.1.21 [H]
Molecular weight: Translated: 91698; Mature: 91698
Theoretical pI: Translated: 5.08; Mature: 5.08
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKFALSKTTLALACVLGGVMSGKVSAAESSSLTERDVNRWPEAVYHTPIQADVEAKVHKL CCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHCCHHHCCCCCCCHHHHHHHHH LAAMTLEQKVAQIIQPEIRDFGVEDMRRYGFGSFLNGGGSFPGNNNRAKAADWVALADQM HHHHHHHHHHHHHHCHHHHHCCHHHHHHHCCCHHCCCCCCCCCCCCCCCHHHHHHHHHHH YHAAMDDSIDGIAIPPMWGTDAVHGHGNVFGATLFPHNIGLGATQNPQLIKAIAAATAKE HHHHHCCCCCCEECCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHH VRATGIDWVFAPTVALVDNLRWGRTYEGYARDPELIERYAEAFVDGMQGEGKSWLGDDYT HHHCCCCEEHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCEE LATAKHFIGDGGTDNGDDRGDTRVDENTLIARHGQGYVGALGHGVQTVMASFNSWNGEKL HHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHCCCCCCEE HGSKYLLTDVLKERMGFDGVVVGDWLGHGFVPGCSYEHCAEAVNAGVDILMAPGDSWKAL CCCHHHHHHHHHHHCCCCCEEEECHHCCCCCCCCCHHHHHHHHHCCCEEEECCCCCCHHH YANTIADVKSGVLPLSRLDDAVKRVLRVKLRAGLFDNKAPSANPYAGKQEWIGHPEHRAI HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHCCCCHHHHH ARQAVAESLVLLKNNRPANGARPVLPIAANARVLVVGEGADSIPQQSGGWSMTWQGTEVT HHHHHHHHHHEEECCCCCCCCCCEEEEECCCEEEEEECCCCCCCCCCCCEEEEECCCEEC NADFPGATSIFAGIKAALNAAGGDALLSSDGTIPVGFKPDVVIAVYGEQPYAEGNGDLDN CCCCCCHHHHHHHHHHHHHCCCCCEEECCCCCEEECCCCCEEEEEECCCCCCCCCCCCCC LEYQRGDKRSLAMLSALKATGLPLVSVVLSGRPLWMNPEINVSDAFVAAWLPGSEGAGVA CHHCCCCHHHHHHHHHHHHCCCHHHHHHHCCCCEEECCCCCCCCCEEEEECCCCCCCCEE DVLIGDKNAQPRADFKGRMPFPWPATPSADGFVSDTGSAGQDQPKPLFSLWQGFDYRSDA EEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCC TLAALSEDNGSSEADNRLAIFDKAIKAPWHLAVGDDKGLHRVGPGLWQQGPWAVRSVNRI EEEEEECCCCCCCCCCEEEEHHHHHCCCEEEEECCCCCCHHCCCCCCCCCCHHHHHHHHH VQEDARRFEFGAAGTLSFRDDFTLDLRRFAPDSSLLSFDIALTALPGKLQLSMVCEGGCR HHHHHHHEECCCCEEEECCCCCEEHHHHCCCCCCEEEEEEEEEECCCCEEEEEEECCCCH QAVELSGQLKADGQWQRVEVPLSCFGVTADELARTFSPMTMSLPQGGTLTLANVSLEGMV HHHHCCCCCCCCCCEEEEECCHHHCCCCHHHHHHHCCCCEEECCCCCEEEEEECCCHHHH QRDASAKAVECGLPPVSDK HCCCCCCEEECCCCCCCCC >Mature Secondary Structure MKFALSKTTLALACVLGGVMSGKVSAAESSSLTERDVNRWPEAVYHTPIQADVEAKVHKL CCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHCCHHHCCCCCCCHHHHHHHHH LAAMTLEQKVAQIIQPEIRDFGVEDMRRYGFGSFLNGGGSFPGNNNRAKAADWVALADQM HHHHHHHHHHHHHHCHHHHHCCHHHHHHHCCCHHCCCCCCCCCCCCCCCHHHHHHHHHHH YHAAMDDSIDGIAIPPMWGTDAVHGHGNVFGATLFPHNIGLGATQNPQLIKAIAAATAKE HHHHHCCCCCCEECCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHH VRATGIDWVFAPTVALVDNLRWGRTYEGYARDPELIERYAEAFVDGMQGEGKSWLGDDYT HHHCCCCEEHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCEE LATAKHFIGDGGTDNGDDRGDTRVDENTLIARHGQGYVGALGHGVQTVMASFNSWNGEKL HHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHCCCCCCEE HGSKYLLTDVLKERMGFDGVVVGDWLGHGFVPGCSYEHCAEAVNAGVDILMAPGDSWKAL CCCHHHHHHHHHHHCCCCCEEEECHHCCCCCCCCCHHHHHHHHHCCCEEEECCCCCCHHH YANTIADVKSGVLPLSRLDDAVKRVLRVKLRAGLFDNKAPSANPYAGKQEWIGHPEHRAI HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHCCCCHHHHH ARQAVAESLVLLKNNRPANGARPVLPIAANARVLVVGEGADSIPQQSGGWSMTWQGTEVT HHHHHHHHHHEEECCCCCCCCCCEEEEECCCEEEEEECCCCCCCCCCCCEEEEECCCEEC NADFPGATSIFAGIKAALNAAGGDALLSSDGTIPVGFKPDVVIAVYGEQPYAEGNGDLDN CCCCCCHHHHHHHHHHHHHCCCCCEEECCCCCEEECCCCCEEEEEECCCCCCCCCCCCCC LEYQRGDKRSLAMLSALKATGLPLVSVVLSGRPLWMNPEINVSDAFVAAWLPGSEGAGVA CHHCCCCHHHHHHHHHHHHCCCHHHHHHHCCCCEEECCCCCCCCCEEEEECCCCCCCCEE DVLIGDKNAQPRADFKGRMPFPWPATPSADGFVSDTGSAGQDQPKPLFSLWQGFDYRSDA EEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCC TLAALSEDNGSSEADNRLAIFDKAIKAPWHLAVGDDKGLHRVGPGLWQQGPWAVRSVNRI EEEEEECCCCCCCCCCEEEEHHHHHCCCEEEEECCCCCCHHCCCCCCCCCCHHHHHHHHH VQEDARRFEFGAAGTLSFRDDFTLDLRRFAPDSSLLSFDIALTALPGKLQLSMVCEGGCR HHHHHHHEECCCCEEEECCCCCEEHHHHCCCCCCEEEEEEEEEECCCCEEEEEEECCCCH QAVELSGQLKADGQWQRVEVPLSCFGVTADELARTFSPMTMSLPQGGTLTLANVSLEGMV HHHHCCCCCCCCCCEEEEECCHHHCCCCHHHHHHHCCCCEEECCCCCEEEEEECCCHHHH QRDASAKAVECGLPPVSDK HCCCCCCEEECCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9278503 [H]