| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
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The map label for this gene is bglA [H]
Identifier: 119774533
GI number: 119774533
Start: 1688784
End: 1691438
Strand: Direct
Name: bglA [H]
Synonym: Sama_1396
Alternate gene names: 119774533
Gene position: 1688784-1691438 (Clockwise)
Preceding gene: 119774532
Following gene: 119774534
Centisome position: 39.22
GC content: 56.65
Gene sequence:
>2655_bases ATGATGATGAAGAATTCTGGAACGAGCAAGTACCTTTCCCTTGGACTGCTTGCGGCGGCGCTGCAGGGGTGCGGGGGGGA TACCAATACCAGCACCGATTTGGGCTCGGTCAACCTTGAAGGTCCGGCAACCGGTTGGGAGCTGGTGTGGAGCGACGAGT TTGACGGCAGCAGCATAGACGCGGCCAAGTGGGCGCATGACGTGGATTGTGCCGGAGGCGGAAATCAGGAGTCTCAATGC TATACCGCAGATGAAGCTAACTCCTTCGTTGCCGATGGTATGCTGAACATAGTGGCGCTGAAGGCGCCCGAGGGTGCTGA AAAGCCTTATACCTCAGCAAGACTGACAACCAAAGGCAAGGCGGATTTCACTTATGGCCGCTTTGAAATGCGGGCGAAAT TACCGTCGGGGCAGGGCAGCTGGCCTGCCTTCTGGATGCTGCCTACCGACAATGTCTACGGCATCTGGCCCCGAAGCGGC GAAATCGATATTGTGGAAGCGGTAAATCTTAAAGCCGCCACCGTAGAGGGAACCCCTGAAGCCTACGTCCACGGAACCCT TCACTACGGCCGTGAGTGGCCCAAGAACGAGCAATCAGGCAAAGCCTATCTGCTGCCCAATGGCGTCAATCCTGCCGATG ATTTTCATACCTATGCCATTGAGTGGCAGCAGGGGGAAATCCGCTGGTATGTGGACGACTACCTCTATGCCACTCAGCGG CGCTCCGAACTGAGGTACAACTCCAAGGGGCAGGCGGTTGGTCTGGCTCACAAAGGCTGGTTTACCGAATATTACGATCA ATCCAGTGGCGACCTGCAGCTCAGTTGGACAGATGCGCCATTTGATGAAAAATTCCATCTCATCGTTAACTTCGCTGTGG GTGGCAACTGGCCAGCCTCGGTAAACGAAACCGGTATCGACGATACCGCCTTTAACGAGAACAACAGGTATCAAATTGAC TTTGTCAGGGTTTATGAATGTGCTGCCAACCCTGATACCGGCAAGGGCTGTGAGACTGTGCGCCCGGGCTATGACAACCC AGATGATGCGCTGGTGGAAGGTAAAGCCCCCGTGCCTGTACCGCCTTCTGATGGTACGCCAAAAGATCTGCTGATTTTTG ACAGCACCCCCAACCCCAACTGGGCTGCGTGGGATTGCTGCGGTGGCTCTACGCCAAGCCTGGTGGAAGATGCCGACAAG GGCGCCGTATATCGCTTTGTGGTAGGCGACAGCCCAACAGTCAACGGCTTTATCAGCCGCGCGGCCTTTATTACCGATCC GGCTGGCGTGCCCAGTCCTTTTGATGCAGCGCCCATTGAGGCAAGCGGCGTATTAAGCTTTGCCATGAAGGTGGTGAGTG CCCCGTCAAATGCAGACTCGACCTGGATGATGAAGGTCGAAAGCAACGAAGGTGCGACCGCCGTTGAACTGCCGCTCACC GCAAGCAGTGAAGGTGTGGCACCGGCAGTGGGCCAGTGGCAAACCTTCAGCTTCCCGCTGTCTGAACTTGCTGCCAAGGG CCTGGACTTGTCTGCCATTGATGTGGTGATGGTGTTCCCCGCTTGGGGCACCGGCAGCGGCGCCGAGTATCTGTTGGATG AAGTGAAGATTGCTCGTCCCGATACCAGTTTGCCGTCACTGACCATCTTTACCGACAACGAGAACCCCGATTGGCCGATG TGGGACTGCTGTGGTGGCTCGACCCCGCAAGTGGTATCCGATGATGCAGAGCACGGCATAGTGTCCGAGTTCAGCATTGG TGCCAGCCCGACGGTGATGGGTTATATCAATCGCACCGAGCTGGGTGGCGGTGGCAATCCCTTCGATGCCTCATCCCTGT ATGACAATGGCGTAGTGCAATTTGACCTTAAGGTCGTCACCGCGCCCAATACCGTCGATGCGCCCTGGCTGTTCAAGGTG GAATCCAACAATGCGGCTTCTGCGGTGGAACTGCCGTTGACCAGCAGCGTTGAAGGCATGGCGCCATCCGCGCAGTGGCA AACCTTCAGCTTCCGCCTGTCGACCCTGGCCGATGCGGGATTGGATTTAAGCGCCATCGATGTGTTGATGGTATTCCCTG CCTGGGGACAGGGTGAAGGCGCTGTCTATCGCATTGATAACGTTAAAATCCATCAACCCGGATCCGGCGGCTCCATGAAT GCCCTGAGTCTGTTTGCCGACACAGTGGCCGATGCCTGGTCAATTTGGGATTGCTGCGGCGGCTCAACCCCTACGGTTGA GGCCGATGATGCTGCCCATGGCGCCGTGGCTGAGTATGTGATTGGCGCCCAGCCAACTGTGGTGGGCTTCTTCGCCGATG ATGGTGTCTATTACGATGCATCCGCTGCTGTAGAGACCGGCGTAGTGCGGTTTGAAATGAAGCTGGTTTCTGCACCAAAT GACCCCGGCTCGGTCTGGAAGTTCAAGATTGAATCCGGTGATGCCAGTACTGCCGTTGAGCTTAACCTGACCGACAGTGT CGAAGGCAGTGCACCTGTTGTAGGCCAGTGGCAGACCTATACTTTCCCGCTTAAGACCTTGACTGACATGGGGCTGGATG CCAGCGCCATTGATGTGGTGATGGTATTCCCTGCGTGGGGTACCGGTGAGGGGGCGGTGTTCCGTTTGGATAACGCACTG ATAGGCACGCCCTGA
Upstream 100 bases:
>100_bases ACAAATGTAAGCGCTTACATTTGGTTTCAAAAGGAAACATCGGCAGTAGTTAGCGCTGACATGGCTATATTTATCCATAA AAACAGTGGGTTGGGCTGCA
Downstream 100 bases:
>100_bases TACACCTAACCCTTTGGCATGAATGGGAATGGCCCGCCGGACCTTGCGATTTGTCCGGTGTGGCCGCAGCGAAAGAATAA GAGGCAATTATGTTAGATAA
Product: glucan endo-1,3-beta-D-glucosidase
Products: NA
Alternate protein names: 1,3-1,4-beta-D-glucan 4-glucanohydrolase; Endo-beta-1,3-1,4 glucanase; Lichenase [H]
Number of amino acids: Translated: 884; Mature: 884
Protein sequence:
>884_residues MMMKNSGTSKYLSLGLLAAALQGCGGDTNTSTDLGSVNLEGPATGWELVWSDEFDGSSIDAAKWAHDVDCAGGGNQESQC YTADEANSFVADGMLNIVALKAPEGAEKPYTSARLTTKGKADFTYGRFEMRAKLPSGQGSWPAFWMLPTDNVYGIWPRSG EIDIVEAVNLKAATVEGTPEAYVHGTLHYGREWPKNEQSGKAYLLPNGVNPADDFHTYAIEWQQGEIRWYVDDYLYATQR RSELRYNSKGQAVGLAHKGWFTEYYDQSSGDLQLSWTDAPFDEKFHLIVNFAVGGNWPASVNETGIDDTAFNENNRYQID FVRVYECAANPDTGKGCETVRPGYDNPDDALVEGKAPVPVPPSDGTPKDLLIFDSTPNPNWAAWDCCGGSTPSLVEDADK GAVYRFVVGDSPTVNGFISRAAFITDPAGVPSPFDAAPIEASGVLSFAMKVVSAPSNADSTWMMKVESNEGATAVELPLT ASSEGVAPAVGQWQTFSFPLSELAAKGLDLSAIDVVMVFPAWGTGSGAEYLLDEVKIARPDTSLPSLTIFTDNENPDWPM WDCCGGSTPQVVSDDAEHGIVSEFSIGASPTVMGYINRTELGGGGNPFDASSLYDNGVVQFDLKVVTAPNTVDAPWLFKV ESNNAASAVELPLTSSVEGMAPSAQWQTFSFRLSTLADAGLDLSAIDVLMVFPAWGQGEGAVYRIDNVKIHQPGSGGSMN ALSLFADTVADAWSIWDCCGGSTPTVEADDAAHGAVAEYVIGAQPTVVGFFADDGVYYDASAAVETGVVRFEMKLVSAPN DPGSVWKFKIESGDASTAVELNLTDSVEGSAPVVGQWQTYTFPLKTLTDMGLDASAIDVVMVFPAWGTGEGAVFRLDNAL IGTP
Sequences:
>Translated_884_residues MMMKNSGTSKYLSLGLLAAALQGCGGDTNTSTDLGSVNLEGPATGWELVWSDEFDGSSIDAAKWAHDVDCAGGGNQESQC YTADEANSFVADGMLNIVALKAPEGAEKPYTSARLTTKGKADFTYGRFEMRAKLPSGQGSWPAFWMLPTDNVYGIWPRSG EIDIVEAVNLKAATVEGTPEAYVHGTLHYGREWPKNEQSGKAYLLPNGVNPADDFHTYAIEWQQGEIRWYVDDYLYATQR RSELRYNSKGQAVGLAHKGWFTEYYDQSSGDLQLSWTDAPFDEKFHLIVNFAVGGNWPASVNETGIDDTAFNENNRYQID FVRVYECAANPDTGKGCETVRPGYDNPDDALVEGKAPVPVPPSDGTPKDLLIFDSTPNPNWAAWDCCGGSTPSLVEDADK GAVYRFVVGDSPTVNGFISRAAFITDPAGVPSPFDAAPIEASGVLSFAMKVVSAPSNADSTWMMKVESNEGATAVELPLT ASSEGVAPAVGQWQTFSFPLSELAAKGLDLSAIDVVMVFPAWGTGSGAEYLLDEVKIARPDTSLPSLTIFTDNENPDWPM WDCCGGSTPQVVSDDAEHGIVSEFSIGASPTVMGYINRTELGGGGNPFDASSLYDNGVVQFDLKVVTAPNTVDAPWLFKV ESNNAASAVELPLTSSVEGMAPSAQWQTFSFRLSTLADAGLDLSAIDVLMVFPAWGQGEGAVYRIDNVKIHQPGSGGSMN ALSLFADTVADAWSIWDCCGGSTPTVEADDAAHGAVAEYVIGAQPTVVGFFADDGVYYDASAAVETGVVRFEMKLVSAPN DPGSVWKFKIESGDASTAVELNLTDSVEGSAPVVGQWQTYTFPLKTLTDMGLDASAIDVVMVFPAWGTGEGAVFRLDNAL IGTP >Mature_884_residues MMMKNSGTSKYLSLGLLAAALQGCGGDTNTSTDLGSVNLEGPATGWELVWSDEFDGSSIDAAKWAHDVDCAGGGNQESQC YTADEANSFVADGMLNIVALKAPEGAEKPYTSARLTTKGKADFTYGRFEMRAKLPSGQGSWPAFWMLPTDNVYGIWPRSG EIDIVEAVNLKAATVEGTPEAYVHGTLHYGREWPKNEQSGKAYLLPNGVNPADDFHTYAIEWQQGEIRWYVDDYLYATQR RSELRYNSKGQAVGLAHKGWFTEYYDQSSGDLQLSWTDAPFDEKFHLIVNFAVGGNWPASVNETGIDDTAFNENNRYQID FVRVYECAANPDTGKGCETVRPGYDNPDDALVEGKAPVPVPPSDGTPKDLLIFDSTPNPNWAAWDCCGGSTPSLVEDADK GAVYRFVVGDSPTVNGFISRAAFITDPAGVPSPFDAAPIEASGVLSFAMKVVSAPSNADSTWMMKVESNEGATAVELPLT ASSEGVAPAVGQWQTFSFPLSELAAKGLDLSAIDVVMVFPAWGTGSGAEYLLDEVKIARPDTSLPSLTIFTDNENPDWPM WDCCGGSTPQVVSDDAEHGIVSEFSIGASPTVMGYINRTELGGGGNPFDASSLYDNGVVQFDLKVVTAPNTVDAPWLFKV ESNNAASAVELPLTSSVEGMAPSAQWQTFSFRLSTLADAGLDLSAIDVLMVFPAWGQGEGAVYRIDNVKIHQPGSGGSMN ALSLFADTVADAWSIWDCCGGSTPTVEADDAAHGAVAEYVIGAQPTVVGFFADDGVYYDASAAVETGVVRFEMKLVSAPN DPGSVWKFKIESGDASTAVELNLTDSVEGSAPVVGQWQTYTFPLKTLTDMGLDASAIDVVMVFPAWGTGEGAVFRLDNAL IGTP
Specific function: Shows activity on lichenan, beta-glucan and laminarin but not on CMC cellulose or xylan [H]
COG id: COG2273
COG function: function code G; Beta-glucanase/Beta-glucan synthetase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the glycosyl hydrolase 16 family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR008985 - InterPro: IPR013320 - InterPro: IPR000757 - InterPro: IPR008263 [H]
Pfam domain/function: PF00722 Glyco_hydro_16 [H]
EC number: =3.2.1.73 [H]
Molecular weight: Translated: 94270; Mature: 94270
Theoretical pI: Translated: 3.97; Mature: 3.97
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 3.3 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 3.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MMMKNSGTSKYLSLGLLAAALQGCGGDTNTSTDLGSVNLEGPATGWELVWSDEFDGSSID CCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCEEEECCCCCCCCCC AAKWAHDVDCAGGGNQESQCYTADEANSFVADGMLNIVALKAPEGAEKPYTSARLTTKGK HHHCCCCCCCCCCCCCCCEEEECCCCCCCHHCCCEEEEEEECCCCCCCCCCCEEEEECCC ADFTYGRFEMRAKLPSGQGSWPAFWMLPTDNVYGIWPRSGEIDIVEAVNLKAATVEGTPE CCEEEEEEEEEEECCCCCCCCCEEEEEECCCEEEECCCCCCEEEEEECCEEEEEECCCCC AYVHGTLHYGREWPKNEQSGKAYLLPNGVNPADDFHTYAIEWQQGEIRWYVDDYLYATQR EEEEEEECCCCCCCCCCCCCEEEEECCCCCCCCCCEEEEEEEECCCEEEEEEHHHHHHHH RSELRYNSKGQAVGLAHKGWFTEYYDQSSGDLQLSWTDAPFDEKFHLIVNFAVGGNWPAS HHHCCCCCCCCEEEEEECCCCHHHHCCCCCCEEEEECCCCCCCCEEEEEEEEECCCCCCC VNETGIDDTAFNENNRYQIDFVRVYECAANPDTGKGCETVRPGYDNPDDALVEGKAPVPV CCCCCCCCCCCCCCCCEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCC PPSDGTPKDLLIFDSTPNPNWAAWDCCGGSTPSLVEDADKGAVYRFVVGDSPTVNGFISR CCCCCCCCEEEEEECCCCCCEEEEECCCCCCCHHHHCCCCCCEEEEEECCCCCCCHHHHE AAFITDPAGVPSPFDAAPIEASGVLSFAMKVVSAPSNADSTWMMKVESNEGATAVELPLT EEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCEEEEEEEE ASSEGVAPAVGQWQTFSFPLSELAAKGLDLSAIDVVMVFPAWGTGSGAEYLLDEVKIARP CCCCCCCCCCCCCEEECCCHHHHHHCCCCEEEEEEEEEEECCCCCCCHHHHHHHEEEECC DTSLPSLTIFTDNENPDWPMWDCCGGSTPQVVSDDAEHGIVSEFSIGASPTVMGYINRTE CCCCCEEEEEECCCCCCCCEEECCCCCCCCCCCCCCCCCCEEEECCCCCCEEEEEEEEEE LGGGGNPFDASSLYDNGVVQFDLKVVTAPNTVDAPWLFKVESNNAASAVELPLTSSVEGM CCCCCCCCCCCHHCCCCEEEEEEEEEECCCCCCCCEEEEEECCCCCEEEEECCCCCCCCC APSAQWQTFSFRLSTLADAGLDLSAIDVLMVFPAWGQGEGAVYRIDNVKIHQPGSGGSMN CCCCCEEEEEEEEEHHHCCCCCHHEEEEEEEECCCCCCCCCEEEECCEEEECCCCCCCCH ALSLFADTVADAWSIWDCCGGSTPTVEADDAAHGAVAEYVIGAQPTVVGFFADDGVYYDA HHHHHHHHHHHHHHHHHHCCCCCCCEECCCCCCCCHHHHEECCCCEEEEEEECCCEEEEC SAAVETGVVRFEMKLVSAPNDPGSVWKFKIESGDASTAVELNLTDSVEGSAPVVGQWQTY CHHHHCCEEEEEEEEEECCCCCCCEEEEEEECCCCCEEEEEEECCCCCCCCCEEECCEEE TFPLKTLTDMGLDASAIDVVMVFPAWGTGEGAVFRLDNALIGTP EEEHHHHHHCCCCCCEEEEEEEEECCCCCCCEEEEECCEECCCC >Mature Secondary Structure MMMKNSGTSKYLSLGLLAAALQGCGGDTNTSTDLGSVNLEGPATGWELVWSDEFDGSSID CCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCEEEECCCCCCCCCC AAKWAHDVDCAGGGNQESQCYTADEANSFVADGMLNIVALKAPEGAEKPYTSARLTTKGK HHHCCCCCCCCCCCCCCCEEEECCCCCCCHHCCCEEEEEEECCCCCCCCCCCEEEEECCC ADFTYGRFEMRAKLPSGQGSWPAFWMLPTDNVYGIWPRSGEIDIVEAVNLKAATVEGTPE CCEEEEEEEEEEECCCCCCCCCEEEEEECCCEEEECCCCCCEEEEEECCEEEEEECCCCC AYVHGTLHYGREWPKNEQSGKAYLLPNGVNPADDFHTYAIEWQQGEIRWYVDDYLYATQR EEEEEEECCCCCCCCCCCCCEEEEECCCCCCCCCCEEEEEEEECCCEEEEEEHHHHHHHH RSELRYNSKGQAVGLAHKGWFTEYYDQSSGDLQLSWTDAPFDEKFHLIVNFAVGGNWPAS HHHCCCCCCCCEEEEEECCCCHHHHCCCCCCEEEEECCCCCCCCEEEEEEEEECCCCCCC VNETGIDDTAFNENNRYQIDFVRVYECAANPDTGKGCETVRPGYDNPDDALVEGKAPVPV CCCCCCCCCCCCCCCCEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCC PPSDGTPKDLLIFDSTPNPNWAAWDCCGGSTPSLVEDADKGAVYRFVVGDSPTVNGFISR CCCCCCCCEEEEEECCCCCCEEEEECCCCCCCHHHHCCCCCCEEEEEECCCCCCCHHHHE AAFITDPAGVPSPFDAAPIEASGVLSFAMKVVSAPSNADSTWMMKVESNEGATAVELPLT EEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCEEEEEEEE ASSEGVAPAVGQWQTFSFPLSELAAKGLDLSAIDVVMVFPAWGTGSGAEYLLDEVKIARP CCCCCCCCCCCCCEEECCCHHHHHHCCCCEEEEEEEEEEECCCCCCCHHHHHHHEEEECC DTSLPSLTIFTDNENPDWPMWDCCGGSTPQVVSDDAEHGIVSEFSIGASPTVMGYINRTE CCCCCEEEEEECCCCCCCCEEECCCCCCCCCCCCCCCCCCEEEECCCCCCEEEEEEEEEE LGGGGNPFDASSLYDNGVVQFDLKVVTAPNTVDAPWLFKVESNNAASAVELPLTSSVEGM CCCCCCCCCCCHHCCCCEEEEEEEEEECCCCCCCCEEEEEECCCCCEEEEECCCCCCCCC APSAQWQTFSFRLSTLADAGLDLSAIDVLMVFPAWGQGEGAVYRIDNVKIHQPGSGGSMN CCCCCEEEEEEEEEHHHCCCCCHHEEEEEEEECCCCCCCCCEEEECCEEEECCCCCCCCH ALSLFADTVADAWSIWDCCGGSTPTVEADDAAHGAVAEYVIGAQPTVVGFFADDGVYYDA HHHHHHHHHHHHHHHHHHCCCCCCCEECCCCCCCCHHHHEECCCCEEEEEEECCCEEEEC SAAVETGVVRFEMKLVSAPNDPGSVWKFKIESGDASTAVELNLTDSVEGSAPVVGQWQTY CHHHHCCEEEEEEEEEECCCCCCCEEEEEEECCCCCEEEEEEECCCCCCCCCEEECCEEE TFPLKTLTDMGLDASAIDVVMVFPAWGTGEGAVFRLDNALIGTP EEEHHHHHHCCCCCCEEEEEEEEECCCCCCCEEEEECCEECCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 7925416 [H]