| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
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The map label for this gene is 119774506
Identifier: 119774506
GI number: 119774506
Start: 1660919
End: 1661326
Strand: Direct
Name: 119774506
Synonym: Sama_1369
Alternate gene names: NA
Gene position: 1660919-1661326 (Clockwise)
Preceding gene: 119774505
Following gene: 119774507
Centisome position: 38.57
GC content: 52.45
Gene sequence:
>408_bases ATGTGGAGCAAAATTGCCAAAGCGGGCCGGGTTATGGCCGCCCTGTGTATACTCGGCGCCCTGAGCGCCTGTGTGACGGT AGAGGAGCCCAAACCCATAATCATTAATGGCGCGGCGGGTTATCTTGAGTCTGTGGTGTTGCCGCCAAACAGCACCATTA CCATTGCGGTTATCGATTTAGACACCCCCGGCATTATCATCGCTCAGAAAACCTTTAATGTGGTGCGCGCGCCAGTGCCC TTCAAGTTTATTTTGCCGGCCGAGACTATCAGCAGCAATGTGAACTACGGGGTGGTGGCACTTATCAAACACAACAACCA GGTGATTTTCCAAACCTACGATCGCTTTCCGGTGATCCACAACAACAAGTTCACCACCGAAGTGGTGATGAAGCCGGTTG GCAGGTAA
Upstream 100 bases:
>100_bases GCCGCGGTTTTGTAAAAGGACATTTTTTCAATCGCCGTGGTGAGCTGGTGGCGTCGGCTACTCAGGAAGGATTGATGCGT ATGAAAAAGGACAGCAACTG
Downstream 100 bases:
>100_bases TCAGCCGTGTCATCGCCCATTTCTGCCAAGCCGCTGGCCACGGATGTCTTGCAGGACAGATTGGCCAGCTTGGTGCGGGA AGACGCGGTTGCGATGACCT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 135; Mature: 135
Protein sequence:
>135_residues MWSKIAKAGRVMAALCILGALSACVTVEEPKPIIINGAAGYLESVVLPPNSTITIAVIDLDTPGIIIAQKTFNVVRAPVP FKFILPAETISSNVNYGVVALIKHNNQVIFQTYDRFPVIHNNKFTTEVVMKPVGR
Sequences:
>Translated_135_residues MWSKIAKAGRVMAALCILGALSACVTVEEPKPIIINGAAGYLESVVLPPNSTITIAVIDLDTPGIIIAQKTFNVVRAPVP FKFILPAETISSNVNYGVVALIKHNNQVIFQTYDRFPVIHNNKFTTEVVMKPVGR >Mature_135_residues MWSKIAKAGRVMAALCILGALSACVTVEEPKPIIINGAAGYLESVVLPPNSTITIAVIDLDTPGIIIAQKTFNVVRAPVP FKFILPAETISSNVNYGVVALIKHNNQVIFQTYDRFPVIHNNKFTTEVVMKPVGR
Specific function: Unknown
COG id: COG3126
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 14631; Mature: 14631
Theoretical pI: Translated: 9.61; Mature: 9.61
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 3.7 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 3.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MWSKIAKAGRVMAALCILGALSACVTVEEPKPIIINGAAGYLESVVLPPNSTITIAVIDL CCCHHHHHHHHHHHHHHHHHHHHEEEECCCCCEEEECCCHHHEEEEECCCCEEEEEEEEE DTPGIIIAQKTFNVVRAPVPFKFILPAETISSNVNYGVVALIKHNNQVIFQTYDRFPVIH CCCCEEEEECCCEEEECCCCEEEEECHHHHCCCCCCEEEEEEECCCEEEEEECCCCCEEE NNKFTTEVVMKPVGR CCCEEEEEEEECCCC >Mature Secondary Structure MWSKIAKAGRVMAALCILGALSACVTVEEPKPIIINGAAGYLESVVLPPNSTITIAVIDL CCCHHHHHHHHHHHHHHHHHHHHEEEECCCCCEEEECCCHHHEEEEECCCCEEEEEEEEE DTPGIIIAQKTFNVVRAPVPFKFILPAETISSNVNYGVVALIKHNNQVIFQTYDRFPVIH CCCCEEEEECCCEEEECCCCEEEEECHHHHCCCCCCEEEEEEECCCEEEEEECCCCCEEE NNKFTTEVVMKPVGR CCCEEEEEEEECCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA