| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
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The map label for this gene is 119774477
Identifier: 119774477
GI number: 119774477
Start: 1633021
End: 1633770
Strand: Direct
Name: 119774477
Synonym: Sama_1340
Alternate gene names: NA
Gene position: 1633021-1633770 (Clockwise)
Preceding gene: 119774476
Following gene: 119774492
Centisome position: 37.92
GC content: 56.27
Gene sequence:
>750_bases ATGGAACACGAGATCAGTACGCCTGCAACGTCTTCTGCCTTCAGGGCCTTGGTTGAGGAGGTGTTGGCAACACATCAGGG GCACAGAGTGGTTCCCTTCGACTTTGAAGGACGCCGCTATTGGCTGAAACAGCCCGAGCGCCTGGAAGGCGCTATGAAAT TGCTCAAACACAGCCCTGAACAGGCACTGCAAACCGAAATCCGCGCGCTGCAAACCCTTAATGAAAAACATGCGCCTGTG CCCAATGTGGTGCTGGCCGGTGAGGGGTATTTTGTGATTGAGGATGCCGGTAAAACGGTCAGTGATTGGTGGCATTTGTC ACATCAGGACGGCAGTGTCCCCTTTGAGGATATTTTGCGTGACAGTGCGGCAGCGCTGGCCGAGCTGCATTCCCTGGAAC TCGCCCATGGTCGCCCTGCGCTAAGAGACATAGGCTGGCAGGGCGGTGCGGTAAAATTTATCGACTTTGAAGCCAATCAG CGCCAAAAAGACATGGCATCCCAGCAGCTGCGCGATTTACTGGTGTATCTGCACAGTCTTTATCGGTATCTGGGGCCTTT GCACGAGCCCATTACCCGGGCGATGCAGGCGTACCGCGAGGCAGGGGGGGAGCCAACCTGGCAGGCCGCAAAACGTAAGC TAGCGCCCTGGCAGTGGCTTCGCCCATTACTGAAGCCCTTTCGCAGTATCGGTGGAAGGGACCTCAAGCCCATGTACTGG GTGTTGTGGCATTTTCACAACCACGGCTGA
Upstream 100 bases:
>100_bases GTCTGAATGCTGAACCGACGGCTATAACATACTCAGGTTTCATTGAAATTACACAGGGGCGCGGGGATAATGCCGCCGCA AACTGTGAGATGGGATACGA
Downstream 100 bases:
>100_bases TTAATCATGGGCCGCGGGTTTGAAACTGCCCACCTCGGGTTTAAAGGTCTTGGCGATACGGTTCCAGCTGTTGATGGCGT TAATGGCAATGGTTAAATCC
Product: Mn2+-dependent serine/threonine protein kinase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 249; Mature: 249
Protein sequence:
>249_residues MEHEISTPATSSAFRALVEEVLATHQGHRVVPFDFEGRRYWLKQPERLEGAMKLLKHSPEQALQTEIRALQTLNEKHAPV PNVVLAGEGYFVIEDAGKTVSDWWHLSHQDGSVPFEDILRDSAAALAELHSLELAHGRPALRDIGWQGGAVKFIDFEANQ RQKDMASQQLRDLLVYLHSLYRYLGPLHEPITRAMQAYREAGGEPTWQAAKRKLAPWQWLRPLLKPFRSIGGRDLKPMYW VLWHFHNHG
Sequences:
>Translated_249_residues MEHEISTPATSSAFRALVEEVLATHQGHRVVPFDFEGRRYWLKQPERLEGAMKLLKHSPEQALQTEIRALQTLNEKHAPV PNVVLAGEGYFVIEDAGKTVSDWWHLSHQDGSVPFEDILRDSAAALAELHSLELAHGRPALRDIGWQGGAVKFIDFEANQ RQKDMASQQLRDLLVYLHSLYRYLGPLHEPITRAMQAYREAGGEPTWQAAKRKLAPWQWLRPLLKPFRSIGGRDLKPMYW VLWHFHNHG >Mature_249_residues MEHEISTPATSSAFRALVEEVLATHQGHRVVPFDFEGRRYWLKQPERLEGAMKLLKHSPEQALQTEIRALQTLNEKHAPV PNVVLAGEGYFVIEDAGKTVSDWWHLSHQDGSVPFEDILRDSAAALAELHSLELAHGRPALRDIGWQGGAVKFIDFEANQ RQKDMASQQLRDLLVYLHSLYRYLGPLHEPITRAMQAYREAGGEPTWQAAKRKLAPWQWLRPLLKPFRSIGGRDLKPMYW VLWHFHNHG
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR011009 [H]
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 28574; Mature: 28574
Theoretical pI: Translated: 7.57; Mature: 7.57
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 2.0 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 2.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MEHEISTPATSSAFRALVEEVLATHQGHRVVPFDFEGRRYWLKQPERLEGAMKLLKHSPE CCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCEECCCCCHHHHHHHHHHHCCHH QALQTEIRALQTLNEKHAPVPNVVLAGEGYFVIEDAGKTVSDWWHLSHQDGSVPFEDILR HHHHHHHHHHHHHHHCCCCCCCEEEECCCEEEEECCCCCHHHHHHCCCCCCCCCHHHHHH DSAAALAELHSLELAHGRPALRDIGWQGGAVKFIDFEANQRQKDMASQQLRDLLVYLHSL HHHHHHHHHHHHHHHCCCCHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHH YRYLGPLHEPITRAMQAYREAGGEPTWQAAKRKLAPWQWLRPLLKPFRSIGGRDLKPMYW HHHHCHHHHHHHHHHHHHHHCCCCCCHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCHHHH VLWHFHNHG HHHHHHCCC >Mature Secondary Structure MEHEISTPATSSAFRALVEEVLATHQGHRVVPFDFEGRRYWLKQPERLEGAMKLLKHSPE CCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCEECCCCCHHHHHHHHHHHCCHH QALQTEIRALQTLNEKHAPVPNVVLAGEGYFVIEDAGKTVSDWWHLSHQDGSVPFEDILR HHHHHHHHHHHHHHHCCCCCCCEEEECCCEEEEECCCCCHHHHHHCCCCCCCCCHHHHHH DSAAALAELHSLELAHGRPALRDIGWQGGAVKFIDFEANQRQKDMASQQLRDLLVYLHSL HHHHHHHHHHHHHHHCCCCHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHH YRYLGPLHEPITRAMQAYREAGGEPTWQAAKRKLAPWQWLRPLLKPFRSIGGRDLKPMYW HHHHCHHHHHHHHHHHHHHHCCCCCCHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCHHHH VLWHFHNHG HHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 7542800 [H]