| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
Click here to switch to the map view.
The map label for this gene is yecH [H]
Identifier: 119774420
GI number: 119774420
Start: 1573081
End: 1573323
Strand: Direct
Name: yecH [H]
Synonym: Sama_1283
Alternate gene names: 119774420
Gene position: 1573081-1573323 (Clockwise)
Preceding gene: 119774415
Following gene: 119774427
Centisome position: 36.53
GC content: 47.74
Gene sequence:
>243_bases ATGACCCAATCTGTTCACGGCCATCAAGTGATGGCTTTGATGTTAGCCCACGGTAAACCTCTGACTCAAGATGCACTTGT GTCCTTGATTGCGCAAACTTTTGGTGATTCGGCCAGGTTTCACACTTGCAGTGCGCAAGGGTTAACAGCCGGCGAGCTAA TAAGGTTTTTGAAGCAAAAGGGGAAATTTATTGAAACAGAGCAGGGCCTGGTGACACTTCAAGCCCTGATTTGTGAGCAC TAG
Upstream 100 bases:
>100_bases GAACTTTGCGCTGGCGCAGAGAAACGCTGAGCAGGCTGGGTTATAAGATGCCAATGATTTGCCTTAAATCCCACATGTAC CTGAAACAGCGGAGCTCCCA
Downstream 100 bases:
>100_bases TTGTCTTCTTCGCCACGACGAAGAATGTGATCCTGTTCACCTGCACTTTTTTCGTGGAATTCTTTGATGAGGATACGAAG CAGCTTGGATTTGGCGATGC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 80; Mature: 79
Protein sequence:
>80_residues MTQSVHGHQVMALMLAHGKPLTQDALVSLIAQTFGDSARFHTCSAQGLTAGELIRFLKQKGKFIETEQGLVTLQALICEH
Sequences:
>Translated_80_residues MTQSVHGHQVMALMLAHGKPLTQDALVSLIAQTFGDSARFHTCSAQGLTAGELIRFLKQKGKFIETEQGLVTLQALICEH >Mature_79_residues TQSVHGHQVMALMLAHGKPLTQDALVSLIAQTFGDSARFHTCSAQGLTAGELIRFLKQKGKFIETEQGLVTLQALICEH
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Escherichia coli, GI1788217, Length=78, Percent_Identity=50, Blast_Score=87, Evalue=2e-19,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR019620 [H]
Pfam domain/function: PF10678 DUF2492 [H]
EC number: NA
Molecular weight: Translated: 8704; Mature: 8573
Theoretical pI: Translated: 7.64; Mature: 7.64
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.5 %Cys (Translated Protein) 3.8 %Met (Translated Protein) 6.2 %Cys+Met (Translated Protein) 2.5 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 5.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTQSVHGHQVMALMLAHGKPLTQDALVSLIAQTFGDSARFHTCSAQGLTAGELIRFLKQK CCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCEEECCCCCCCHHHHHHHHHHC GKFIETEQGLVTLQALICEH CCEECCCCHHHHHHHHHHCC >Mature Secondary Structure TQSVHGHQVMALMLAHGKPLTQDALVSLIAQTFGDSARFHTCSAQGLTAGELIRFLKQK CCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCEEECCCCCCCHHHHHHHHHHC GKFIETEQGLVTLQALICEH CCEECCCCHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9097040; 9278503 [H]