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The map label for this gene is rssA [H]

Identifier: 119774411

GI number: 119774411

Start: 1562539

End: 1563474

Strand: Direct

Name: rssA [H]

Synonym: Sama_1274

Alternate gene names: 119774411

Gene position: 1562539-1563474 (Clockwise)

Preceding gene: 119774406

Following gene: 119774412

Centisome position: 36.29

GC content: 58.87

Gene sequence:

>936_bases
ATGAGCCAACCCCGTATTGGAATTGCCCTGGGCAGTGGTGCAGCTAAAGGCTGGGCCCACATTGGGGTGTTCAATGCCCT
CGATGAGTTGGGAATAAAGCCCGAACGGGTCGCCGGGTGTTCCATTGGGGCTTTGGTGGGGGCTGCTTATGTCAACGGTC
GCCTCGGCGACCTCGAAGCCTGGGTCAGAAGTTTTTCGAGCTGGGATGTTCTTGGGCTGATGGACTTAAGCTGGCGCCGT
GGCGGCCTTATCCGGGGGGAAAAGGTGTTTGATGTAATGCAAAGTCGCATCGGCAGTATGGACATTGAGTCCATGTCCAT
GCCCTTTATTGCGGTGGCGACTGACTTGTACAGTGGTCAGGAGATCTGGTTTCGCCAGGGCGATTTACGCCATGCGGTCA
GGGCATCCTGTTCCATGCCAGGCATACTGCCGCCGGTGCGACAAGGGCACAGATGGCTGGTAGACGGCGCCGTAGTTAAT
CCTGTACCTGTGTCGGCCTGTCGTGCCCTTGATGTGGATTTGGTGATTGCGGTGGATTTGGATGGACAGCGTCGCAGCCG
TATTCAGGCTGTGCCGGTTGACCTTCGCAGTGAGGCCATCAGTCCTCAGGAAGAAACCCGGGCCCTTGCCGAGCAAGAGG
GCGGCTTTATGGACCTCTTTGCCCGCGGCCGCGACTATATCGCCAGCCTGTCGGATAAATTTGCCCTCGGTACCCGGGAT
GACCCCGGCATGCTGGCGGTGATGAACCAGTCCATGGAGATAGTGCAGCAACGACATAAGAGGGCACGTCTGATGGGCGA
CCCGCCCGATGTGTGCTTGGTCCCCAAGGTCGCCGACATAGGCACCATGGAGTTTCACCGCGCAGCCGAGGCCATAGATG
CGGGCTACAGCGCTGTGATGGCCCAGGCCCATTTGCTGGAAGCTGCCCTCGGTTAA

Upstream 100 bases:

>100_bases
CAATAGATTGTTTCCTTTCTTCCCAAGCGCTGGCTCCTGCCGGCGCTTGTCGTTTATAGTCAGAGTCATTCTTGCCTTCA
TCTTTGCAAAGGAGTCGTAG

Downstream 100 bases:

>100_bases
TCCCGTTATTTCAGCGTAAAAGCCGCCAGTCTCTCAATGAGTCTGGCGGCTTTTTTGTGCCTGCCTAATGGTGATTTTTC
TTCCGGTCAAGGGGCTAAAT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 311; Mature: 310

Protein sequence:

>311_residues
MSQPRIGIALGSGAAKGWAHIGVFNALDELGIKPERVAGCSIGALVGAAYVNGRLGDLEAWVRSFSSWDVLGLMDLSWRR
GGLIRGEKVFDVMQSRIGSMDIESMSMPFIAVATDLYSGQEIWFRQGDLRHAVRASCSMPGILPPVRQGHRWLVDGAVVN
PVPVSACRALDVDLVIAVDLDGQRRSRIQAVPVDLRSEAISPQEETRALAEQEGGFMDLFARGRDYIASLSDKFALGTRD
DPGMLAVMNQSMEIVQQRHKRARLMGDPPDVCLVPKVADIGTMEFHRAAEAIDAGYSAVMAQAHLLEAALG

Sequences:

>Translated_311_residues
MSQPRIGIALGSGAAKGWAHIGVFNALDELGIKPERVAGCSIGALVGAAYVNGRLGDLEAWVRSFSSWDVLGLMDLSWRR
GGLIRGEKVFDVMQSRIGSMDIESMSMPFIAVATDLYSGQEIWFRQGDLRHAVRASCSMPGILPPVRQGHRWLVDGAVVN
PVPVSACRALDVDLVIAVDLDGQRRSRIQAVPVDLRSEAISPQEETRALAEQEGGFMDLFARGRDYIASLSDKFALGTRD
DPGMLAVMNQSMEIVQQRHKRARLMGDPPDVCLVPKVADIGTMEFHRAAEAIDAGYSAVMAQAHLLEAALG
>Mature_310_residues
SQPRIGIALGSGAAKGWAHIGVFNALDELGIKPERVAGCSIGALVGAAYVNGRLGDLEAWVRSFSSWDVLGLMDLSWRRG
GLIRGEKVFDVMQSRIGSMDIESMSMPFIAVATDLYSGQEIWFRQGDLRHAVRASCSMPGILPPVRQGHRWLVDGAVVNP
VPVSACRALDVDLVIAVDLDGQRRSRIQAVPVDLRSEAISPQEETRALAEQEGGFMDLFARGRDYIASLSDKFALGTRDD
PGMLAVMNQSMEIVQQRHKRARLMGDPPDVCLVPKVADIGTMEFHRAAEAIDAGYSAVMAQAHLLEAALG

Specific function: Unknown

COG id: COG1752

COG function: function code R; Predicted esterase of the alpha-beta hydrolase superfamily

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 patatin domain [H]

Homologues:

Organism=Homo sapiens, GI260656041, Length=186, Percent_Identity=31.1827956989247, Blast_Score=92, Evalue=4e-19,
Organism=Homo sapiens, GI116256487, Length=186, Percent_Identity=31.1827956989247, Blast_Score=92, Evalue=4e-19,
Organism=Homo sapiens, GI260656043, Length=186, Percent_Identity=31.1827956989247, Blast_Score=92, Evalue=4e-19,
Organism=Homo sapiens, GI260656039, Length=186, Percent_Identity=31.1827956989247, Blast_Score=92, Evalue=4e-19,
Organism=Homo sapiens, GI260656037, Length=186, Percent_Identity=31.1827956989247, Blast_Score=92, Evalue=4e-19,
Organism=Homo sapiens, GI148727290, Length=183, Percent_Identity=32.2404371584699, Blast_Score=87, Evalue=2e-17,
Organism=Homo sapiens, GI148727335, Length=183, Percent_Identity=32.2404371584699, Blast_Score=87, Evalue=3e-17,
Organism=Escherichia coli, GI226510936, Length=299, Percent_Identity=48.494983277592, Blast_Score=273, Evalue=1e-74,
Organism=Caenorhabditis elegans, GI193204778, Length=165, Percent_Identity=32.7272727272727, Blast_Score=76, Evalue=2e-14,
Organism=Caenorhabditis elegans, GI71997299, Length=174, Percent_Identity=32.183908045977, Blast_Score=67, Evalue=8e-12,
Organism=Caenorhabditis elegans, GI71997289, Length=174, Percent_Identity=32.183908045977, Blast_Score=67, Evalue=8e-12,
Organism=Saccharomyces cerevisiae, GI6323581, Length=188, Percent_Identity=29.2553191489362, Blast_Score=84, Evalue=2e-17,
Organism=Drosophila melanogaster, GI28571388, Length=186, Percent_Identity=32.258064516129, Blast_Score=86, Evalue=4e-17,
Organism=Drosophila melanogaster, GI281376913, Length=186, Percent_Identity=32.7956989247312, Blast_Score=85, Evalue=5e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016035
- InterPro:   IPR001423
- InterPro:   IPR002641 [H]

Pfam domain/function: PF01734 Patatin [H]

EC number: NA

Molecular weight: Translated: 33681; Mature: 33550

Theoretical pI: Translated: 5.67; Mature: 5.67

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
4.5 %Met     (Translated Protein)
5.8 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
4.2 %Met     (Mature Protein)
5.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSQPRIGIALGSGAAKGWAHIGVFNALDELGIKPERVAGCSIGALVGAAYVNGRLGDLEA
CCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCHHHCCCHHHHHHHHHHHCCCCCHHHH
WVRSFSSWDVLGLMDLSWRRGGLIRGEKVFDVMQSRIGSMDIESMSMPFIAVATDLYSGQ
HHHHCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHCCCCCHHHCCCCEEEEHHHCCCC
EIWFRQGDLRHAVRASCSMPGILPPVRQGHRWLVDGAVVNPVPVSACRALDVDLVIAVDL
EEEEECCCHHHHHHHHCCCCCCCCCHHCCCEEEECCCEECCCCHHHHHHCCEEEEEEEEC
DGQRRSRIQAVPVDLRSEAISPQEETRALAEQEGGFMDLFARGRDYIASLSDKFALGTRD
CCCHHCCEEECCCCHHHHCCCCHHHHHHHHHHCCCCHHHHHCCHHHHHHHCCCEECCCCC
DPGMLAVMNQSMEIVQQRHKRARLMGDPPDVCLVPKVADIGTMEFHRAAEAIDAGYSAVM
CCCEEEEHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHH
AQAHLLEAALG
HHHHHHHHHCC
>Mature Secondary Structure 
SQPRIGIALGSGAAKGWAHIGVFNALDELGIKPERVAGCSIGALVGAAYVNGRLGDLEA
CCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCHHHCCCHHHHHHHHHHHCCCCCHHHH
WVRSFSSWDVLGLMDLSWRRGGLIRGEKVFDVMQSRIGSMDIESMSMPFIAVATDLYSGQ
HHHHCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHCCCCCHHHCCCCEEEEHHHCCCC
EIWFRQGDLRHAVRASCSMPGILPPVRQGHRWLVDGAVVNPVPVSACRALDVDLVIAVDL
EEEEECCCHHHHHHHHCCCCCCCCCHHCCCEEEECCCEECCCCHHHHHHCCEEEEEEEEC
DGQRRSRIQAVPVDLRSEAISPQEETRALAEQEGGFMDLFARGRDYIASLSDKFALGTRD
CCCHHCCEEECCCCHHHHCCCCHHHHHHHHHHCCCCHHHHHCCHHHHHHHCCCEECCCCC
DPGMLAVMNQSMEIVQQRHKRARLMGDPPDVCLVPKVADIGTMEFHRAAEAIDAGYSAVM
CCCEEEEHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHH
AQAHLLEAALG
HHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8282700; 9097039; 8905232; 9278503 [H]