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The map label for this gene is nrdD [H]

Identifier: 119774412

GI number: 119774412

Start: 1563748

End: 1565865

Strand: Direct

Name: nrdD [H]

Synonym: Sama_1275

Alternate gene names: 119774412

Gene position: 1563748-1565865 (Clockwise)

Preceding gene: 119774411

Following gene: 119774413

Centisome position: 36.31

GC content: 54.72

Gene sequence:

>2118_bases
ATGCCAGTGGTTATCAAGCGGGATGGTTGCCGCGCTGCCTTTGATGAAACCCGGTTGCGGGATGCTGTTATTGCAGCCCA
GGGCGCAGCCGGTGTCGAGGATAAAGACTATGCGGCCACGGTGGCGTCGGTGGTGGCAGCCGAGGTGGCCCAGCGCGACG
AAGTTGCTATCCACGAGCTGCAGGATGCAGTGGAAAACTGCCTGATGTCCGGTCCCTATAAAGAGGTTGCCCGTCACTAT
ATCGAATATCGCCACGACAGAGACGTATGCCGCGAAGCAACCAGTCGACTGAATCTGGAAATCCGTTCGCTGGTGGAGCA
AACCAATGCGGCGTTGCTGCATGAAAACGCCAATAAAGACTCCAAGGTGATCCCGACCCAACGTGACTTGCTCGCCGGCA
TTGTCGCCCGTCACTATGCCAAGCGCCACATTTTGCCCAAGGCGGTGGTGGCAGCCCATGAGGCGGGGGAGATACATTAT
CACGATCTGGATTACTCACCCTTTTTCCCTATGTTCAACTGCATGCTGATTGACCTTGCTGGCATGTTGACCAAGGGCTT
TAAAATGGGCAACGCCGAAATCGAAACGCCCAAGTCTATTTCCACCGCGACTGCTGTGACAGCGCAGATCATCGCCCAGG
TGGCCAGCCACATCTATGGCGGTACCACCATCAATCGCATCGATGAAGTGTTGTCACCCTATGTGGCCAAGAGCTATGAC
AAACACTACCAAACGGCGCTGCACTGGGGCATTACCGATGCGGTGGCCTATGCCCGTGCCCTGACAGAAAAAGAGTGTCA
CGATGCTTTCCAGTCGCTGGAATACGAAGTGAACACCCTGCATACGGCTAACGGACAGACCCCATTTGTCACCTTTGGCT
TTGGTCTTGGCACCAGTTGGGAGTCGCGGCTGATTCAGCAGTCCATTCTTAAGGTGCGGATGGCGGGACTGGGTAAAAAC
CGCAAAACAGCAGTATTCCCCAAACTGGTGTTTGCCATCCGCGATGGCATCAATCACAAGCAGGGTGACTGCAACTACGA
TATCAAGCGTCTGGCACTCAAGTGCGCCACCGAGCGCATGTATCCGGACATTCTCAACTACGAGCAAGTGGTGCGTGTCA
CCGGGTCATTCAAAACCCCCATGGGCTGTCGCAGCTTCCTTGGGGTGTATGAAAAAGACGGTGAGTTGGAGCACGAAGGC
CGTAATAACCTGGGGGTGGTCAGTCTTAACCTGCCACGTATCGCCATTGAAGCCGGTGGCGATGAAAGTCGCTTCTACAG
CTTGCTGGAGGAGCGTTTGCAGGTGGCACGACAGGCCCTCGATAGCCGCATTGAACGCCTGAAAGGGGTGAAGGCCCGGG
TTGCGCCGATTCTGTACATGGAAGGAGCATGCGGCGTTCGACTGCGCCCGGACGATGATATTGAGCCCATATTCAAAAAT
GGTCGTGCGTCCATCTCCCTTGGCTACATAGGCCTGCATGAAACCGTAAACGCCCTTTATGGTACGCAGGAGCATGTGTA
CGACTCCGAGGAGCTTCGGCAAAAAGCCGTTGCCATCGTGGCGCGCCTCAAGCAGGCCACCGAGCAATGGAAGCAGGAAA
CCGGGTACGGTTTCAGCCTGTACAGTACACCCAGCGAAAGCCTGTGCAGCCGCTTTGCCAAGTTGGATATCAAGGCCTTT
GGCCTGATACAAGGGGTGACTGACAAGGGCTACTACACCAACAGTTTCCACCTGGATGTGGAAAAGAAAGTCTCGCCATT
TGATAAAATCGATTTTGAGATGCCATACCCAGAGCTCGCCAGTGGTGGCTTTATTTGCTACGGCGAATATCCCAATATGC
AGCACAATATTGATGCACTGGAGGACGTGTGGGACTACAGCTATACCCGGGTCCCTTACTATGGCACCAATACCCCCATC
GATGAGTGCTACGACTGTGGCTTTACCGGCGAATTTGACTGCACCAGCAAGGGCTTTGTATGCCCGGTTTGCGGAAACCA
TGAGCCCAGTCGTGTGTCAGTAACACGCAGGGTGTGTGGCTATCTTGGCAGCCCTGATGCGCGTCCCTTTAATCATGGCA
AGCAGGAAGAAGTCAAACGCCGGGTCAAGCATCTCTGA

Upstream 100 bases:

>100_bases
GGTATCGGTCTGGTATTTATCGCCTAATACACTACATTTTGTATCTGGATAAAAAATAAGCTCAACATATAGTGATTGGG
TAAACGGAGAGGACCTGTAT

Downstream 100 bases:

>100_bases
TGGCAAGGCTTTATCATGGCAGCGCAAGGAGCATCCTCTTGTGAACTACCATCAGTACTATCCGTTGGATGTGCTTAACG
GGCCGGGCACCAGGGCTACG

Product: anaerobic ribonucleoside triphosphate reductase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 705; Mature: 704

Protein sequence:

>705_residues
MPVVIKRDGCRAAFDETRLRDAVIAAQGAAGVEDKDYAATVASVVAAEVAQRDEVAIHELQDAVENCLMSGPYKEVARHY
IEYRHDRDVCREATSRLNLEIRSLVEQTNAALLHENANKDSKVIPTQRDLLAGIVARHYAKRHILPKAVVAAHEAGEIHY
HDLDYSPFFPMFNCMLIDLAGMLTKGFKMGNAEIETPKSISTATAVTAQIIAQVASHIYGGTTINRIDEVLSPYVAKSYD
KHYQTALHWGITDAVAYARALTEKECHDAFQSLEYEVNTLHTANGQTPFVTFGFGLGTSWESRLIQQSILKVRMAGLGKN
RKTAVFPKLVFAIRDGINHKQGDCNYDIKRLALKCATERMYPDILNYEQVVRVTGSFKTPMGCRSFLGVYEKDGELEHEG
RNNLGVVSLNLPRIAIEAGGDESRFYSLLEERLQVARQALDSRIERLKGVKARVAPILYMEGACGVRLRPDDDIEPIFKN
GRASISLGYIGLHETVNALYGTQEHVYDSEELRQKAVAIVARLKQATEQWKQETGYGFSLYSTPSESLCSRFAKLDIKAF
GLIQGVTDKGYYTNSFHLDVEKKVSPFDKIDFEMPYPELASGGFICYGEYPNMQHNIDALEDVWDYSYTRVPYYGTNTPI
DECYDCGFTGEFDCTSKGFVCPVCGNHEPSRVSVTRRVCGYLGSPDARPFNHGKQEEVKRRVKHL

Sequences:

>Translated_705_residues
MPVVIKRDGCRAAFDETRLRDAVIAAQGAAGVEDKDYAATVASVVAAEVAQRDEVAIHELQDAVENCLMSGPYKEVARHY
IEYRHDRDVCREATSRLNLEIRSLVEQTNAALLHENANKDSKVIPTQRDLLAGIVARHYAKRHILPKAVVAAHEAGEIHY
HDLDYSPFFPMFNCMLIDLAGMLTKGFKMGNAEIETPKSISTATAVTAQIIAQVASHIYGGTTINRIDEVLSPYVAKSYD
KHYQTALHWGITDAVAYARALTEKECHDAFQSLEYEVNTLHTANGQTPFVTFGFGLGTSWESRLIQQSILKVRMAGLGKN
RKTAVFPKLVFAIRDGINHKQGDCNYDIKRLALKCATERMYPDILNYEQVVRVTGSFKTPMGCRSFLGVYEKDGELEHEG
RNNLGVVSLNLPRIAIEAGGDESRFYSLLEERLQVARQALDSRIERLKGVKARVAPILYMEGACGVRLRPDDDIEPIFKN
GRASISLGYIGLHETVNALYGTQEHVYDSEELRQKAVAIVARLKQATEQWKQETGYGFSLYSTPSESLCSRFAKLDIKAF
GLIQGVTDKGYYTNSFHLDVEKKVSPFDKIDFEMPYPELASGGFICYGEYPNMQHNIDALEDVWDYSYTRVPYYGTNTPI
DECYDCGFTGEFDCTSKGFVCPVCGNHEPSRVSVTRRVCGYLGSPDARPFNHGKQEEVKRRVKHL
>Mature_704_residues
PVVIKRDGCRAAFDETRLRDAVIAAQGAAGVEDKDYAATVASVVAAEVAQRDEVAIHELQDAVENCLMSGPYKEVARHYI
EYRHDRDVCREATSRLNLEIRSLVEQTNAALLHENANKDSKVIPTQRDLLAGIVARHYAKRHILPKAVVAAHEAGEIHYH
DLDYSPFFPMFNCMLIDLAGMLTKGFKMGNAEIETPKSISTATAVTAQIIAQVASHIYGGTTINRIDEVLSPYVAKSYDK
HYQTALHWGITDAVAYARALTEKECHDAFQSLEYEVNTLHTANGQTPFVTFGFGLGTSWESRLIQQSILKVRMAGLGKNR
KTAVFPKLVFAIRDGINHKQGDCNYDIKRLALKCATERMYPDILNYEQVVRVTGSFKTPMGCRSFLGVYEKDGELEHEGR
NNLGVVSLNLPRIAIEAGGDESRFYSLLEERLQVARQALDSRIERLKGVKARVAPILYMEGACGVRLRPDDDIEPIFKNG
RASISLGYIGLHETVNALYGTQEHVYDSEELRQKAVAIVARLKQATEQWKQETGYGFSLYSTPSESLCSRFAKLDIKAFG
LIQGVTDKGYYTNSFHLDVEKKVSPFDKIDFEMPYPELASGGFICYGEYPNMQHNIDALEDVWDYSYTRVPYYGTNTPID
ECYDCGFTGEFDCTSKGFVCPVCGNHEPSRVSVTRRVCGYLGSPDARPFNHGKQEEVKRRVKHL

Specific function: Unknown

COG id: COG1328

COG function: function code F; Oxygen-sensitive ribonucleoside-triphosphate reductase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 glycine radical domain [H]

Homologues:

Organism=Escherichia coli, GI1790686, Length=705, Percent_Identity=77.5886524822695, Blast_Score=1165, Evalue=0.0,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005144
- InterPro:   IPR001150
- InterPro:   IPR019777
- InterPro:   IPR012833 [H]

Pfam domain/function: PF03477 ATP-cone; PF01228 Gly_radical [H]

EC number: =1.17.4.2 [H]

Molecular weight: Translated: 78935; Mature: 78804

Theoretical pI: Translated: 6.61; Mature: 6.61

Prosite motif: PS51161 ATP_CONE ; PS00850 GLY_RADICAL_1 ; PS51149 GLY_RADICAL_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.4 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
2.4 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPVVIKRDGCRAAFDETRLRDAVIAAQGAAGVEDKDYAATVASVVAAEVAQRDEVAIHEL
CCEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
QDAVENCLMSGPYKEVARHYIEYRHDRDVCREATSRLNLEIRSLVEQTNAALLHENANKD
HHHHHHHHCCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCC
SKVIPTQRDLLAGIVARHYAKRHILPKAVVAAHEAGEIHYHDLDYSPFFPMFNCMLIDLA
CCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHH
GMLTKGFKMGNAEIETPKSISTATAVTAQIIAQVASHIYGGTTINRIDEVLSPYVAKSYD
HHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
KHYQTALHWGITDAVAYARALTEKECHDAFQSLEYEVNTLHTANGQTPFVTFGFGLGTSW
HHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCHHHHEEEECCCCCCEEEEECCCCCCH
ESRLIQQSILKVRMAGLGKNRKTAVFPKLVFAIRDGINHKQGDCNYDIKRLALKCATERM
HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHH
YPDILNYEQVVRVTGSFKTPMGCRSFLGVYEKDGELEHEGRNNLGVVSLNLPRIAIEAGG
CHHHHCHHHHHHHHCCCCCCCHHHHHHCCCCCCCCCCCCCCCCEEEEEECCCEEEEECCC
DESRFYSLLEERLQVARQALDSRIERLKGVKARVAPILYMEGACGVRLRPDDDIEPIFKN
CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCEEEEECCCCCEEECCCCCCHHHHHC
GRASISLGYIGLHETVNALYGTQEHVYDSEELRQKAVAIVARLKQATEQWKQETGYGFSL
CCCEEEEEEEEHHHHHHHHHCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEE
YSTPSESLCSRFAKLDIKAFGLIQGVTDKGYYTNSFHLDVEKKVSPFDKIDFEMPYPELA
ECCCHHHHHHHHHHCCHHHHHHHCCCCCCCEEECEEEEEHHHHCCCCCCCCCCCCCHHHC
SGGFICYGEYPNMQHNIDALEDVWDYSYTRVPYYGTNTPIDECYDCGFTGEFDCTSKGFV
CCCEEEECCCCCCCCCHHHHHHHHCCCCEECCCCCCCCCHHHHHCCCCCCCCCCCCCCCE
CPVCGNHEPSRVSVTRRVCGYLGSPDARPFNHGKQEEVKRRVKHL
EECCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCC
>Mature Secondary Structure 
PVVIKRDGCRAAFDETRLRDAVIAAQGAAGVEDKDYAATVASVVAAEVAQRDEVAIHEL
CEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
QDAVENCLMSGPYKEVARHYIEYRHDRDVCREATSRLNLEIRSLVEQTNAALLHENANKD
HHHHHHHHCCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCC
SKVIPTQRDLLAGIVARHYAKRHILPKAVVAAHEAGEIHYHDLDYSPFFPMFNCMLIDLA
CCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHH
GMLTKGFKMGNAEIETPKSISTATAVTAQIIAQVASHIYGGTTINRIDEVLSPYVAKSYD
HHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
KHYQTALHWGITDAVAYARALTEKECHDAFQSLEYEVNTLHTANGQTPFVTFGFGLGTSW
HHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCHHHHEEEECCCCCCEEEEECCCCCCH
ESRLIQQSILKVRMAGLGKNRKTAVFPKLVFAIRDGINHKQGDCNYDIKRLALKCATERM
HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHH
YPDILNYEQVVRVTGSFKTPMGCRSFLGVYEKDGELEHEGRNNLGVVSLNLPRIAIEAGG
CHHHHCHHHHHHHHCCCCCCCHHHHHHCCCCCCCCCCCCCCCCEEEEEECCCEEEEECCC
DESRFYSLLEERLQVARQALDSRIERLKGVKARVAPILYMEGACGVRLRPDDDIEPIFKN
CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCEEEEECCCCCEEECCCCCCHHHHHC
GRASISLGYIGLHETVNALYGTQEHVYDSEELRQKAVAIVARLKQATEQWKQETGYGFSL
CCCEEEEEEEEHHHHHHHHHCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEE
YSTPSESLCSRFAKLDIKAFGLIQGVTDKGYYTNSFHLDVEKKVSPFDKIDFEMPYPELA
ECCCHHHHHHHHHHCCHHHHHHHCCCCCCCEEECEEEEEHHHHCCCCCCCCCCCCCHHHC
SGGFICYGEYPNMQHNIDALEDVWDYSYTRVPYYGTNTPIDECYDCGFTGEFDCTSKGFV
CCCEEEECCCCCCCCCHHHHHHHHCCCCEECCCCCCCCCHHHHHCCCCCCCCCCCCCCCE
CPVCGNHEPSRVSVTRRVCGYLGSPDARPFNHGKQEEVKRRVKHL
EECCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8421692; 7610040; 9278503; 8083158; 7852304 [H]