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The map label for this gene is mdcF [H]

Identifier: 119774164

GI number: 119774164

Start: 1242787

End: 1243734

Strand: Reverse

Name: mdcF [H]

Synonym: Sama_1027

Alternate gene names: 119774164

Gene position: 1243734-1242787 (Counterclockwise)

Preceding gene: 119774166

Following gene: 119774163

Centisome position: 28.88

GC content: 56.65

Gene sequence:

>948_bases
ATGTTCAACCTCCTCATTCCGCTGCTCGCTGTTGTTGCCGTGATGATTGCGGGCGCTGCCAGCTCCAGACTCCTTCCGGG
CTGGTTAGAACGCTTTCTCAACCAATACGTGTACTACCTTGCATTTCCGGCCATCCTGTATGTGAGCTTGGCCAAAACGC
CCATTGAACAAATTCTCAACCCCGGATTTGTGCTGGGTTATCTGCTTGCCATGGTGGTGACCTATGTATTGGTGCAGCTA
TGGTCACTGAAGCATGAACAGGGACAACCCCGTCCGGCGAGTCTGCGTGCCCTCTCGGCCACCTTCGGCAACACAGCCTT
TATCGGTATTCCCGTGCTGGCGATGCTGTTTCCGGATAATCCGCAGGCGCTGATGGCTGCCGCGCTGGCAAGCCTTTTAT
CCGTCTTGATGTTTGCCGTTACCGTGGTGCAATTAAGACTTGCCAGCCAACCACTGACTGGCATTGCTCGATTAAGCCTG
GCGCTGCGGGTTGTGAGCAGGAACCCTGTGGTCATCGGCTGCGCTCTCGGGGTACTGGCGTCGGCGATGCAGTTTTCACT
GCCCCCGATACTGGAACCCCTGGTGACATGGATAGGTAAAAGTTCCAGCCCCTGCGCGCTTTTTGCCATCGGCATAGCGC
TGGCCCGTTCCATGCGAGAGCCTGAACACAGTCGAGTGGGCGTGCCCTTCTGGCACGTGAATCTGGCGAAACTGGCTTTG
CAGCCGCTCCTGGTATGGCTACTCTTCAGTTGGTTTGGGGTGGACACGCAGCTGACCGTGATGGGGGTACTGCTTTCCGC
CATGCCCACTGCCGCCAGCGTTTATCTGCTGGCCTATCAGGATAAAACCCTGGAAAAACAAATCGCCCGGGGCATAGTGG
CAGGCACGCTGCTGACGCTTTTCAGTCTGCCGCTGCTGACGATGGGGTTAAACCTGATAACCCAGTAA

Upstream 100 bases:

>100_bases
GACCAAGGACCAATGGTCAGCTCGCATCATGATATGCTAATTTGCCTGCCGAGCCCCACTGCAAAGGGGGAAATTGTGAT
CTGCCGAGGCCCCAGCTGAG

Downstream 100 bases:

>100_bases
CCAAAAAATTTTTCACGTCGGGCCTCTGGGATAATTTACTGTACAAAAAATCAGTATATACTGTGTATCAATACAGTACT
TTGATTGCTAATCACACAGG

Product: transporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 315; Mature: 315

Protein sequence:

>315_residues
MFNLLIPLLAVVAVMIAGAASSRLLPGWLERFLNQYVYYLAFPAILYVSLAKTPIEQILNPGFVLGYLLAMVVTYVLVQL
WSLKHEQGQPRPASLRALSATFGNTAFIGIPVLAMLFPDNPQALMAAALASLLSVLMFAVTVVQLRLASQPLTGIARLSL
ALRVVSRNPVVIGCALGVLASAMQFSLPPILEPLVTWIGKSSSPCALFAIGIALARSMREPEHSRVGVPFWHVNLAKLAL
QPLLVWLLFSWFGVDTQLTVMGVLLSAMPTAASVYLLAYQDKTLEKQIARGIVAGTLLTLFSLPLLTMGLNLITQ

Sequences:

>Translated_315_residues
MFNLLIPLLAVVAVMIAGAASSRLLPGWLERFLNQYVYYLAFPAILYVSLAKTPIEQILNPGFVLGYLLAMVVTYVLVQL
WSLKHEQGQPRPASLRALSATFGNTAFIGIPVLAMLFPDNPQALMAAALASLLSVLMFAVTVVQLRLASQPLTGIARLSL
ALRVVSRNPVVIGCALGVLASAMQFSLPPILEPLVTWIGKSSSPCALFAIGIALARSMREPEHSRVGVPFWHVNLAKLAL
QPLLVWLLFSWFGVDTQLTVMGVLLSAMPTAASVYLLAYQDKTLEKQIARGIVAGTLLTLFSLPLLTMGLNLITQ
>Mature_315_residues
MFNLLIPLLAVVAVMIAGAASSRLLPGWLERFLNQYVYYLAFPAILYVSLAKTPIEQILNPGFVLGYLLAMVVTYVLVQL
WSLKHEQGQPRPASLRALSATFGNTAFIGIPVLAMLFPDNPQALMAAALASLLSVLMFAVTVVQLRLASQPLTGIARLSL
ALRVVSRNPVVIGCALGVLASAMQFSLPPILEPLVTWIGKSSSPCALFAIGIALARSMREPEHSRVGVPFWHVNLAKLAL
QPLLVWLLFSWFGVDTQLTVMGVLLSAMPTAASVYLLAYQDKTLEKQIARGIVAGTLLTLFSLPLLTMGLNLITQ

Specific function: Unknown

COG id: COG0679

COG function: function code R; Predicted permeases

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the auxin efflux carrier (TC 2.A.69) family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004776 [H]

Pfam domain/function: PF03547 Mem_trans [H]

EC number: NA

Molecular weight: Translated: 34048; Mature: 34048

Theoretical pI: Translated: 10.11; Mature: 10.11

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFNLLIPLLAVVAVMIAGAASSRLLPGWLERFLNQYVYYLAFPAILYVSLAKTPIEQILN
CHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
PGFVLGYLLAMVVTYVLVQLWSLKHEQGQPRPASLRALSATFGNTAFIGIPVLAMLFPDN
CHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHCCCC
PQALMAAALASLLSVLMFAVTVVQLRLASQPLTGIARLSLALRVVSRNPVVIGCALGVLA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCEEEHHHHHHHH
SAMQFSLPPILEPLVTWIGKSSSPCALFAIGIALARSMREPEHSRVGVPFWHVNLAKLAL
HHHHHCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHH
QPLLVWLLFSWFGVDTQLTVMGVLLSAMPTAASVYLLAYQDKTLEKQIARGIVAGTLLTL
HHHHHHHHHHHHCCCHHHHHHHHHHHHCCHHHHEEEEEECCHHHHHHHHHHHHHHHHHHH
FSLPLLTMGLNLITQ
HHHHHHHHHHHHHCC
>Mature Secondary Structure
MFNLLIPLLAVVAVMIAGAASSRLLPGWLERFLNQYVYYLAFPAILYVSLAKTPIEQILN
CHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
PGFVLGYLLAMVVTYVLVQLWSLKHEQGQPRPASLRALSATFGNTAFIGIPVLAMLFPDN
CHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHCCCC
PQALMAAALASLLSVLMFAVTVVQLRLASQPLTGIARLSLALRVVSRNPVVIGCALGVLA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCEEEHHHHHHHH
SAMQFSLPPILEPLVTWIGKSSSPCALFAIGIALARSMREPEHSRVGVPFWHVNLAKLAL
HHHHHCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHH
QPLLVWLLFSWFGVDTQLTVMGVLLSAMPTAASVYLLAYQDKTLEKQIARGIVAGTLLTL
HHHHHHHHHHHHCCCHHHHHHHHHHHHCCHHHHEEEEEECCHHHHHHHHHHHHHHHHHHH
FSLPLLTMGLNLITQ
HHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 10858449; 11481430 [H]