| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
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The map label for this gene is torA [H]
Identifier: 119774124
GI number: 119774124
Start: 1194019
End: 1196508
Strand: Reverse
Name: torA [H]
Synonym: Sama_0987
Alternate gene names: 119774124
Gene position: 1196508-1194019 (Counterclockwise)
Preceding gene: 119774125
Following gene: 119774123
Centisome position: 27.79
GC content: 58.11
Gene sequence:
>2490_bases ATGAAAAGACGTGATTTTTTAAAAGGCCTGATGTCAGCCTCCTGTATGGCCATAGGCTCCACCAGCCTGCTGAGCCCATT GAACGCACTGGCCGCGCCCCGCGGCCGTGACGAGTGGCTTACCACCGGCAGTCACTTTGGCGCCTTTAAAATTCGCCGTA AAAACGGCGTGATTGCCGAGGTGAAACCCTTCGAGCTGGACAAGTATCCAACGGATATGATTAACGGCATCAAGGGCCTG GTGTACAACCCATCCCGTATTCGCTATCCCATGGTCAGGCTCGACTTTTACAAGAACGGCCACAGGAGCAATACCGCCGA GCGCGGCGACTTCCGCTTTGTGCGGGTGACCTGGGATGAGGCGCTGGAGCTTTTCAAAGCGTCGCTGGATGAAATACAGA CCAAGTATGGCCCAAGCGGCCTGCACGCCGGCCAAACCGGCTGGCGCGCCACCGGTCAGCTACATTCTTCCACCAGCCAT ATGCAGCGTGCGGTGAGCATGCACGGCAACTTCGTCAAAAAGGTGGGCGACTACTCCACCGGCGCGGGCCAGACCATTCT GCCTTACGTGCTCGGCTCCACTGAAGTGTATGCCCAGGGCACATCCTGGCCGCTGATTTTGAAAAACACCAAGACCCTGA TTTTGTGGTCTAACGATCCGGTGAAGAACCTGCAGGTGGGCTGGAACGCCGAAACCCATGAGTCCTACGCCTATCTCGCC GAGCTCAAAGCGAAAGTGGCCAAGGGGGAAATTCGGGTCATCAGCATCGACCCAGTGGAAACCAAGACCCAGGCTTACCT TGGCTGCGAGCGGCTATACATCAACCCCCAGACCGACGTGGCCATGATGCTCGCAATCGCTCACGAGCTGTATCAGCAAA AGCTGTACGACGCCGAGTTTGTGAAGGGCTACAGCCTGGGCTTTGAGGACTTTTTGCCTTATCTGCTTGGCAAAACCGAC AACACTCCCAAAACGCCTGAGTGGGCCGAAGCCATTTGCGGCGTGAGCGCAGCAACCATTCGCGACCTCGCCAAAGTGAT GGTGAAAGACCGCACCCAAATCATGATGGGCTGGTGTATCCAGCGCCAGCAGCATGGCGAGCAGCCGTACTGGATGGCAG CGGTACTGGCCACCATGATAGGTCAGATTGGTCTGCCGGGCGGTGGCATCAGCTATGGCCACCACTACTCCAGCATCGGC GTGCCGGCCACCTCGGCGGCAGCCCCCGGCGCCTTCCCCCGTAACCTCGATGAAGGCAAAAAGCCGCTGTTTGACAGCAA CGACTTCAAAGGCGCCAGCAGCACCATTCCGGTGGCGCGCTGGGTGGATGCCATCCTTGAGCCCGGCAAAACCATCGACG CCAACGGCAGCCGGGTGACTTACCCCGATATCAAGATGATGGTGTTCTCGGGCAACAACCCCTGGAACCACCATCAGGAC AGAAACCGCATGAAGCAGGCGTTCCAGAAACTGGAAGCCGTGGTCACCATAGATGTGAACTGGACCGCCACCGCCCGCTT CAGTGACATAGTGCTGCCCGCCTGCACCACGCTGGAGCGCAACGATATCGACGTGTACGGCAGCTACGCGAGCCGCGGCA TTTTGGCGATGCACAAGATGGTGGAGCCGCTGTTCGACAGTCTGTCCGATTTTGACATCTTCACCCGTTTTGCCGCCATC CTTGGCCGCGAACAGGAATACACCCGCGGCATGAATGAAATGCAGTGGATTGAGCACCTGTACAACGAGTGTCGTGAGGC CAACAAGGCCAAGTACCCAATGCCGGACTTCCAGACGTTCTGGAAAGAAGGCTATGTGCACTTTGGTGAAGGTGAAGAGT GGACCCGTCATGCGGATTTCCGTGCCGATCCGGAAATCAACCCGCTTGGTACGCCGTCTGGTCTGATTGAAATTTTCAGC CGCAAGATTGCCGCCTTTAACTACGATGACTGCCCCGGCCACCCCAAGTGGATGGAGAAAAAGGAGCGCAGCCACGGTGG CCCCGGCAGCGACAAGCACCCACTGTGGCTGCAATCCTGCCACCCGGACAAGCGCCTGCACTCACAGATGTGTGAAAGCG AAGAGTACCGCGCTACCTATACAGTTAAAGGCCGCGAGCCTGTGTACATCAGCCCCGAGGATGCCAAGGCCCGTGGCGTG AAAGACGGTGACTTAGTGCGGGTCTTCAATGACCGCGGCCAGGTGCTGGCCGGCGCCGTGATTTCCAAGCGCTTCCCCAA AGGGGTTATCCGTATCCACGAAGGCGCCTGGTATGGCCCTGTGGGCAAGGATGGCAGCAAAGAAGGCGGCAGCGAAATCG GCGCCCTTTGCTCTTTTGGTGACCCCAACACCCTGACCATGGACATTGGTACCTCCAAACTGGCGCAGGCCTGTGCGGCC TACACCTGTCTGGTGGACTTTGAGAAGTTCGAGGGCAAGGTGCCCGAGGTCAGCTCATTCACAGGCCCTGTGGAGGTTAA TCTGTCATGA
Upstream 100 bases:
>100_bases TCGTCAACATGGATCAGGACACCCAGGCGCTGGTACAGAAGTACCTGCAGGAACACTCAGCCACCTTTAACAAAGATGCC CACTAAGGGGAGACAGTCAG
Downstream 100 bases:
>100_bases ACAAGATGTCTCATTCCGAAGAGTTCGCCGCAGGCGAAATGAATGCCATCCGCGCCTCAGTGTGGCAACTGCTAAGCTCG CTCTACGCCAAAGAGCTGAG
Product: trimethylamine-N-oxide reductase
Products: NA
Alternate protein names: TMAO reductase; Trimethylamine oxidase [H]
Number of amino acids: Translated: 829; Mature: 829
Protein sequence:
>829_residues MKRRDFLKGLMSASCMAIGSTSLLSPLNALAAPRGRDEWLTTGSHFGAFKIRRKNGVIAEVKPFELDKYPTDMINGIKGL VYNPSRIRYPMVRLDFYKNGHRSNTAERGDFRFVRVTWDEALELFKASLDEIQTKYGPSGLHAGQTGWRATGQLHSSTSH MQRAVSMHGNFVKKVGDYSTGAGQTILPYVLGSTEVYAQGTSWPLILKNTKTLILWSNDPVKNLQVGWNAETHESYAYLA ELKAKVAKGEIRVISIDPVETKTQAYLGCERLYINPQTDVAMMLAIAHELYQQKLYDAEFVKGYSLGFEDFLPYLLGKTD NTPKTPEWAEAICGVSAATIRDLAKVMVKDRTQIMMGWCIQRQQHGEQPYWMAAVLATMIGQIGLPGGGISYGHHYSSIG VPATSAAAPGAFPRNLDEGKKPLFDSNDFKGASSTIPVARWVDAILEPGKTIDANGSRVTYPDIKMMVFSGNNPWNHHQD RNRMKQAFQKLEAVVTIDVNWTATARFSDIVLPACTTLERNDIDVYGSYASRGILAMHKMVEPLFDSLSDFDIFTRFAAI LGREQEYTRGMNEMQWIEHLYNECREANKAKYPMPDFQTFWKEGYVHFGEGEEWTRHADFRADPEINPLGTPSGLIEIFS RKIAAFNYDDCPGHPKWMEKKERSHGGPGSDKHPLWLQSCHPDKRLHSQMCESEEYRATYTVKGREPVYISPEDAKARGV KDGDLVRVFNDRGQVLAGAVISKRFPKGVIRIHEGAWYGPVGKDGSKEGGSEIGALCSFGDPNTLTMDIGTSKLAQACAA YTCLVDFEKFEGKVPEVSSFTGPVEVNLS
Sequences:
>Translated_829_residues MKRRDFLKGLMSASCMAIGSTSLLSPLNALAAPRGRDEWLTTGSHFGAFKIRRKNGVIAEVKPFELDKYPTDMINGIKGL VYNPSRIRYPMVRLDFYKNGHRSNTAERGDFRFVRVTWDEALELFKASLDEIQTKYGPSGLHAGQTGWRATGQLHSSTSH MQRAVSMHGNFVKKVGDYSTGAGQTILPYVLGSTEVYAQGTSWPLILKNTKTLILWSNDPVKNLQVGWNAETHESYAYLA ELKAKVAKGEIRVISIDPVETKTQAYLGCERLYINPQTDVAMMLAIAHELYQQKLYDAEFVKGYSLGFEDFLPYLLGKTD NTPKTPEWAEAICGVSAATIRDLAKVMVKDRTQIMMGWCIQRQQHGEQPYWMAAVLATMIGQIGLPGGGISYGHHYSSIG VPATSAAAPGAFPRNLDEGKKPLFDSNDFKGASSTIPVARWVDAILEPGKTIDANGSRVTYPDIKMMVFSGNNPWNHHQD RNRMKQAFQKLEAVVTIDVNWTATARFSDIVLPACTTLERNDIDVYGSYASRGILAMHKMVEPLFDSLSDFDIFTRFAAI LGREQEYTRGMNEMQWIEHLYNECREANKAKYPMPDFQTFWKEGYVHFGEGEEWTRHADFRADPEINPLGTPSGLIEIFS RKIAAFNYDDCPGHPKWMEKKERSHGGPGSDKHPLWLQSCHPDKRLHSQMCESEEYRATYTVKGREPVYISPEDAKARGV KDGDLVRVFNDRGQVLAGAVISKRFPKGVIRIHEGAWYGPVGKDGSKEGGSEIGALCSFGDPNTLTMDIGTSKLAQACAA YTCLVDFEKFEGKVPEVSSFTGPVEVNLS >Mature_829_residues MKRRDFLKGLMSASCMAIGSTSLLSPLNALAAPRGRDEWLTTGSHFGAFKIRRKNGVIAEVKPFELDKYPTDMINGIKGL VYNPSRIRYPMVRLDFYKNGHRSNTAERGDFRFVRVTWDEALELFKASLDEIQTKYGPSGLHAGQTGWRATGQLHSSTSH MQRAVSMHGNFVKKVGDYSTGAGQTILPYVLGSTEVYAQGTSWPLILKNTKTLILWSNDPVKNLQVGWNAETHESYAYLA ELKAKVAKGEIRVISIDPVETKTQAYLGCERLYINPQTDVAMMLAIAHELYQQKLYDAEFVKGYSLGFEDFLPYLLGKTD NTPKTPEWAEAICGVSAATIRDLAKVMVKDRTQIMMGWCIQRQQHGEQPYWMAAVLATMIGQIGLPGGGISYGHHYSSIG VPATSAAAPGAFPRNLDEGKKPLFDSNDFKGASSTIPVARWVDAILEPGKTIDANGSRVTYPDIKMMVFSGNNPWNHHQD RNRMKQAFQKLEAVVTIDVNWTATARFSDIVLPACTTLERNDIDVYGSYASRGILAMHKMVEPLFDSLSDFDIFTRFAAI LGREQEYTRGMNEMQWIEHLYNECREANKAKYPMPDFQTFWKEGYVHFGEGEEWTRHADFRADPEINPLGTPSGLIEIFS RKIAAFNYDDCPGHPKWMEKKERSHGGPGSDKHPLWLQSCHPDKRLHSQMCESEEYRATYTVKGREPVYISPEDAKARGV KDGDLVRVFNDRGQVLAGAVISKRFPKGVIRIHEGAWYGPVGKDGSKEGGSEIGALCSFGDPNTLTMDIGTSKLAQACAA YTCLVDFEKFEGKVPEVSSFTGPVEVNLS
Specific function: Reduces trimethylamine-N-oxide (TMAO) into trimethylamine; an anaerobic reaction coupled to energy-yielding reactions [H]
COG id: COG0243
COG function: function code C; Anaerobic dehydrogenases, typically selenocysteine-containing
Gene ontology:
Cell location: Periplasm [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the prokaryotic molybdopterin-containing oxidoreductase family [H]
Homologues:
Organism=Escherichia coli, GI1787231, Length=834, Percent_Identity=52.5179856115108, Blast_Score=885, Evalue=0.0, Organism=Escherichia coli, GI87081994, Length=842, Percent_Identity=39.5486935866983, Blast_Score=608, Evalue=1e-175, Organism=Escherichia coli, GI145693196, Length=794, Percent_Identity=38.4130982367758, Blast_Score=567, Evalue=1e-162, Organism=Escherichia coli, GI87081797, Length=872, Percent_Identity=28.6697247706422, Blast_Score=278, Evalue=1e-75, Organism=Escherichia coli, GI1787870, Length=771, Percent_Identity=29.05317769131, Blast_Score=247, Evalue=2e-66, Organism=Escherichia coli, GI171474008, Length=774, Percent_Identity=28.4237726098191, Blast_Score=228, Evalue=1e-60, Organism=Escherichia coli, GI3868721, Length=713, Percent_Identity=24.1234221598878, Blast_Score=128, Evalue=2e-30,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR009010 - InterPro: IPR006657 - InterPro: IPR006656 - InterPro: IPR006655 - InterPro: IPR006311 - InterPro: IPR011887 [H]
Pfam domain/function: PF00384 Molybdopterin; PF01568 Molydop_binding [H]
EC number: =1.7.2.3 [H]
Molecular weight: Translated: 92532; Mature: 92532
Theoretical pI: Translated: 7.48; Mature: 7.48
Prosite motif: PS00490 MOLYBDOPTERIN_PROK_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 3.0 %Met (Translated Protein) 4.5 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 3.0 %Met (Mature Protein) 4.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKRRDFLKGLMSASCMAIGSTSLLSPLNALAAPRGRDEWLTTGSHFGAFKIRRKNGVIAE CCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCHHCCCCCCCCEEEEEECCCCEEE VKPFELDKYPTDMINGIKGLVYNPSRIRYPMVRLDFYKNGHRSNTAERGDFRFVRVTWDE CCCCCCCCCCHHHHCCCCCEEECCCCCCCEEEEEEEECCCCCCCCCCCCCEEEEEEEHHH ALELFKASLDEIQTKYGPSGLHAGQTGWRATGQLHSSTSHMQRAVSMHGNFVKKVGDYST HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHCCCCC GAGQTILPYVLGSTEVYAQGTSWPLILKNTKTLILWSNDPVKNLQVGWNAETHESYAYLA CCCCEEHHHHCCCCEEEECCCCCEEEEECCEEEEEECCCCCCCEEECCCCCCHHHHHHHH ELKAKVAKGEIRVISIDPVETKTQAYLGCERLYINPQTDVAMMLAIAHELYQQKLYDAEF HHHHHHCCCCEEEEEECCCCCHHHHHHCEEEEEECCCHHHHHHHHHHHHHHHHHHCCHHH VKGYSLGFEDFLPYLLGKTDNTPKTPEWAEAICGVSAATIRDLAKVMVKDRTQIMMGWCI HHHHCCCHHHHHHHHHCCCCCCCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHH QRQQHGEQPYWMAAVLATMIGQIGLPGGGISYGHHYSSIGVPATSAAAPGAFPRNLDEGK HHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC KPLFDSNDFKGASSTIPVARWVDAILEPGKTIDANGSRVTYPDIKMMVFSGNNPWNHHQD CCCCCCCCCCCCCCCCCHHHHHHHHHCCCCEECCCCCEEECCCEEEEEECCCCCCCCCHH RNRMKQAFQKLEAVVTIDVNWTATARFSDIVLPACTTLERNDIDVYGSYASRGILAMHKM HHHHHHHHHHCCEEEEEEECCEEECCCCCEEEHHHCCCCCCCCEEEECHHHCHHHHHHHH VEPLFDSLSDFDIFTRFAAILGREQEYTRGMNEMQWIEHLYNECREANKAKYPMPDFQTF HHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHH WKEGYVHFGEGEEWTRHADFRADPEINPLGTPSGLIEIFSRKIAAFNYDDCPGHPKWMEK HHCCCEECCCCCCCHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHH KERSHGGPGSDKHPLWLQSCHPDKRLHSQMCESEEYRATYTVKGREPVYISPEDAKARGV HHHCCCCCCCCCCCEEEECCCCHHHHHHHHCCCCCCEEEEEECCCCCEEECCCCHHHCCC KDGDLVRVFNDRGQVLAGAVISKRFPKGVIRIHEGAWYGPVGKDGSKEGGSEIGALCSFG CCCCEEEEECCCCCEEHHHHHHHHCCCCEEEEECCCEECCCCCCCCCCCCHHHHHEECCC DPNTLTMDIGTSKLAQACAAYTCLVDFEKFEGKVPEVSSFTGPVEVNLS CCCEEEEECCHHHHHHHHHHHHHEEEHHHHCCCCCCCCCCCCCEEEEEC >Mature Secondary Structure MKRRDFLKGLMSASCMAIGSTSLLSPLNALAAPRGRDEWLTTGSHFGAFKIRRKNGVIAE CCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCHHCCCCCCCCEEEEEECCCCEEE VKPFELDKYPTDMINGIKGLVYNPSRIRYPMVRLDFYKNGHRSNTAERGDFRFVRVTWDE CCCCCCCCCCHHHHCCCCCEEECCCCCCCEEEEEEEECCCCCCCCCCCCCEEEEEEEHHH ALELFKASLDEIQTKYGPSGLHAGQTGWRATGQLHSSTSHMQRAVSMHGNFVKKVGDYST HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHCCCCC GAGQTILPYVLGSTEVYAQGTSWPLILKNTKTLILWSNDPVKNLQVGWNAETHESYAYLA CCCCEEHHHHCCCCEEEECCCCCEEEEECCEEEEEECCCCCCCEEECCCCCCHHHHHHHH ELKAKVAKGEIRVISIDPVETKTQAYLGCERLYINPQTDVAMMLAIAHELYQQKLYDAEF HHHHHHCCCCEEEEEECCCCCHHHHHHCEEEEEECCCHHHHHHHHHHHHHHHHHHCCHHH VKGYSLGFEDFLPYLLGKTDNTPKTPEWAEAICGVSAATIRDLAKVMVKDRTQIMMGWCI HHHHCCCHHHHHHHHHCCCCCCCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHH QRQQHGEQPYWMAAVLATMIGQIGLPGGGISYGHHYSSIGVPATSAAAPGAFPRNLDEGK HHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC KPLFDSNDFKGASSTIPVARWVDAILEPGKTIDANGSRVTYPDIKMMVFSGNNPWNHHQD CCCCCCCCCCCCCCCCCHHHHHHHHHCCCCEECCCCCEEECCCEEEEEECCCCCCCCCHH RNRMKQAFQKLEAVVTIDVNWTATARFSDIVLPACTTLERNDIDVYGSYASRGILAMHKM HHHHHHHHHHCCEEEEEEECCEEECCCCCEEEHHHCCCCCCCCEEEECHHHCHHHHHHHH VEPLFDSLSDFDIFTRFAAILGREQEYTRGMNEMQWIEHLYNECREANKAKYPMPDFQTF HHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHH WKEGYVHFGEGEEWTRHADFRADPEINPLGTPSGLIEIFSRKIAAFNYDDCPGHPKWMEK HHCCCEECCCCCCCHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHH KERSHGGPGSDKHPLWLQSCHPDKRLHSQMCESEEYRATYTVKGREPVYISPEDAKARGV HHHCCCCCCCCCCCEEEECCCCHHHHHHHHCCCCCCEEEEEECCCCCEEECCCCHHHCCC KDGDLVRVFNDRGQVLAGAVISKRFPKGVIRIHEGAWYGPVGKDGSKEGGSEIGALCSFG CCCCEEEEECCCCCEEHHHHHHHHCCCCEEEEECCCEECCCCCCCCCCCCHHHHHEECCC DPNTLTMDIGTSKLAQACAAYTCLVDFEKFEGKVPEVSSFTGPVEVNLS CCCEEEEECCHHHHHHHHHHHHHEEEHHHHCCCCCCCCCCCCCEEEEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9813127; 9813128 [H]