| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
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The map label for this gene is 119774077
Identifier: 119774077
GI number: 119774077
Start: 1136632
End: 1137324
Strand: Reverse
Name: 119774077
Synonym: Sama_0940
Alternate gene names: NA
Gene position: 1137324-1136632 (Counterclockwise)
Preceding gene: 119774089
Following gene: 119774074
Centisome position: 26.41
GC content: 48.63
Gene sequence:
>693_bases ATGACTGCGCAGTACGTTCCTCTCAATAATACCGCTCACAAAAACCTGAAAGTTAAGCAAGCCCTTGAACTTGCTGAATT TGAAAAGCATCACATGCTGCCCTTGGTTGTTCAGGAATTTATGCCCGCAGCCACCAGTTTCCCCATCATTTTTGCCAAAA ACACCGACAGCGGTGAGTATCAGCCAGTGGCTGTGACCTCTCTGAAGCCAGAGAGCAACAAATTTATCAAAGATGGTAAA TGGACCCAGCGCTATGTGCCTATGCAGCTGCGCGTGGCGCCTTTTATCGCTGGCCCTGATGAAACTCAGGAAAAGCTGCT GATTGGTATTAATCAAAGCAGTACCCTGCTGAGCGAAGAAGAAGGCATCGCGCTGTTTAATGAAAACGGCGAACAAACTG AATTCCTGCAAGACCGCGTGAAATTTATCGGCCAGCTGTTCGACTTCCGTGAGTTGACCAAGCAGTTTGTAAAAACCCTG ACTGATCATGACTTGCTGCAGCCAAAAACCCTGACAGTGAATGGCAAAGACGGCGAGAAAGCCAACTACGACGGCATCTA CATGGTTGATGAGAAGAAGCTGCACGAGCTGAGCGATGAAGCCAAGCTTGAGCTGTTCAACAAGGGCGCCCTGTCAGCCA TTTATGCTCACCTGGCATCACTGAATCAAATCGACCTGGTGATGGGCGAATAA
Upstream 100 bases:
>100_bases CATCGGGCCTTCGGTGTCCGGTAGCGTCAGCTTCAACGGCCCTTCTGTGACGTACAGAGTTGGCCAGGACCCTAGATTTA TAAATAAAGGATAATAACAA
Downstream 100 bases:
>100_bases TCCCAAAAGGCATAGAAAAAGCCGGGGTTACCCGGCTTTTTTATTTAACGCACCTACACCATCACGGCTATGATGCCCGT GCCATGGCCGCCTTCAGACC
Product: hypothetical protein
Products: NA
Alternate protein names: SapC-Related Protein; SapC-Like Protein; SapC Related Protein; SapC Protein; SapC Superfamily; SapC Superfamily Protein; SAPC Family Protein; Sapc Family Protein
Number of amino acids: Translated: 230; Mature: 229
Protein sequence:
>230_residues MTAQYVPLNNTAHKNLKVKQALELAEFEKHHMLPLVVQEFMPAATSFPIIFAKNTDSGEYQPVAVTSLKPESNKFIKDGK WTQRYVPMQLRVAPFIAGPDETQEKLLIGINQSSTLLSEEEGIALFNENGEQTEFLQDRVKFIGQLFDFRELTKQFVKTL TDHDLLQPKTLTVNGKDGEKANYDGIYMVDEKKLHELSDEAKLELFNKGALSAIYAHLASLNQIDLVMGE
Sequences:
>Translated_230_residues MTAQYVPLNNTAHKNLKVKQALELAEFEKHHMLPLVVQEFMPAATSFPIIFAKNTDSGEYQPVAVTSLKPESNKFIKDGK WTQRYVPMQLRVAPFIAGPDETQEKLLIGINQSSTLLSEEEGIALFNENGEQTEFLQDRVKFIGQLFDFRELTKQFVKTL TDHDLLQPKTLTVNGKDGEKANYDGIYMVDEKKLHELSDEAKLELFNKGALSAIYAHLASLNQIDLVMGE >Mature_229_residues TAQYVPLNNTAHKNLKVKQALELAEFEKHHMLPLVVQEFMPAATSFPIIFAKNTDSGEYQPVAVTSLKPESNKFIKDGKW TQRYVPMQLRVAPFIAGPDETQEKLLIGINQSSTLLSEEEGIALFNENGEQTEFLQDRVKFIGQLFDFRELTKQFVKTLT DHDLLQPKTLTVNGKDGEKANYDGIYMVDEKKLHELSDEAKLELFNKGALSAIYAHLASLNQIDLVMGE
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 26003; Mature: 25872
Theoretical pI: Translated: 5.01; Mature: 5.01
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 2.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTAQYVPLNNTAHKNLKVKQALELAEFEKHHMLPLVVQEFMPAATSFPIIFAKNTDSGEY CCCEEECCCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCCCEEEEECCCCCCC QPVAVTSLKPESNKFIKDGKWTQRYVPMQLRVAPFIAGPDETQEKLLIGINQSSTLLSEE CCEEEEEECCCCCCEECCCCCCCEECCEEEEEEEEECCCCCCCCEEEEEECCCCCEECCC EGIALFNENGEQTEFLQDRVKFIGQLFDFRELTKQFVKTLTDHDLLQPKTLTVNGKDGEK CCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCC ANYDGIYMVDEKKLHELSDEAKLELFNKGALSAIYAHLASLNQIDLVMGE CCCCCEEEECHHHHHHCCCHHHHHHHCCCHHHHHHHHHHCCCCEEEEECC >Mature Secondary Structure TAQYVPLNNTAHKNLKVKQALELAEFEKHHMLPLVVQEFMPAATSFPIIFAKNTDSGEY CCEEECCCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCCCEEEEECCCCCCC QPVAVTSLKPESNKFIKDGKWTQRYVPMQLRVAPFIAGPDETQEKLLIGINQSSTLLSEE CCEEEEEECCCCCCEECCCCCCCEECCEEEEEEEEECCCCCCCCEEEEEECCCCCEECCC EGIALFNENGEQTEFLQDRVKFIGQLFDFRELTKQFVKTLTDHDLLQPKTLTVNGKDGEK CCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCC ANYDGIYMVDEKKLHELSDEAKLELFNKGALSAIYAHLASLNQIDLVMGE CCCCCEEEECHHHHHHCCCHHHHHHHCCCHHHHHHHHHHCCCCEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA