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The map label for this gene is yfjD [H]

Identifier: 119774023

GI number: 119774023

Start: 1074108

End: 1075397

Strand: Reverse

Name: yfjD [H]

Synonym: Sama_0886

Alternate gene names: 119774023

Gene position: 1075397-1074108 (Counterclockwise)

Preceding gene: 119774024

Following gene: 119774010

Centisome position: 24.97

GC content: 53.8

Gene sequence:

>1290_bases
TTGGACGCGATATCGACCGGAACACTCCTGCTGTCGCTTTTAGTGTTAATCCTCATTTCTGCCTATTTCTCTGGCTCTGA
AACGGCCATGATGTCTTTGAACCGCTATCGGCTCAGACATTTGGCCAGCAACGGACACAAGGGCGCCAAACGCGCATCCA
AGCTGCTGGACCGCCCCGACCGCCTGATTGGCCTTATCCTGATTGGTAACAACCTGGTGAACATCCTCGCCTCCGCCATA
GCGACCATTATTGGTATGCGGATATGGGGCGACGTGGGTGTGGCCATCGCCACAGGTTTGCTGACCGTGGTAGTGCTGGT
ATTTGCCGAAGTCACCCCAAAGACAGTGGCCGCGCTGCATCCTGAGCGCATCGCTTACCCCTCGAGCCTGCTGCTTAAAT
GGCTGCTGGTGATATTGCAGCCCCTGGTGAAGGTGATGAATATCATCACCTCCGGCATTTTGCGGCTTATTGGTATTCGC
AACGTGGCGACCAATGATGCCCTCAGCCAGGAAGAACTGCGCACTGTGGTACACGAGGCCGGCGCCCTTATCCCCCAGCG
TCACCAGGACATGCTGCTGTCAATACTCGACCTCGAGAAGGTGACGGTGGAAGACATCATGATCCCCCGCGCCGAAATTT
ATGCCATCAACGTCAACGATGACTTCAAACAGATTAACCGTCAGGTGGTCACCAGCCCCCATACCCGGGTACTGGTATAC
CGCGACACCATAGACGACGCCGTAGGCTTTATTCACCTGAGAGACGCCTTACGCCTGCAGTCCAAGGAAGAGTTCAGCAA
AGCCACTCTGCTCAGAGCTGTAAAAGAACTCTACTTTATCCCCGAGGGCACCCCCCTTAACGTGCAACTGGCCAACTTCC
AGCATAACAAGGAACGTATTGGTCTGGTGGTCGATGAATACGGTGATATTCAGGGTCTGGTCACACTGGAAGACATTCTT
GAAGAGATTGTGGGTGATTTCACCACCTCTATGGTGCCGACTGCCAGTGAAGAGATCCATCCTCAGGAAGATGGCAGCCT
GCTTATCGATGCGAGTATCAACATCCGCGAGCTGAATAAAGAAATGAAGTGGGAACTGCCCACTGACGGCCCGAAAACGC
TGAACGGCCTTATCCTCGAATACCTGGAAGACATCCCCTCCCCCAATACCAGTTTACGCCTCGAAGGCTACCCCATTGAG
GTGATGGAAGTGGCCGAAAATATGGTGAAAACCGTGAGGGTGATGCCGGATCTGTATCAGGCCCCCGATAACGCAAAAAA
GACGCCATGA

Upstream 100 bases:

>100_bases
AGTTAAGTCCCCGTCCGGGGGCTTAGCCCCTTGGCTAACTTGACACCCCTTTAAAATGCCAGTATTTACTTACATCTCCT
GGCCATAGTGGAGCCTTTGC

Downstream 100 bases:

>100_bases
GCGTCTTTTTTCTTATCATGTCTCTTTCAATCAAGCGGTCTTGCGGCTCGCTTCAAGCACTCTTCGCAGCGCTATGGCCT
GTGGCGTAATCTCACGCTCG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 429; Mature: 429

Protein sequence:

>429_residues
MDAISTGTLLLSLLVLILISAYFSGSETAMMSLNRYRLRHLASNGHKGAKRASKLLDRPDRLIGLILIGNNLVNILASAI
ATIIGMRIWGDVGVAIATGLLTVVVLVFAEVTPKTVAALHPERIAYPSSLLLKWLLVILQPLVKVMNIITSGILRLIGIR
NVATNDALSQEELRTVVHEAGALIPQRHQDMLLSILDLEKVTVEDIMIPRAEIYAINVNDDFKQINRQVVTSPHTRVLVY
RDTIDDAVGFIHLRDALRLQSKEEFSKATLLRAVKELYFIPEGTPLNVQLANFQHNKERIGLVVDEYGDIQGLVTLEDIL
EEIVGDFTTSMVPTASEEIHPQEDGSLLIDASINIRELNKEMKWELPTDGPKTLNGLILEYLEDIPSPNTSLRLEGYPIE
VMEVAENMVKTVRVMPDLYQAPDNAKKTP

Sequences:

>Translated_429_residues
MDAISTGTLLLSLLVLILISAYFSGSETAMMSLNRYRLRHLASNGHKGAKRASKLLDRPDRLIGLILIGNNLVNILASAI
ATIIGMRIWGDVGVAIATGLLTVVVLVFAEVTPKTVAALHPERIAYPSSLLLKWLLVILQPLVKVMNIITSGILRLIGIR
NVATNDALSQEELRTVVHEAGALIPQRHQDMLLSILDLEKVTVEDIMIPRAEIYAINVNDDFKQINRQVVTSPHTRVLVY
RDTIDDAVGFIHLRDALRLQSKEEFSKATLLRAVKELYFIPEGTPLNVQLANFQHNKERIGLVVDEYGDIQGLVTLEDIL
EEIVGDFTTSMVPTASEEIHPQEDGSLLIDASINIRELNKEMKWELPTDGPKTLNGLILEYLEDIPSPNTSLRLEGYPIE
VMEVAENMVKTVRVMPDLYQAPDNAKKTP
>Mature_429_residues
MDAISTGTLLLSLLVLILISAYFSGSETAMMSLNRYRLRHLASNGHKGAKRASKLLDRPDRLIGLILIGNNLVNILASAI
ATIIGMRIWGDVGVAIATGLLTVVVLVFAEVTPKTVAALHPERIAYPSSLLLKWLLVILQPLVKVMNIITSGILRLIGIR
NVATNDALSQEELRTVVHEAGALIPQRHQDMLLSILDLEKVTVEDIMIPRAEIYAINVNDDFKQINRQVVTSPHTRVLVY
RDTIDDAVGFIHLRDALRLQSKEEFSKATLLRAVKELYFIPEGTPLNVQLANFQHNKERIGLVVDEYGDIQGLVTLEDIL
EEIVGDFTTSMVPTASEEIHPQEDGSLLIDASINIRELNKEMKWELPTDGPKTLNGLILEYLEDIPSPNTSLRLEGYPIE
VMEVAENMVKTVRVMPDLYQAPDNAKKTP

Specific function: Unknown

COG id: COG4536

COG function: function code P; Putative Mg2+ and Co2+ transporter CorB

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 CBS domains [H]

Homologues:

Organism=Homo sapiens, GI310128564, Length=400, Percent_Identity=24.25, Blast_Score=119, Evalue=6e-27,
Organism=Homo sapiens, GI94681046, Length=320, Percent_Identity=24.6875, Blast_Score=79, Evalue=7e-15,
Organism=Homo sapiens, GI40068053, Length=326, Percent_Identity=23.3128834355828, Blast_Score=74, Evalue=4e-13,
Organism=Homo sapiens, GI40068055, Length=326, Percent_Identity=23.3128834355828, Blast_Score=73, Evalue=4e-13,
Organism=Escherichia coli, GI145693175, Length=398, Percent_Identity=60.8040201005025, Blast_Score=517, Evalue=1e-148,
Organism=Escherichia coli, GI1790664, Length=414, Percent_Identity=24.6376811594203, Blast_Score=145, Evalue=7e-36,
Organism=Escherichia coli, GI87082033, Length=273, Percent_Identity=27.8388278388278, Blast_Score=98, Evalue=1e-21,
Organism=Escherichia coli, GI1786879, Length=261, Percent_Identity=24.5210727969349, Blast_Score=90, Evalue=3e-19,
Organism=Escherichia coli, GI1788119, Length=271, Percent_Identity=25.830258302583, Blast_Score=69, Evalue=5e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016169
- InterPro:   IPR000644
- InterPro:   IPR002550
- InterPro:   IPR005170 [H]

Pfam domain/function: PF00571 CBS; PF03471 CorC_HlyC; PF01595 DUF21 [H]

EC number: NA

Molecular weight: Translated: 47637; Mature: 47637

Theoretical pI: Translated: 5.08; Mature: 5.08

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDAISTGTLLLSLLVLILISAYFSGSETAMMSLNRYRLRHLASNGHKGAKRASKLLDRPD
CCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCC
RLIGLILIGNNLVNILASAIATIIGMRIWGDVGVAIATGLLTVVVLVFAEVTPKTVAALH
CEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCC
PERIAYPSSLLLKWLLVILQPLVKVMNIITSGILRLIGIRNVATNDALSQEELRTVVHEA
CHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHH
GALIPQRHQDMLLSILDLEKVTVEDIMIPRAEIYAINVNDDFKQINRQVVTSPHTRVLVY
CCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHHHCCCCCEEEEE
RDTIDDAVGFIHLRDALRLQSKEEFSKATLLRAVKELYFIPEGTPLNVQLANFQHNKERI
ECCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCHHC
GLVVDEYGDIQGLVTLEDILEEIVGDFTTSMVPTASEEIHPQEDGSLLIDASINIRELNK
CEEEECCCCCCCEEEHHHHHHHHHHHHHHHCCCCCCHHCCCCCCCCEEEECCCCHHHHCH
EMKWELPTDGPKTLNGLILEYLEDIPSPNTSLRLEGYPIEVMEVAENMVKTVRVMPDLYQ
HHCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHH
APDNAKKTP
CCCCCCCCC
>Mature Secondary Structure
MDAISTGTLLLSLLVLILISAYFSGSETAMMSLNRYRLRHLASNGHKGAKRASKLLDRPD
CCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCC
RLIGLILIGNNLVNILASAIATIIGMRIWGDVGVAIATGLLTVVVLVFAEVTPKTVAALH
CEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCC
PERIAYPSSLLLKWLLVILQPLVKVMNIITSGILRLIGIRNVATNDALSQEELRTVVHEA
CHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHH
GALIPQRHQDMLLSILDLEKVTVEDIMIPRAEIYAINVNDDFKQINRQVVTSPHTRVLVY
CCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHHHCCCCCEEEEE
RDTIDDAVGFIHLRDALRLQSKEEFSKATLLRAVKELYFIPEGTPLNVQLANFQHNKERI
ECCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCHHC
GLVVDEYGDIQGLVTLEDILEEIVGDFTTSMVPTASEEIHPQEDGSLLIDASINIRELNK
CEEEECCCCCCCEEEHHHHHHHHHHHHHHHCCCCCCHHCCCCCCCCEEEECCCCHHHHCH
EMKWELPTDGPKTLNGLILEYLEDIPSPNTSLRLEGYPIEVMEVAENMVKTVRVMPDLYQ
HHCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHH
APDNAKKTP
CCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503; 3045760 [H]