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The map label for this gene is ypjD [H]

Identifier: 119774024

GI number: 119774024

Start: 1075492

End: 1076280

Strand: Reverse

Name: ypjD [H]

Synonym: Sama_0887

Alternate gene names: 119774024

Gene position: 1076280-1075492 (Counterclockwise)

Preceding gene: 119774035

Following gene: 119774023

Centisome position: 24.99

GC content: 53.87

Gene sequence:

>789_bases
ATGGTTCTTTTCTCTGCGTCAGCCATGTTCTTCTACTGTATCGCCCTGATACTGGTGACCAGTCGACTGTTTCACGCCGA
AGGCCCAAACCGCCGTGCCGTTGCCGCCGTCGCATCCATCGCGGTGGTATTGCACGCCGCCGCCCTGCAGCAAGCCATCT
TTACCGACGATGGTCAGAACTTCAGCCTCACCAACGTGATTTCACTGGTGAACTGGATTATCGCTTTCACCTTCAGCGTG
CTGATTTTCCGTCTGAAAGTGATAGTGGTTGTGCCCGTGGTATATGCCTGTTCTGTATTGTCGGTGGCTCTCTTATGGTT
GGTGCCTCCCAAATACATTACCCACTTTGAGCACAATCCCGAGGTGCTGGCCCACGTGGTGCTGTCACTCATGGCCTACA
GTGCACTGATGATTGCAGCACTGTACGCCATTCAGCTGGCGATGATCCAAAACAAGCTCAAGAAAAAGCAGCTGATATTA
AGCCCGGCCATGCCGCCACTGATGACAGTGGAAAAGCAGCTGTACCATTTGGTGATCATTGGCGTGATCCTGCTCAGCCT
GGGTCTGGCGACCGGCTTTATCTTCCTCGACGACATGTTTGCCGAGGGTAAAGGTCATAAGGCCATTCTCTCCATCATGG
CCTGGTTTGTGTACATCGCCATGCTGTGGCAGCAATACTCAGTGGGTTGCCGTATCCGTACCGCCATCGCCTACACCCTG
ACCGGCGCCACCCTGTTGTCGCTGGCCTATTTTGGCGCCCGCATCGTCAAGGAACTCATTCTCAGTTAA

Upstream 100 bases:

>100_bases
CTGCCCATTTGCGCAAGGGTCGTGTTATTCTAACTTCCAAATCAGCAATCCCGCTTTCGCATCGCGAAGCCCAAGAGAAA
CTAAAAGCAGGTTGTAATCC

Downstream 100 bases:

>100_bases
GTCCCCGTCCGGGGGCTTAGCCCCTTGGCTAACTTGACACCCCTTTAAAATGCCAGTATTTACTTACATCTCCTGGCCAT
AGTGGAGCCTTTGCTTGGAC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 262; Mature: 262

Protein sequence:

>262_residues
MVLFSASAMFFYCIALILVTSRLFHAEGPNRRAVAAVASIAVVLHAAALQQAIFTDDGQNFSLTNVISLVNWIIAFTFSV
LIFRLKVIVVVPVVYACSVLSVALLWLVPPKYITHFEHNPEVLAHVVLSLMAYSALMIAALYAIQLAMIQNKLKKKQLIL
SPAMPPLMTVEKQLYHLVIIGVILLSLGLATGFIFLDDMFAEGKGHKAILSIMAWFVYIAMLWQQYSVGCRIRTAIAYTL
TGATLLSLAYFGARIVKELILS

Sequences:

>Translated_262_residues
MVLFSASAMFFYCIALILVTSRLFHAEGPNRRAVAAVASIAVVLHAAALQQAIFTDDGQNFSLTNVISLVNWIIAFTFSV
LIFRLKVIVVVPVVYACSVLSVALLWLVPPKYITHFEHNPEVLAHVVLSLMAYSALMIAALYAIQLAMIQNKLKKKQLIL
SPAMPPLMTVEKQLYHLVIIGVILLSLGLATGFIFLDDMFAEGKGHKAILSIMAWFVYIAMLWQQYSVGCRIRTAIAYTL
TGATLLSLAYFGARIVKELILS
>Mature_262_residues
MVLFSASAMFFYCIALILVTSRLFHAEGPNRRAVAAVASIAVVLHAAALQQAIFTDDGQNFSLTNVISLVNWIIAFTFSV
LIFRLKVIVVVPVVYACSVLSVALLWLVPPKYITHFEHNPEVLAHVVLSLMAYSALMIAALYAIQLAMIQNKLKKKQLIL
SPAMPPLMTVEKQLYHLVIIGVILLSLGLATGFIFLDDMFAEGKGHKAILSIMAWFVYIAMLWQQYSVGCRIRTAIAYTL
TGATLLSLAYFGARIVKELILS

Specific function: Unknown

COG id: COG4137

COG function: function code R; ABC-type uncharacterized transport system, permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI145693174, Length=262, Percent_Identity=43.1297709923664, Blast_Score=196, Evalue=1e-51,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002541 [H]

Pfam domain/function: PF01578 Cytochrom_C_asm [H]

EC number: NA

Molecular weight: Translated: 28907; Mature: 28907

Theoretical pI: Translated: 9.65; Mature: 9.65

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
5.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVLFSASAMFFYCIALILVTSRLFHAEGPNRRAVAAVASIAVVLHAAALQQAIFTDDGQN
CEEEEHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
FSLTNVISLVNWIIAFTFSVLIFRLKVIVVVPVVYACSVLSVALLWLVPPKYITHFEHNP
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCCH
EVLAHVVLSLMAYSALMIAALYAIQLAMIQNKLKKKQLILSPAMPPLMTVEKQLYHLVII
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
GVILLSLGLATGFIFLDDMFAEGKGHKAILSIMAWFVYIAMLWQQYSVGCRIRTAIAYTL
HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
TGATLLSLAYFGARIVKELILS
HHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure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HHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]