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The map label for this gene is yedQ [H]

Identifier: 119773920

GI number: 119773920

Start: 965648

End: 967426

Strand: Reverse

Name: yedQ [H]

Synonym: Sama_0783

Alternate gene names: 119773920

Gene position: 967426-965648 (Counterclockwise)

Preceding gene: 119773921

Following gene: 119773918

Centisome position: 22.47

GC content: 49.97

Gene sequence:

>1779_bases
ATGAAGCTCCGAAAGCCGTTAATGCGTAATTTTTTAGTTGTCTTCGCATTACTCTCGGTTATTGCCACAGCGGTTAACGC
CGCTGATGGCACCTTAGCGCTTTTAAGAGAGGCAGATTCTCTTCGCTCAAGTAGTCCCATAGAGTTTCAGGACAAACTAA
AAGAGATAGAAAAGCAAGCGGGTGCATTGAATAACTACGAATCAGAATACCTGGCTTACCTACGCGCCTATAATTTGTCA
TTTTCTGGACAGCTGAACGACGCATATCTCATGTATCAAGAATTGGCCCAAAAAAGCCAATTCGATGAATTTAGATTTCG
AGCCTTAACTTCCATGGTCAATACAAATGCCATTCGAAGAGAATGGACGCTCGGCCTGGAAAATTTAAGACAGACTATCG
AAATCCTACCAACTGTCGAGAACATTCAACTTAAAGAGCATGGGCTTGCCGTTGCAGCAGTGTTTTACAACTACCTGGAG
CAACATGCTTTAGCAAAAGAATTCGCCTTACAATTAGCCGAGTCAACCTCGAATCAAAGAAGCCTGTGTTTTGCACTCCA
GCTTAGATTACAAGCAGATACAGGTTTAGGTACGATTGGTATCGGTGACGAACTGTTCCAAATCGCATTGCAACATTGCG
AAACAATTGGTGAGTTGGTGGTTGCGTCCGCTATCGTTTCCTACAAAGCAGAATTATTACTAAAGGACAGCCAAGCGTCG
GAAGCCAGCCAACTATTAGACCAATATTTGGAGCGAGTAAACAACACTGGTTATCCACCAATCATAGCCAGTTTCTATAC
TCTTTTAGCTGAAGCCAACCTGTTGCAAAACAAAAAAGCTGTTGCAGCCGAGTATGCCACTACAGCGTTAAAGTACACTT
CAAGTGCAACCAACGCCGAGGCTGCAATGCGTGCCAACAAGGTGCTGTTTGACTATCACAGCAGCCGCGGCAACAGTGAG
GCGGCGCTGGAGGCCTATATCAAGTACGCCGAGGCCGACAAGGCCTATCTGGACGAGGTGAAAACCAAGACTCTGGCGTT
TCAGTTGGCCGAGCACCAGAGTCTGGAGCAGCAAAACAAAATTAGCCTGCTGGATGAGCAGAATAAACTCCTGAAAGTGC
AGCAGCAGTTGGATCAGGCACAGGCCTATAATAGCCGCCTGCTGATTGCGGTGCTCTTTTGCATCACTCTGGGCCTGGGT
ACTTGGGGCTGGCATTCCTGGCAGAGCCAAAGACGCCTCAAGCAGCTGGCCGAATTCGACAGCCTCACAGGGCTGTTCAG
CCGTGGCCACTTTACCCAGGTATCCCTAAGCGCGGTGGAATACGCCAAAACCCTCAATGCCCCCATCAGCTGTATCCTGC
TGGATGTAGACAAATTCAAACAGATTAACGACCGTCTGGGCCATGCCACCGGCGACTGGGCACTGAAAGAAGTGGCGCGG
ATTTGCAAAGAGCAGGTGCGGGAATATGAGATTTTTGGCCGAATCGGCGGGGAAGAGTTTTGCCTGCTGCTGCCTGAGTG
CGAACTTAAGCATGCCACCGACCTGGCCAATGCCATGTGTCAGGCTCTCAGAGGCGCAGATACCTCGGCCTCGGGGCATA
AATTTGAGCTGACCGCCAGCTTTGGGGTAACCGACAACGCTCGGGCGGGCTATTCCCTCGACAAGCTGATGGCCCAGGCA
GACAAGGCCATGTACAGCGCCAAAAAGCAGGGCCGCAATCAGGTGCAGTGCTACTCTGCCAACCCATCCGTGGCGACAAC
GCCACAGGAAGCAGGATAA

Upstream 100 bases:

>100_bases
GCCCTGAAGGCTGAGCTGGATGTGACACCTGATGTATTCTGTGTTTTCTTTCCTGCTGAGGATGAACCTGAAAAAGAACA
GCAAGAAAATGAGGAAGAGG

Downstream 100 bases:

>100_bases
GTGGCGGCTGCGGCGCTGAAACCGGCTTGAGAGCCCCCTGTCACACGGAGTCACCCAAAGAAAAAGGCCGCAATGCGGCC
TTTTTTGCGGACGTTTAACC

Product: GGDEF domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 592; Mature: 592

Protein sequence:

>592_residues
MKLRKPLMRNFLVVFALLSVIATAVNAADGTLALLREADSLRSSSPIEFQDKLKEIEKQAGALNNYESEYLAYLRAYNLS
FSGQLNDAYLMYQELAQKSQFDEFRFRALTSMVNTNAIRREWTLGLENLRQTIEILPTVENIQLKEHGLAVAAVFYNYLE
QHALAKEFALQLAESTSNQRSLCFALQLRLQADTGLGTIGIGDELFQIALQHCETIGELVVASAIVSYKAELLLKDSQAS
EASQLLDQYLERVNNTGYPPIIASFYTLLAEANLLQNKKAVAAEYATTALKYTSSATNAEAAMRANKVLFDYHSSRGNSE
AALEAYIKYAEADKAYLDEVKTKTLAFQLAEHQSLEQQNKISLLDEQNKLLKVQQQLDQAQAYNSRLLIAVLFCITLGLG
TWGWHSWQSQRRLKQLAEFDSLTGLFSRGHFTQVSLSAVEYAKTLNAPISCILLDVDKFKQINDRLGHATGDWALKEVAR
ICKEQVREYEIFGRIGGEEFCLLLPECELKHATDLANAMCQALRGADTSASGHKFELTASFGVTDNARAGYSLDKLMAQA
DKAMYSAKKQGRNQVQCYSANPSVATTPQEAG

Sequences:

>Translated_592_residues
MKLRKPLMRNFLVVFALLSVIATAVNAADGTLALLREADSLRSSSPIEFQDKLKEIEKQAGALNNYESEYLAYLRAYNLS
FSGQLNDAYLMYQELAQKSQFDEFRFRALTSMVNTNAIRREWTLGLENLRQTIEILPTVENIQLKEHGLAVAAVFYNYLE
QHALAKEFALQLAESTSNQRSLCFALQLRLQADTGLGTIGIGDELFQIALQHCETIGELVVASAIVSYKAELLLKDSQAS
EASQLLDQYLERVNNTGYPPIIASFYTLLAEANLLQNKKAVAAEYATTALKYTSSATNAEAAMRANKVLFDYHSSRGNSE
AALEAYIKYAEADKAYLDEVKTKTLAFQLAEHQSLEQQNKISLLDEQNKLLKVQQQLDQAQAYNSRLLIAVLFCITLGLG
TWGWHSWQSQRRLKQLAEFDSLTGLFSRGHFTQVSLSAVEYAKTLNAPISCILLDVDKFKQINDRLGHATGDWALKEVAR
ICKEQVREYEIFGRIGGEEFCLLLPECELKHATDLANAMCQALRGADTSASGHKFELTASFGVTDNARAGYSLDKLMAQA
DKAMYSAKKQGRNQVQCYSANPSVATTPQEAG
>Mature_592_residues
MKLRKPLMRNFLVVFALLSVIATAVNAADGTLALLREADSLRSSSPIEFQDKLKEIEKQAGALNNYESEYLAYLRAYNLS
FSGQLNDAYLMYQELAQKSQFDEFRFRALTSMVNTNAIRREWTLGLENLRQTIEILPTVENIQLKEHGLAVAAVFYNYLE
QHALAKEFALQLAESTSNQRSLCFALQLRLQADTGLGTIGIGDELFQIALQHCETIGELVVASAIVSYKAELLLKDSQAS
EASQLLDQYLERVNNTGYPPIIASFYTLLAEANLLQNKKAVAAEYATTALKYTSSATNAEAAMRANKVLFDYHSSRGNSE
AALEAYIKYAEADKAYLDEVKTKTLAFQLAEHQSLEQQNKISLLDEQNKLLKVQQQLDQAQAYNSRLLIAVLFCITLGLG
TWGWHSWQSQRRLKQLAEFDSLTGLFSRGHFTQVSLSAVEYAKTLNAPISCILLDVDKFKQINDRLGHATGDWALKEVAR
ICKEQVREYEIFGRIGGEEFCLLLPECELKHATDLANAMCQALRGADTSASGHKFELTASFGVTDNARAGYSLDKLMAQA
DKAMYSAKKQGRNQVQCYSANPSVATTPQEAG

Specific function: Involves in the regulation of cellulose production [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 GGDEF domain [H]

Homologues:

Organism=Escherichia coli, GI87082007, Length=168, Percent_Identity=35.1190476190476, Blast_Score=105, Evalue=7e-24,
Organism=Escherichia coli, GI1788381, Length=187, Percent_Identity=30.4812834224599, Blast_Score=97, Evalue=2e-21,
Organism=Escherichia coli, GI87081881, Length=203, Percent_Identity=32.0197044334975, Blast_Score=96, Evalue=8e-21,
Organism=Escherichia coli, GI1787262, Length=175, Percent_Identity=30.8571428571429, Blast_Score=94, Evalue=3e-20,
Organism=Escherichia coli, GI145693134, Length=164, Percent_Identity=32.3170731707317, Blast_Score=92, Evalue=1e-19,
Organism=Escherichia coli, GI1787802, Length=211, Percent_Identity=30.3317535545024, Blast_Score=84, Evalue=3e-17,
Organism=Escherichia coli, GI1787816, Length=159, Percent_Identity=33.9622641509434, Blast_Score=83, Evalue=6e-17,
Organism=Escherichia coli, GI1786584, Length=184, Percent_Identity=28.2608695652174, Blast_Score=83, Evalue=6e-17,
Organism=Escherichia coli, GI87081977, Length=165, Percent_Identity=30.9090909090909, Blast_Score=74, Evalue=3e-14,
Organism=Escherichia coli, GI1787541, Length=173, Percent_Identity=28.3236994219653, Blast_Score=73, Evalue=4e-14,
Organism=Escherichia coli, GI1788085, Length=168, Percent_Identity=30.3571428571429, Blast_Score=72, Evalue=1e-13,
Organism=Escherichia coli, GI87081921, Length=173, Percent_Identity=28.3236994219653, Blast_Score=65, Evalue=9e-12,
Organism=Escherichia coli, GI87081974, Length=88, Percent_Identity=35.2272727272727, Blast_Score=65, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160 [H]

Pfam domain/function: PF00990 GGDEF [H]

EC number: NA

Molecular weight: Translated: 65905; Mature: 65905

Theoretical pI: Translated: 5.88; Mature: 5.88

Prosite motif: PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKLRKPLMRNFLVVFALLSVIATAVNAADGTLALLREADSLRSSSPIEFQDKLKEIEKQA
CCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHH
GALNNYESEYLAYLRAYNLSFSGQLNDAYLMYQELAQKSQFDEFRFRALTSMVNTNAIRR
CCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH
EWTLGLENLRQTIEILPTVENIQLKEHGLAVAAVFYNYLEQHALAKEFALQLAESTSNQR
HHHHHHHHHHHHHHHHCCHHCCEEHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCH
SLCFALQLRLQADTGLGTIGIGDELFQIALQHCETIGELVVASAIVSYKAELLLKDSQAS
HEEEEHEEEEECCCCCCEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHH
EASQLLDQYLERVNNTGYPPIIASFYTLLAEANLLQNKKAVAAEYATTALKYTSSATNAE
HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHCCCCCCHH
AAMRANKVLFDYHSSRGNSEAALEAYIKYAEADKAYLDEVKTKTLAFQLAEHQSLEQQNK
HHHHHHHHEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
ISLLDEQNKLLKVQQQLDQAQAYNSRLLIAVLFCITLGLGTWGWHSWQSQRRLKQLAEFD
HHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHH
SLTGLFSRGHFTQVSLSAVEYAKTLNAPISCILLDVDKFKQINDRLGHATGDWALKEVAR
HHHHHHHCCCCHHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHHHCCCCCHHHHHHHHH
ICKEQVREYEIFGRIGGEEFCLLLPECELKHATDLANAMCQALRGADTSASGHKFELTAS
HHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEE
FGVTDNARAGYSLDKLMAQADKAMYSAKKQGRNQVQCYSANPSVATTPQEAG
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCC
>Mature Secondary Structure
MKLRKPLMRNFLVVFALLSVIATAVNAADGTLALLREADSLRSSSPIEFQDKLKEIEKQA
CCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHH
GALNNYESEYLAYLRAYNLSFSGQLNDAYLMYQELAQKSQFDEFRFRALTSMVNTNAIRR
CCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH
EWTLGLENLRQTIEILPTVENIQLKEHGLAVAAVFYNYLEQHALAKEFALQLAESTSNQR
HHHHHHHHHHHHHHHHCCHHCCEEHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCH
SLCFALQLRLQADTGLGTIGIGDELFQIALQHCETIGELVVASAIVSYKAELLLKDSQAS
HEEEEHEEEEECCCCCCEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHH
EASQLLDQYLERVNNTGYPPIIASFYTLLAEANLLQNKKAVAAEYATTALKYTSSATNAE
HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHCCCCCCHH
AAMRANKVLFDYHSSRGNSEAALEAYIKYAEADKAYLDEVKTKTLAFQLAEHQSLEQQNK
HHHHHHHHEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
ISLLDEQNKLLKVQQQLDQAQAYNSRLLIAVLFCITLGLGTWGWHSWQSQRRLKQLAEFD
HHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHH
SLTGLFSRGHFTQVSLSAVEYAKTLNAPISCILLDVDKFKQINDRLGHATGDWALKEVAR
HHHHHHHCCCCHHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHHHCCCCCHHHHHHHHH
ICKEQVREYEIFGRIGGEEFCLLLPECELKHATDLANAMCQALRGADTSASGHKFELTAS
HHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEE
FGVTDNARAGYSLDKLMAQADKAMYSAKKQGRNQVQCYSANPSVATTPQEAG
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]