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The map label for this gene is ycaC [C]

Identifier: 119773787

GI number: 119773787

Start: 805358

End: 805897

Strand: Reverse

Name: ycaC [C]

Synonym: Sama_0649

Alternate gene names: 119773787

Gene position: 805897-805358 (Counterclockwise)

Preceding gene: 119773793

Following gene: 119773785

Centisome position: 18.72

GC content: 51.3

Gene sequence:

>540_bases
ATGCTTAAGCCAAGTGAAACTGTGCTTGTCGTCGTGGATGTTCAGGGCAAACTGGCCCGACTGATGTACAACTCAGAAGC
CATGCACCAGCAGCTGATCACCCTGATAAGCGGGGCAAGAATTTTTGATATACCCATTCTCTGGTTGGAGCAATTACCAG
ACAAACTGGGACCCACTTCTGAAGAACTCAGACTGGTGCTGGAAGGCTTCAGCCCAATTCCCAAAGAACATTTCAGTGGC
TGGGCCTGCGATGAATTTCAGCAAGCGCTTAACAATACCGGACGCAAGCAGGTGCTGCTGTGCGGCATAGAAACCCACAT
TTGTGTGTATCAAAGTTGCCGCGACATGCTGGACAACGGCTTTGATGTGCATCTGGTGGCCGACGCCATGGGGTCGCGCA
CCGCCGAGAACAAAGCATTGGGACTACAAATGATGGGTGAGGCTGGCGCCAAACTCACCAACGTCGAGTCGTTGCTGTTT
GAACTGCAACATCATGCGGTAGGCGACAGTTTCAGAGCACTGCTGAAACTCATCAAATAA

Upstream 100 bases:

>100_bases
CACTTATGCAGACGGCGCACCAAGGTGGTGCATTTGACTTTCGGCGTATTGGCAGCGGCATTAAAAAGGGGTTAACTGGG
TAAAACCAAGGAGGCGATAC

Downstream 100 bases:

>100_bases
GCCGCTCTATTACTCACGTCTGCCAAAGAAAAGCCCCCGCATTGCGGGGGCTTTGTGTATGCAGGCTTGGGGTTTGCTGC
TTACTTGTAAGTGGCTTCGC

Product: isochorismatase family protein

Products: NA

Alternate protein names: Isochorismatase Family Protein; Isochorismatase Superfamily Hydrolase; Hydrolase; Isochorismatase Hydrolase Family Protein; Nicotinamidase-Like Amidase; Isochorismatase Family Hydrolase; Amidase; Isochorismatase Domain-Containing; Amidohydrolase; Hydrolase Isochorismatase Family; YcaC-Related Amidohydrolase; Hydrolase Isochorismatase; Isochorismatase Domain-Containing A; Isochorismatase Hydrolase Family; Amidase Related Nicotinamidase; YcaC Like Amidohydrolase; With Cysteine Hydrolase Domain; Isochorismatase Family; Nicotinamidase-Related Amidase; Isochorismatase; Nicotinamidase

Number of amino acids: Translated: 179; Mature: 179

Protein sequence:

>179_residues
MLKPSETVLVVVDVQGKLARLMYNSEAMHQQLITLISGARIFDIPILWLEQLPDKLGPTSEELRLVLEGFSPIPKEHFSG
WACDEFQQALNNTGRKQVLLCGIETHICVYQSCRDMLDNGFDVHLVADAMGSRTAENKALGLQMMGEAGAKLTNVESLLF
ELQHHAVGDSFRALLKLIK

Sequences:

>Translated_179_residues
MLKPSETVLVVVDVQGKLARLMYNSEAMHQQLITLISGARIFDIPILWLEQLPDKLGPTSEELRLVLEGFSPIPKEHFSG
WACDEFQQALNNTGRKQVLLCGIETHICVYQSCRDMLDNGFDVHLVADAMGSRTAENKALGLQMMGEAGAKLTNVESLLF
ELQHHAVGDSFRALLKLIK
>Mature_179_residues
MLKPSETVLVVVDVQGKLARLMYNSEAMHQQLITLISGARIFDIPILWLEQLPDKLGPTSEELRLVLEGFSPIPKEHFSG
WACDEFQQALNNTGRKQVLLCGIETHICVYQSCRDMLDNGFDVHLVADAMGSRTAENKALGLQMMGEAGAKLTNVESLLF
ELQHHAVGDSFRALLKLIK

Specific function: Unknown

COG id: COG1335

COG function: function code Q; Amidases related to nicotinamidase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Homo sapiens, GI209969695, Length=181, Percent_Identity=34.8066298342541, Blast_Score=100, Evalue=1e-21,
Organism=Homo sapiens, GI13376007, Length=197, Percent_Identity=31.9796954314721, Blast_Score=90, Evalue=1e-18,
Organism=Homo sapiens, GI103471987, Length=179, Percent_Identity=31.8435754189944, Blast_Score=88, Evalue=3e-18,
Organism=Caenorhabditis elegans, GI17540156, Length=178, Percent_Identity=32.5842696629214, Blast_Score=88, Evalue=2e-18,
Organism=Drosophila melanogaster, GI21357489, Length=181, Percent_Identity=30.3867403314917, Blast_Score=89, Evalue=2e-18,
Organism=Drosophila melanogaster, GI19922924, Length=187, Percent_Identity=27.807486631016, Blast_Score=83, Evalue=1e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 19918; Mature: 19918

Theoretical pI: Translated: 5.57; Mature: 5.57

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.2 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
6.1 %Cys+Met (Translated Protein)
2.2 %Cys     (Mature Protein)
3.9 %Met     (Mature Protein)
6.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLKPSETVLVVVDVQGKLARLMYNSEAMHQQLITLISGARIFDIPILWLEQLPDKLGPTS
CCCCCCEEEEEEECCCHHHHHHHCHHHHHHHHHHHHCCCHHHHHHHHHHHHCCHHHCCCH
EELRLVLEGFSPIPKEHFSGWACDEFQQALNNTGRKQVLLCGIETHICVYQSCRDMLDNG
HHHHHHHHCCCCCCHHHCCCCCHHHHHHHHCCCCCCEEEEECCHHHHHHHHHHHHHHHCC
FDVHLVADAMGSRTAENKALGLQMMGEAGAKLTNVESLLFELQHHAVGDSFRALLKLIK
CEEEEEEHHHCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHC
>Mature Secondary Structure
MLKPSETVLVVVDVQGKLARLMYNSEAMHQQLITLISGARIFDIPILWLEQLPDKLGPTS
CCCCCCEEEEEEECCCHHHHHHHCHHHHHHHHHHHHCCCHHHHHHHHHHHHCCHHHCCCH
EELRLVLEGFSPIPKEHFSGWACDEFQQALNNTGRKQVLLCGIETHICVYQSCRDMLDNG
HHHHHHHHCCCCCCHHHCCCCCHHHHHHHHCCCCCCEEEEECCHHHHHHHHHHHHHHHCC
FDVHLVADAMGSRTAENKALGLQMMGEAGAKLTNVESLLFELQHHAVGDSFRALLKLIK
CEEEEEEHHHCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA