| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
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The map label for this gene is yfbL [C]
Identifier: 119773653
GI number: 119773653
Start: 630575
End: 631600
Strand: Reverse
Name: yfbL [C]
Synonym: Sama_0513
Alternate gene names: 119773653
Gene position: 631600-630575 (Counterclockwise)
Preceding gene: 119773654
Following gene: 119773652
Centisome position: 14.67
GC content: 59.16
Gene sequence:
>1026_bases ATGGGACAGGGACGTCTTGGCTATCGGATTTGGGGAGCAGCCCTGTTGGCATGCTGGCTGACAGGTTGCGCGTCTGCTCC CCAGTGCAGGCGAGACCTGACGGCCGAATGGGTTTCTCTGCCTGAAGTAAAACAAGATGTCGTCCACCTGGCCTCGGCGC CCCTGGCAGGTCGCAAGACCGGCACCGAAGGGGCCTTGCTTGCCCGCCGGTATCTGGCAGTGCGTTTTGGCGAGTCGGGC CTGCAGCCGGTGGCGGCAGACTTTTCGCCCATGACGCAGGAAAGGGTGCAGCAAACGGCAGAAGACAGCCATCCCTTCTT TCATCCCTTCAGCATTGACAAGCTCTTCGGCCAACGTCAGGGAACCAACGTGATAGGTCTGCTGCCGGCAGCGAAGGCTA ATTCGCGCTGGCGAGTCGTACTGGCCCACTACGATCATCTGGGCACAAGCGGCTCCAGATATTTTGCCGGTGCCGATGAC AATGCCTCTGGCGTCGCCGCGCTGTTGGCGCTGGCAAAACAAGCGGCAAAGGATCCACTTCGCCCGGCGGATCTCAACCT GCTCTTTGTGGCAACCGATGCCGAAGAGCCGGGACTGTACGGCAGTCAGGCGCTGGCAACCCGACTTGGTGAGCTTGGCA TAGTGCCAGAACTGGCACTGAATCTCGATATGGTCGGCCATCCCGGCAGTCCCTATGCCATCTACATGGAAGGCAGCCGC AAATTTGCCAATGCCGATGAGCTCAAAGCACTGGTGGAGCGTAACGGCCTCTGTGCCCGCCTCAGTCATTCCCGGCTGGA ACGGGATGGCAGCGCCATGAAGGTGAACTATCTCAAAGCCTCTGATCATTACCCTTTCCATAAAAGCGGCGTGCCCTGGC TGTATTTTGGTGTGCCTCCCCACCCTCAGTACCACACGGTGGACGATACCCCGGATAAACTGGACTTCAACTTCCTGGCT GCGACCATAGAGGCGGTATACCCTTTACTCTGGACAACGCTGGAACCCAAGCTGCCTCAGGGGTAA
Upstream 100 bases:
>100_bases CCATTTTGGTGGCTGGCACACCAGAAGACGTAGCCGAGCATCCCACCTCTCACACAGCGCGCTTCTTAAAGCCGCTGCTG CAACGCTAGAGGCATTCACC
Downstream 100 bases:
>100_bases AAGTTAATCTTTTGTTATTTTGCCCATTTGACGCAAAAAAAGGGCCAAAATCGTCAAAATGGATATTTTCTTGGCCAAAA TCAGCAAAGGCTGCTATACT
Product: peptidase M28
Products: NA
Alternate protein names: Aminopeptidase; Peptidase; M28 Family Peptidase; M28 Family Aminopeptidase; WD40-Like Beta Propeller; Peptidase Family M; M20/M25/M40 Family Peptidase; PDZ Domain-Containing Protein
Number of amino acids: Translated: 341; Mature: 340
Protein sequence:
>341_residues MGQGRLGYRIWGAALLACWLTGCASAPQCRRDLTAEWVSLPEVKQDVVHLASAPLAGRKTGTEGALLARRYLAVRFGESG LQPVAADFSPMTQERVQQTAEDSHPFFHPFSIDKLFGQRQGTNVIGLLPAAKANSRWRVVLAHYDHLGTSGSRYFAGADD NASGVAALLALAKQAAKDPLRPADLNLLFVATDAEEPGLYGSQALATRLGELGIVPELALNLDMVGHPGSPYAIYMEGSR KFANADELKALVERNGLCARLSHSRLERDGSAMKVNYLKASDHYPFHKSGVPWLYFGVPPHPQYHTVDDTPDKLDFNFLA ATIEAVYPLLWTTLEPKLPQG
Sequences:
>Translated_341_residues MGQGRLGYRIWGAALLACWLTGCASAPQCRRDLTAEWVSLPEVKQDVVHLASAPLAGRKTGTEGALLARRYLAVRFGESG LQPVAADFSPMTQERVQQTAEDSHPFFHPFSIDKLFGQRQGTNVIGLLPAAKANSRWRVVLAHYDHLGTSGSRYFAGADD NASGVAALLALAKQAAKDPLRPADLNLLFVATDAEEPGLYGSQALATRLGELGIVPELALNLDMVGHPGSPYAIYMEGSR KFANADELKALVERNGLCARLSHSRLERDGSAMKVNYLKASDHYPFHKSGVPWLYFGVPPHPQYHTVDDTPDKLDFNFLA ATIEAVYPLLWTTLEPKLPQG >Mature_340_residues GQGRLGYRIWGAALLACWLTGCASAPQCRRDLTAEWVSLPEVKQDVVHLASAPLAGRKTGTEGALLARRYLAVRFGESGL QPVAADFSPMTQERVQQTAEDSHPFFHPFSIDKLFGQRQGTNVIGLLPAAKANSRWRVVLAHYDHLGTSGSRYFAGADDN ASGVAALLALAKQAAKDPLRPADLNLLFVATDAEEPGLYGSQALATRLGELGIVPELALNLDMVGHPGSPYAIYMEGSRK FANADELKALVERNGLCARLSHSRLERDGSAMKVNYLKASDHYPFHKSGVPWLYFGVPPHPQYHTVDDTPDKLDFNFLAA TIEAVYPLLWTTLEPKLPQG
Specific function: Unknown
COG id: COG2234
COG function: function code R; Predicted aminopeptidases
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Homo sapiens, GI6912618, Length=312, Percent_Identity=26.9230769230769, Blast_Score=67, Evalue=3e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 37147; Mature: 37015
Theoretical pI: Translated: 7.11; Mature: 7.11
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGQGRLGYRIWGAALLACWLTGCASAPQCRRDLTAEWVSLPEVKQDVVHLASAPLAGRKT CCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCC GTEGALLARRYLAVRFGESGLQPVAADFSPMTQERVQQTAEDSHPFFHPFSIDKLFGQRQ CCCHHHHHHHHHHHEECCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHCCCC GTNVIGLLPAAKANSRWRVVLAHYDHLGTSGSRYFAGADDNASGVAALLALAKQAAKDPL CCCEEEEECCCCCCCCEEEEEEECCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHCCCC RPADLNLLFVATDAEEPGLYGSQALATRLGELGIVPELALNLDMVGHPGSPYAIYMEGSR CCCCCEEEEEEECCCCCCCCCHHHHHHHHHHCCCCHHHHHCEEEECCCCCCEEEEECCCC KFANADELKALVERNGLCARLSHSRLERDGSAMKVNYLKASDHYPFHKSGVPWLYFGVPP CCCCHHHHHHHHHCCCCEEHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCCCEEEECCCC HPQYHTVDDTPDKLDFNFLAATIEAVYPLLWTTLEPKLPQG CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCC >Mature Secondary Structure GQGRLGYRIWGAALLACWLTGCASAPQCRRDLTAEWVSLPEVKQDVVHLASAPLAGRKT CCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCC GTEGALLARRYLAVRFGESGLQPVAADFSPMTQERVQQTAEDSHPFFHPFSIDKLFGQRQ CCCHHHHHHHHHHHEECCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHCCCC GTNVIGLLPAAKANSRWRVVLAHYDHLGTSGSRYFAGADDNASGVAALLALAKQAAKDPL CCCEEEEECCCCCCCCEEEEEEECCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHCCCC RPADLNLLFVATDAEEPGLYGSQALATRLGELGIVPELALNLDMVGHPGSPYAIYMEGSR CCCCCEEEEEEECCCCCCCCCHHHHHHHHHHCCCCHHHHHCEEEECCCCCCEEEEECCCC KFANADELKALVERNGLCARLSHSRLERDGSAMKVNYLKASDHYPFHKSGVPWLYFGVPP CCCCHHHHHHHHHCCCCEEHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCCCEEEECCCC HPQYHTVDDTPDKLDFNFLAATIEAVYPLLWTTLEPKLPQG CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA