| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
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The map label for this gene is uvrA [H]
Identifier: 119773654
GI number: 119773654
Start: 631612
End: 634440
Strand: Reverse
Name: uvrA [H]
Synonym: Sama_0514
Alternate gene names: 119773654
Gene position: 634440-631612 (Counterclockwise)
Preceding gene: 119773657
Following gene: 119773653
Centisome position: 14.73
GC content: 57.94
Gene sequence:
>2829_bases ATGGACAAGATTGAAATCCGCGGGGCCCGCACCCACAACCTCAAGAATATCAACCTGACAATTCCCAGAGACAAGCTGAT TGTGATCACAGGTCTCTCGGGGTCAGGCAAGTCGTCGCTGGCGTTTGATACCCTCTACGCCGAAGGTCAGCGCCGCTATG TGGAGTCCCTCTCTGCCTACGCCCGCCAGTTTTTGAGCCTGATGGAAAAGCCCGATGTGGACCATATCGAGGGTCTGAGC CCGGCCATTTCCATCGAGCAGAAATCCACCTCCCATAACCCTCGCTCCACCGTGGGTACCATTACCGAGGTGTACGATTA TTTACGTCTGCTGTTTGCCCGCGTTGGCGAACCACGCTGCCCGACCCACGGCCAGCCACTGGCGGCCCAGACCGTGAGCC AGATGGTCGACAAGGTGCTGGAACGCCCCGAGGGCGAAAAACTGATGCTGCTGGCGCCTGTGGTCAAGGCCCGCAAGGGT GAACACGTTAAGCTGCTCGACAGCCTGTCGGCCCAGGGCTATATCCGCGCCCGTATCGATGGTGAGGTATGCGATCTATC CGATCCGCCAACCCTGGATCTGCACGTGAAGCACACAATCGAAGTGGTGGTGGACCGCTTCAAGGTCAAAGACGACATGC AGCAGCGTCTGGCAGAATCCTTTGAGACCACCCTTGAGCTGTCCGGCGGCATCGCCGTGGTGGCCAGCATGGAAGAAGGC GCTGCCGAAGAGATGATTTTCTCGGCCAACTTTGCCTGCCCCCATTGCGGTTATTCCATGGCCGAACTGGAGCCACGGAT TTTTTCCTTCAACAATCCCGCCGGCGCCTGCCAGACCTGTGATGGCCTGGGCGTACAGCAATTTTTTGACCCTGAGCGGG TCATAGTCTCCGGTGAGCTGTCGCTGGCGGGCGGCGCCGTTCGCGGCTGGGACAGACGTAACTTCTATTATTTCCAGATG CTCAAGTCCCTCGCCGAACATTATGAGTTCGATGTGGAGGCCCCCTTCAGTGAGCTGACCGCCAAGGTGCAAAAGATAGT GCTTTACGGCTCTGGCAAAGAAGAGGTGGCCTTCCGCTATGTGAACGATCGCGGCGATGTGGTGGTGCGCAAACACCCCT TCGAAGGTATTCTCAACAACATGGACAGACGCTACCGCGAGACCGAATCCAATACGGTGCGCGAAGAGCTGGCCAAGTAC ATCAGCAATCAGGCCTGCAGCAGCTGTGGCGGCTCGCGCCTGCGGGAAGAAGCCCGCCATGTGTTTATTGAAGATCTCAA CCTGCCGACCCTGACCCACTGGTCCATCGGCGAGGCCATGGATTACTTCAACAAGCTGGAATTTGAAGGGCAAAAGGCCC AGATCGCCGAGAAAATCCTCAAAGAAGTGCGCGATCGTCTGGGCTTCCTGGTTAACGTGGGACTCAACTACCTGAGTCTG GCACGTTCGGCCGAAACCCTCTCCGGCGGCGAAGCCCAGCGTATTCGTCTGGCAAGCCAGATTGGCGCCGGTCTGGTTGG CGTGATGTACGTGCTGGATGAGCCCTCCATCGGCCTGCATCAGCGGGACAACGAGCGGCTGCTGAACACCCTGACTCACC TTCGGGATCTCGGCAATACCGTGATTGTGGTGGAGCACGACGAAGACGCCATCCGCATGGCCGACCATATTATCGATATA GGCCCGGGCGCCGGTGTTCATGGCGGCGAAGTGATTTGCGACGGCGATTTGGCCGCCATCACCGCCTGCGAGCACTCAGT CACCGGCCAGTACATTTCCGGCAAGCGCAAAATCCAGGTGGACGGCGGTCGTACCCCCATCAACCCGGAACAGCTGATTG AGCTCAGGGGCGCCCGTGGTAATAACCTCAAGAATGTCGACCTCAGCATTCCGGTTGGCCTATTTACCTGCGTGACCGGG GTGTCAGGTTCGGGTAAATCCACCCTGATCAACGACACCTTTTTCAAGATTGCCCACAAGGCGCTCAATGGTGCCACAGT GGATGAGCCCGCACCTTACACCAGCATCACAGGGCTTGAGCAGTGCGACAAGGTGGTGGATATCGATCAGAGCCCCATCG GCCGCACCCCACGGTCCAACCCTGCTACTTACACGGGCATTTTCACCCCCATCCGGGAACTCTTTGCCGGTACCCAGGAG TCCCGCACCCGGGGTTATCAGGTGGGCCGTTTCTCCTTTAACGTCAAGGGCGGTCGCTGCGAGGCCTGTCAGGGTGATGG GCTTATCAAGGTAGAGATGCACTTTTTACCGGATGTGTATGTGCCCTGCGACTCCTGTAAGGGCAAACGTTACAACCGCG AAACCCTGGAAGTGAAATACAAGGGCAAGAACATCCACGAAGTGCTGCAGATGACCGTGGAAGACGCCCGGACGTTTTTC GATGCCGTGCCCGCCATCGCCCGCAAGCTGCAAACTCTGATGGATGTTGGCCTGTCATACATTCGTCTCGGCCAAAGCGC CACCACCCTGTCGGGCGGAGAGGCTCAGCGGGTAAAACTGGCCAAGGAGCTGTCGAAACGGGATACGGGCAAAACCCTGT ATATTCTCGATGAGCCGACAACGGGTCTGCACTTTGCTGATATTCAGCTGCTGCTGGACGTACTGCACCGACTCAAGTCC CATGGCAACACCATAGTGGTGATTGAACACAATCTGGATGTCATCAAGACAGCCGACTGGATTGTGGATTTGGGCCCCGA AGGCGGCTCTGGCGGGGGCACCATTTTGGTGGCTGGCACACCAGAAGACGTAGCCGAGCATCCCACCTCTCACACAGCGC GCTTCTTAAAGCCGCTGCTGCAACGCTAG
Upstream 100 bases:
>100_bases CACGCCCAAATCCTCTGACAGCAGTCTTTGGTGCGGCTGTAGTTTCAGGCGTAAATTATGCGATACTGATGGTCTTTTTT CCGGCGTTTAGAAGTGGCAG
Downstream 100 bases:
>100_bases AGGCATTCACCATGGGACAGGGACGTCTTGGCTATCGGATTTGGGGAGCAGCCCTGTTGGCATGCTGGCTGACAGGTTGC GCGTCTGCTCCCCAGTGCAG
Product: excinuclease ABC subunit A
Products: NA
Alternate protein names: UvrA protein; Excinuclease ABC subunit A [H]
Number of amino acids: Translated: 942; Mature: 942
Protein sequence:
>942_residues MDKIEIRGARTHNLKNINLTIPRDKLIVITGLSGSGKSSLAFDTLYAEGQRRYVESLSAYARQFLSLMEKPDVDHIEGLS PAISIEQKSTSHNPRSTVGTITEVYDYLRLLFARVGEPRCPTHGQPLAAQTVSQMVDKVLERPEGEKLMLLAPVVKARKG EHVKLLDSLSAQGYIRARIDGEVCDLSDPPTLDLHVKHTIEVVVDRFKVKDDMQQRLAESFETTLELSGGIAVVASMEEG AAEEMIFSANFACPHCGYSMAELEPRIFSFNNPAGACQTCDGLGVQQFFDPERVIVSGELSLAGGAVRGWDRRNFYYFQM LKSLAEHYEFDVEAPFSELTAKVQKIVLYGSGKEEVAFRYVNDRGDVVVRKHPFEGILNNMDRRYRETESNTVREELAKY ISNQACSSCGGSRLREEARHVFIEDLNLPTLTHWSIGEAMDYFNKLEFEGQKAQIAEKILKEVRDRLGFLVNVGLNYLSL ARSAETLSGGEAQRIRLASQIGAGLVGVMYVLDEPSIGLHQRDNERLLNTLTHLRDLGNTVIVVEHDEDAIRMADHIIDI GPGAGVHGGEVICDGDLAAITACEHSVTGQYISGKRKIQVDGGRTPINPEQLIELRGARGNNLKNVDLSIPVGLFTCVTG VSGSGKSTLINDTFFKIAHKALNGATVDEPAPYTSITGLEQCDKVVDIDQSPIGRTPRSNPATYTGIFTPIRELFAGTQE SRTRGYQVGRFSFNVKGGRCEACQGDGLIKVEMHFLPDVYVPCDSCKGKRYNRETLEVKYKGKNIHEVLQMTVEDARTFF DAVPAIARKLQTLMDVGLSYIRLGQSATTLSGGEAQRVKLAKELSKRDTGKTLYILDEPTTGLHFADIQLLLDVLHRLKS HGNTIVVIEHNLDVIKTADWIVDLGPEGGSGGGTILVAGTPEDVAEHPTSHTARFLKPLLQR
Sequences:
>Translated_942_residues MDKIEIRGARTHNLKNINLTIPRDKLIVITGLSGSGKSSLAFDTLYAEGQRRYVESLSAYARQFLSLMEKPDVDHIEGLS PAISIEQKSTSHNPRSTVGTITEVYDYLRLLFARVGEPRCPTHGQPLAAQTVSQMVDKVLERPEGEKLMLLAPVVKARKG EHVKLLDSLSAQGYIRARIDGEVCDLSDPPTLDLHVKHTIEVVVDRFKVKDDMQQRLAESFETTLELSGGIAVVASMEEG AAEEMIFSANFACPHCGYSMAELEPRIFSFNNPAGACQTCDGLGVQQFFDPERVIVSGELSLAGGAVRGWDRRNFYYFQM LKSLAEHYEFDVEAPFSELTAKVQKIVLYGSGKEEVAFRYVNDRGDVVVRKHPFEGILNNMDRRYRETESNTVREELAKY ISNQACSSCGGSRLREEARHVFIEDLNLPTLTHWSIGEAMDYFNKLEFEGQKAQIAEKILKEVRDRLGFLVNVGLNYLSL ARSAETLSGGEAQRIRLASQIGAGLVGVMYVLDEPSIGLHQRDNERLLNTLTHLRDLGNTVIVVEHDEDAIRMADHIIDI GPGAGVHGGEVICDGDLAAITACEHSVTGQYISGKRKIQVDGGRTPINPEQLIELRGARGNNLKNVDLSIPVGLFTCVTG VSGSGKSTLINDTFFKIAHKALNGATVDEPAPYTSITGLEQCDKVVDIDQSPIGRTPRSNPATYTGIFTPIRELFAGTQE SRTRGYQVGRFSFNVKGGRCEACQGDGLIKVEMHFLPDVYVPCDSCKGKRYNRETLEVKYKGKNIHEVLQMTVEDARTFF DAVPAIARKLQTLMDVGLSYIRLGQSATTLSGGEAQRVKLAKELSKRDTGKTLYILDEPTTGLHFADIQLLLDVLHRLKS HGNTIVVIEHNLDVIKTADWIVDLGPEGGSGGGTILVAGTPEDVAEHPTSHTARFLKPLLQR >Mature_942_residues MDKIEIRGARTHNLKNINLTIPRDKLIVITGLSGSGKSSLAFDTLYAEGQRRYVESLSAYARQFLSLMEKPDVDHIEGLS PAISIEQKSTSHNPRSTVGTITEVYDYLRLLFARVGEPRCPTHGQPLAAQTVSQMVDKVLERPEGEKLMLLAPVVKARKG EHVKLLDSLSAQGYIRARIDGEVCDLSDPPTLDLHVKHTIEVVVDRFKVKDDMQQRLAESFETTLELSGGIAVVASMEEG AAEEMIFSANFACPHCGYSMAELEPRIFSFNNPAGACQTCDGLGVQQFFDPERVIVSGELSLAGGAVRGWDRRNFYYFQM LKSLAEHYEFDVEAPFSELTAKVQKIVLYGSGKEEVAFRYVNDRGDVVVRKHPFEGILNNMDRRYRETESNTVREELAKY ISNQACSSCGGSRLREEARHVFIEDLNLPTLTHWSIGEAMDYFNKLEFEGQKAQIAEKILKEVRDRLGFLVNVGLNYLSL ARSAETLSGGEAQRIRLASQIGAGLVGVMYVLDEPSIGLHQRDNERLLNTLTHLRDLGNTVIVVEHDEDAIRMADHIIDI GPGAGVHGGEVICDGDLAAITACEHSVTGQYISGKRKIQVDGGRTPINPEQLIELRGARGNNLKNVDLSIPVGLFTCVTG VSGSGKSTLINDTFFKIAHKALNGATVDEPAPYTSITGLEQCDKVVDIDQSPIGRTPRSNPATYTGIFTPIRELFAGTQE SRTRGYQVGRFSFNVKGGRCEACQGDGLIKVEMHFLPDVYVPCDSCKGKRYNRETLEVKYKGKNIHEVLQMTVEDARTFF DAVPAIARKLQTLMDVGLSYIRLGQSATTLSGGEAQRVKLAKELSKRDTGKTLYILDEPTTGLHFADIQLLLDVLHRLKS HGNTIVVIEHNLDVIKTADWIVDLGPEGGSGGGTILVAGTPEDVAEHPTSHTARFLKPLLQR
Specific function: The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion h
COG id: COG0178
COG function: function code L; Excinuclease ATPase subunit
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 2 ABC transporter domains [H]
Homologues:
Organism=Escherichia coli, GI2367343, Length=940, Percent_Identity=80.7446808510638, Blast_Score=1584, Evalue=0.0,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003439 - InterPro: IPR017871 - InterPro: IPR013815 - InterPro: IPR004602 [H]
Pfam domain/function: PF00005 ABC_tran [H]
EC number: NA
Molecular weight: Translated: 103871; Mature: 103871
Theoretical pI: Translated: 6.18; Mature: 6.18
Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.7 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 3.4 %Cys+Met (Translated Protein) 1.7 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 3.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDKIEIRGARTHNLKNINLTIPRDKLIVITGLSGSGKSSLAFDTLYAEGQRRYVESLSAY CCCEEECCCCCCCCEEEEEEECCCCEEEEECCCCCCCCCEEHHHHHHHHHHHHHHHHHHH ARQFLSLMEKPDVDHIEGLSPAISIEQKSTSHNPRSTVGTITEVYDYLRLLFARVGEPRC HHHHHHHHCCCCCCHHCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCC PTHGQPLAAQTVSQMVDKVLERPEGEKLMLLAPVVKARKGEHVKLLDSLSAQGYIRARID CCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECHHHHCCCCCEEHHHHCCCCCEEEEEEC GEVCDLSDPPTLDLHVKHTIEVVVDRFKVKDDMQQRLAESFETTLELSGGIAVVASMEEG CCEECCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCEEEEEECCCC AAEEMIFSANFACPHCGYSMAELEPRIFSFNNPAGACQTCDGLGVQQFFDPERVIVSGEL CHHHEEEECCCCCCCCCCHHHHCCCCEEECCCCCCCCCCCCCCCHHHHCCCCEEEEECCE SLAGGAVRGWDRRNFYYFQMLKSLAEHYEFDVEAPFSELTAKVQKIVLYGSGKEEVAFRY EECCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHEEEEECCCCCEEEEEE VNDRGDVVVRKHPFEGILNNMDRRYRETESNTVREELAKYISNQACSSCGGSRLREEARH ECCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH VFIEDLNLPTLTHWSIGEAMDYFNKLEFEGQKAQIAEKILKEVRDRLGFLVNVGLNYLSL EEEECCCCCEEECCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCHHHHCHHHHHH ARSAETLSGGEAQRIRLASQIGAGLVGVMYVLDEPSIGLHQRDNERLLNTLTHLRDLGNT HHHHHHCCCCCHHHHHHHHHHCCCCEEHEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCE VIVVEHDEDAIRMADHIIDIGPGAGVHGGEVICDGDLAAITACEHSVTGQYISGKRKIQV EEEEECCCHHHHHHHHHEECCCCCCCCCCEEEECCCCEEEEEHHHCCCCCEECCCEEEEE DGGRTPINPEQLIELRGARGNNLKNVDLSIPVGLFTCVTGVSGSGKSTLINDTFFKIAHK CCCCCCCCHHHHHHHCCCCCCCCCEEEEECCHHHHHHHHCCCCCCCCCEEHHHHHHHHHH ALNGATVDEPAPYTSITGLEQCDKVVDIDQSPIGRTPRSNPATYTGIFTPIRELFAGTQE HHCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCEEHHHHHHHHHHHCCCHH SRTRGYQVGRFSFNVKGGRCEACQGDGLIKVEMHFLPDVYVPCDSCKGKRYNRETLEVKY HHHCCEEEEEEEEEECCCEECCCCCCCEEEEEEEECCCEEECCCCCCCCCCCCCEEEEEE KGKNIHEVLQMTVEDARTFFDAVPAIARKLQTLMDVGLSYIRLGQSATTLSGGEAQRVKL CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHCCCCCCCCCCCCHHHHHH AKELSKRDTGKTLYILDEPTTGLHFADIQLLLDVLHRLKSHGNTIVVIEHNLDVIKTADW HHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCEEEECCE IVDLGPEGGSGGGTILVAGTPEDVAEHPTSHTARFLKPLLQR EEEECCCCCCCCCEEEEECCCHHHHHCCCHHHHHHHHHHHCC >Mature Secondary Structure MDKIEIRGARTHNLKNINLTIPRDKLIVITGLSGSGKSSLAFDTLYAEGQRRYVESLSAY CCCEEECCCCCCCCEEEEEEECCCCEEEEECCCCCCCCCEEHHHHHHHHHHHHHHHHHHH ARQFLSLMEKPDVDHIEGLSPAISIEQKSTSHNPRSTVGTITEVYDYLRLLFARVGEPRC HHHHHHHHCCCCCCHHCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCC PTHGQPLAAQTVSQMVDKVLERPEGEKLMLLAPVVKARKGEHVKLLDSLSAQGYIRARID CCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECHHHHCCCCCEEHHHHCCCCCEEEEEEC GEVCDLSDPPTLDLHVKHTIEVVVDRFKVKDDMQQRLAESFETTLELSGGIAVVASMEEG CCEECCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCEEEEEECCCC AAEEMIFSANFACPHCGYSMAELEPRIFSFNNPAGACQTCDGLGVQQFFDPERVIVSGEL CHHHEEEECCCCCCCCCCHHHHCCCCEEECCCCCCCCCCCCCCCHHHHCCCCEEEEECCE SLAGGAVRGWDRRNFYYFQMLKSLAEHYEFDVEAPFSELTAKVQKIVLYGSGKEEVAFRY EECCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHEEEEECCCCCEEEEEE VNDRGDVVVRKHPFEGILNNMDRRYRETESNTVREELAKYISNQACSSCGGSRLREEARH ECCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH VFIEDLNLPTLTHWSIGEAMDYFNKLEFEGQKAQIAEKILKEVRDRLGFLVNVGLNYLSL EEEECCCCCEEECCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCHHHHCHHHHHH ARSAETLSGGEAQRIRLASQIGAGLVGVMYVLDEPSIGLHQRDNERLLNTLTHLRDLGNT HHHHHHCCCCCHHHHHHHHHHCCCCEEHEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCE VIVVEHDEDAIRMADHIIDIGPGAGVHGGEVICDGDLAAITACEHSVTGQYISGKRKIQV EEEEECCCHHHHHHHHHEECCCCCCCCCCEEEECCCCEEEEEHHHCCCCCEECCCEEEEE DGGRTPINPEQLIELRGARGNNLKNVDLSIPVGLFTCVTGVSGSGKSTLINDTFFKIAHK CCCCCCCCHHHHHHHCCCCCCCCCEEEEECCHHHHHHHHCCCCCCCCCEEHHHHHHHHHH ALNGATVDEPAPYTSITGLEQCDKVVDIDQSPIGRTPRSNPATYTGIFTPIRELFAGTQE HHCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCEEHHHHHHHHHHHCCCHH SRTRGYQVGRFSFNVKGGRCEACQGDGLIKVEMHFLPDVYVPCDSCKGKRYNRETLEVKY HHHCCEEEEEEEEEECCCEECCCCCCCEEEEEEEECCCEEECCCCCCCCCCCCCEEEEEE KGKNIHEVLQMTVEDARTFFDAVPAIARKLQTLMDVGLSYIRLGQSATTLSGGEAQRVKL CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHCCCCCCCCCCCCHHHHHH AKELSKRDTGKTLYILDEPTTGLHFADIQLLLDVLHRLKSHGNTIVVIEHNLDVIKTADW HHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCEEEECCE IVDLGPEGGSGGGTILVAGTPEDVAEHPTSHTARFLKPLLQR EEEECCCCCCCCCEEEEECCCHHHHHCCCHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: DNA [C]
Specific reaction: Protein + DNA = Protein-DNA [C]
General reaction: Hydrolase; Acting on ester bonds [C]
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 10952301 [H]