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The map label for this gene is ubiD

Identifier: 119773566

GI number: 119773566

Start: 522664

End: 524145

Strand: Reverse

Name: ubiD

Synonym: Sama_0426

Alternate gene names: 119773566

Gene position: 524145-522664 (Counterclockwise)

Preceding gene: 119773568

Following gene: 119773565

Centisome position: 12.17

GC content: 56.75

Gene sequence:

>1482_bases
ATGAGTTTTAAGGATTTACGTAGCTTTATCAGCCACCTCGAAGAGTGCGGTGAGCTTAAGCGCGTCAGCTATCCGGTTGA
TCCTTATCTTGAAATGACCGAAATCGCCGACCGCGTATTGCGTGCCGGTGGCCCGGCGCTGTTGTTCGAACAGCCAAAAG
GCCACAGCATGCCGGTACTGGCAAACCTCTTTGGCACACCCAAGCGTGTTGCCATGGCACTGGGCAAAGAAGACCCGCTG
GCGCTGCGCGACGTGGGCGAGCTGCTGGCATTCCTCAAAGAACCTGAGCCACCCCGCGGCTTTAAAGATGCCATTGCCAA
AATCCCCATGTTCAAGCAAGCGCTGAATATGCCGCCCAAGACGGTGAGCCGAGCCCCCTGTCAGGAAGTGGTGATGACCG
GTGATGATGTCGACCTGACCAAGCTGCCGATTCAGCATTGCTGGCCAGGCGATGTTGCGCCACTGGTGACCTGGGGACTA
ACCATCACCAAGGGCCCACGCCAGAAACGTCAGAACCTCGGCATCTACCGTCAGCAGCTTTTGGGCAAAAACAAACTCAT
CATGCGCTGGCTGTCCCACCGGGGTGGCGCGCTGGATTTCCGTGATTTTCAGGAAAAGCATCCAGGCGAGAACTACCCTG
TGGTGGTAGCGCTGGGCTCAGATCCCGTGACCATACTCGGCGCCGTGACCCCTGTGCCCGACTCAATGAGCGAATATGCC
TTTGCCGGTCTACTTCGCGGCGAGCGCACCGAAGTGGTCAAGGCCCTCTCCTGCGATCTTGAAGTACCGGCCACCAGCGA
AATCATCCTTGAGGGCTATATCGCCCCCGGCGAGATGGCCGAAGAAGGTCCCTACGGCGACCATACCGGCTATTACAACG
AGACCGACAGTTTCCCTGTGTTTACCGTGACTCACATCTCCCACAGGAAAGATGCCATCTACCACAGCACCTACACTGGC
CGCCCACCGGATGAGCCAGCCATGCTGGGGGTGGCGCTGAACGAAGTGTTCGTGCCGATTTTGCGTAAGCAATATCCTGA
AATCGTTGATTTCTATCTGCCACCCGAAGGTTGTTCCTATCGGATGGCGGTGATCTCCATCCGCAAGCAGTACCCCGGTC
ATGCCAAGCGGGTGATGATGGGTGCCTGGTCGTTCCTGCGCCAGTTTATGTACACCAAATTTATTGTGGTGGTGGATGAA
GATGTGAATTGCCGTGACTGGCAGGACGTCATTTGGGCCATTACCACCCGTATGGACCCCACCCGCGATACCGTGATGAT
AGATAACACCCCTATCGATTATCTCGACTTTGCCTCTCCGGTGGCGGGCCTTGGCTCCAAGATGGGTCTGGATGCCACCA
ACAAGTGGGAAGGTGAGACCAATCGCGAATGGGGCACACCCATAGTGATGGACGAGGCGGTAAAACGCCGGGTCGACGAT
ATCTGGGACGAACTCGGTATCGAACAGTCCCCTACCCTCTAG

Upstream 100 bases:

>100_bases
CATACTCCCCTCCTGCCCGGGGCGCTTTTGATTCCGCCAACGGGGCTTTAGTGGTATAGTGCGCGCCACAAAAGGGTTTT
GCAAACAGAGGCATTTCCAT

Downstream 100 bases:

>100_bases
TCTCTGAACATACCAAAACCCGGGTGCCGCACTGCGGCACCTATACTAAAGACACAGTAAAGAGAAACCCTTCACAGAAA
GGGAAAGCATACCAAGAGGT

Product: carboxylyase-like protein

Products: NA

Alternate protein names: Polyprenyl p-hydroxybenzoate decarboxylase

Number of amino acids: Translated: 493; Mature: 492

Protein sequence:

>493_residues
MSFKDLRSFISHLEECGELKRVSYPVDPYLEMTEIADRVLRAGGPALLFEQPKGHSMPVLANLFGTPKRVAMALGKEDPL
ALRDVGELLAFLKEPEPPRGFKDAIAKIPMFKQALNMPPKTVSRAPCQEVVMTGDDVDLTKLPIQHCWPGDVAPLVTWGL
TITKGPRQKRQNLGIYRQQLLGKNKLIMRWLSHRGGALDFRDFQEKHPGENYPVVVALGSDPVTILGAVTPVPDSMSEYA
FAGLLRGERTEVVKALSCDLEVPATSEIILEGYIAPGEMAEEGPYGDHTGYYNETDSFPVFTVTHISHRKDAIYHSTYTG
RPPDEPAMLGVALNEVFVPILRKQYPEIVDFYLPPEGCSYRMAVISIRKQYPGHAKRVMMGAWSFLRQFMYTKFIVVVDE
DVNCRDWQDVIWAITTRMDPTRDTVMIDNTPIDYLDFASPVAGLGSKMGLDATNKWEGETNREWGTPIVMDEAVKRRVDD
IWDELGIEQSPTL

Sequences:

>Translated_493_residues
MSFKDLRSFISHLEECGELKRVSYPVDPYLEMTEIADRVLRAGGPALLFEQPKGHSMPVLANLFGTPKRVAMALGKEDPL
ALRDVGELLAFLKEPEPPRGFKDAIAKIPMFKQALNMPPKTVSRAPCQEVVMTGDDVDLTKLPIQHCWPGDVAPLVTWGL
TITKGPRQKRQNLGIYRQQLLGKNKLIMRWLSHRGGALDFRDFQEKHPGENYPVVVALGSDPVTILGAVTPVPDSMSEYA
FAGLLRGERTEVVKALSCDLEVPATSEIILEGYIAPGEMAEEGPYGDHTGYYNETDSFPVFTVTHISHRKDAIYHSTYTG
RPPDEPAMLGVALNEVFVPILRKQYPEIVDFYLPPEGCSYRMAVISIRKQYPGHAKRVMMGAWSFLRQFMYTKFIVVVDE
DVNCRDWQDVIWAITTRMDPTRDTVMIDNTPIDYLDFASPVAGLGSKMGLDATNKWEGETNREWGTPIVMDEAVKRRVDD
IWDELGIEQSPTL
>Mature_492_residues
SFKDLRSFISHLEECGELKRVSYPVDPYLEMTEIADRVLRAGGPALLFEQPKGHSMPVLANLFGTPKRVAMALGKEDPLA
LRDVGELLAFLKEPEPPRGFKDAIAKIPMFKQALNMPPKTVSRAPCQEVVMTGDDVDLTKLPIQHCWPGDVAPLVTWGLT
ITKGPRQKRQNLGIYRQQLLGKNKLIMRWLSHRGGALDFRDFQEKHPGENYPVVVALGSDPVTILGAVTPVPDSMSEYAF
AGLLRGERTEVVKALSCDLEVPATSEIILEGYIAPGEMAEEGPYGDHTGYYNETDSFPVFTVTHISHRKDAIYHSTYTGR
PPDEPAMLGVALNEVFVPILRKQYPEIVDFYLPPEGCSYRMAVISIRKQYPGHAKRVMMGAWSFLRQFMYTKFIVVVDED
VNCRDWQDVIWAITTRMDPTRDTVMIDNTPIDYLDFASPVAGLGSKMGLDATNKWEGETNREWGTPIVMDEAVKRRVDDI
WDELGIEQSPTL

Specific function: Catalyzes the decarboxylation of 3-octaprenyl-4-hydroxy benzoate to 2-octaprenylphenol

COG id: COG0043

COG function: function code H; 3-polyprenyl-4-hydroxybenzoate decarboxylase and related decarboxylases

Gene ontology:

Cell location: Cell membrane; Peripheral membrane protein

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ubiD family

Homologues:

Organism=Escherichia coli, GI1790277, Length=487, Percent_Identity=75.3593429158111, Blast_Score=793, Evalue=0.0,
Organism=Saccharomyces cerevisiae, GI6320748, Length=449, Percent_Identity=24.9443207126949, Blast_Score=125, Evalue=1e-29,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): UBID_SHEAM (A1S2N0)

Other databases:

- EMBL:   CP000507
- RefSeq:   YP_926306.1
- ProteinModelPortal:   A1S2N0
- SMR:   A1S2N0
- STRING:   A1S2N0
- GeneID:   4602681
- GenomeReviews:   CP000507_GR
- KEGG:   saz:Sama_0426
- NMPDR:   fig|326297.7.peg.403
- eggNOG:   COG0043
- HOGENOM:   HBG564733
- OMA:   LNRIYTP
- PhylomeDB:   A1S2N0
- ProtClustDB:   CLSK905777
- HAMAP:   MF_01636
- InterPro:   IPR002830
- InterPro:   IPR009002
- TIGRFAMs:   TIGR00148

Pfam domain/function: PF01977 UbiD; SSF50475 FMN_binding

EC number: 4.1.1.-

Molecular weight: Translated: 55361; Mature: 55230

Theoretical pI: Translated: 5.17; Mature: 5.17

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSFKDLRSFISHLEECGELKRVSYPVDPYLEMTEIADRVLRAGGPALLFEQPKGHSMPVL
CCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCHH
ANLFGTPKRVAMALGKEDPLALRDVGELLAFLKEPEPPRGFKDAIAKIPMFKQALNMPPK
HHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHCHHHHHHHCCCCH
TVSRAPCQEVVMTGDDVDLTKLPIQHCWPGDVAPLVTWGLTITKGPRQKRQNLGIYRQQL
HHCCCCHHHHHCCCCCCCHHCCCHHHCCCCCCHHHHHHCEEECCCHHHHHHHHHHHHHHH
LGKNKLIMRWLSHRGGALDFRDFQEKHPGENYPVVVALGSDPVTILGAVTPVPDSMSEYA
HCCHHHHHHHHHCCCCCCCHHHHHHHCCCCCCCEEEEECCCCEEEEEECCCCCCCHHHHH
FAGLLRGERTEVVKALSCDLEVPATSEIILEGYIAPGEMAEEGPYGDHTGYYNETDSFPV
HHHHHCCCHHHHHHHHHCCCCCCCCCEEEEEECCCCCCHHCCCCCCCCCCCCCCCCCCCE
FTVTHISHRKDAIYHSTYTGRPPDEPAMLGVALNEVFVPILRKQYPEIVDFYLPPEGCSY
EEEEECCCCCHHHEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHCHHHEEEECCCCCCCE
RMAVISIRKQYPGHAKRVMMGAWSFLRQFMYTKFIVVVDEDVNCRDWQDVIWAITTRMDP
EHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHEEEEEECCCCCCCHHHHHHHHHHHCCCC
TRDTVMIDNTPIDYLDFASPVAGLGSKMGLDATNKWEGETNREWGTPIVMDEAVKRRVDD
CCCEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
IWDELGIEQSPTL
HHHHHCCCCCCCC
>Mature Secondary Structure 
SFKDLRSFISHLEECGELKRVSYPVDPYLEMTEIADRVLRAGGPALLFEQPKGHSMPVL
CHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCHH
ANLFGTPKRVAMALGKEDPLALRDVGELLAFLKEPEPPRGFKDAIAKIPMFKQALNMPPK
HHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHCHHHHHHHCCCCH
TVSRAPCQEVVMTGDDVDLTKLPIQHCWPGDVAPLVTWGLTITKGPRQKRQNLGIYRQQL
HHCCCCHHHHHCCCCCCCHHCCCHHHCCCCCCHHHHHHCEEECCCHHHHHHHHHHHHHHH
LGKNKLIMRWLSHRGGALDFRDFQEKHPGENYPVVVALGSDPVTILGAVTPVPDSMSEYA
HCCHHHHHHHHHCCCCCCCHHHHHHHCCCCCCCEEEEECCCCEEEEEECCCCCCCHHHHH
FAGLLRGERTEVVKALSCDLEVPATSEIILEGYIAPGEMAEEGPYGDHTGYYNETDSFPV
HHHHHCCCHHHHHHHHHCCCCCCCCCEEEEEECCCCCCHHCCCCCCCCCCCCCCCCCCCE
FTVTHISHRKDAIYHSTYTGRPPDEPAMLGVALNEVFVPILRKQYPEIVDFYLPPEGCSY
EEEEECCCCCHHHEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHCHHHEEEECCCCCCCE
RMAVISIRKQYPGHAKRVMMGAWSFLRQFMYTKFIVVVDEDVNCRDWQDVIWAITTRMDP
EHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHEEEEEECCCCCCCHHHHHHHHHHHCCCC
TRDTVMIDNTPIDYLDFASPVAGLGSKMGLDATNKWEGETNREWGTPIVMDEAVKRRVDD
CCCEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
IWDELGIEQSPTL
HHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA