Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
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Accession | NC_008700 |
Length | 4,306,142 |
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The map label for this gene is 119773545
Identifier: 119773545
GI number: 119773545
Start: 503066
End: 503383
Strand: Direct
Name: 119773545
Synonym: Sama_0405
Alternate gene names: NA
Gene position: 503066-503383 (Clockwise)
Preceding gene: 119773544
Following gene: 119773547
Centisome position: 11.68
GC content: 50.63
Gene sequence:
>318_bases ATGACAAACTATGTGATTAACCGCCGCCAACTGGTGTGTGTGGCGAGCTTTTTAGCGTTTCCCGGCAAAGAAGAAGCCCT GATTGAGGCCCTGGGGGCACTTATTCCCGATACCCGCCGGGAAGTGGGTTGCATCCGCTACGAGTTAAACCAAAGCCGCG ACGAGCCAAGGCGTATTACTTTTATCGAAAAGTTTGTGGATGTGGAGGCGTTTGACAGCCACTGTGCCAAGGATGCCATT CAGCATTATTTTCATCAGCAAATGCCCGAGCTGGTGGAGTCCTTCAAGGTAGAAACCTACCACGAGATCATTGTTTGA
Upstream 100 bases:
>100_bases GCGTTTTATACCTCACTTGGTTTTATACCAGCCTCCGACGTTTACCTTGAAGATGGGATCCCCCATCTGGATATGCGCTT TCATCAAAGGACATGAGAAG
Downstream 100 bases:
>100_bases GTCGGTTGAGATTTGGCCCCGGGCTGCAGTAGTAGCAAGACGTTAAAAAGCCCCTGAACGGGGCTTTTTTAATGCTGGAA AGCGGCGGTAGTTATCTTTT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 105; Mature: 104
Protein sequence:
>105_residues MTNYVINRRQLVCVASFLAFPGKEEALIEALGALIPDTRREVGCIRYELNQSRDEPRRITFIEKFVDVEAFDSHCAKDAI QHYFHQQMPELVESFKVETYHEIIV
Sequences:
>Translated_105_residues MTNYVINRRQLVCVASFLAFPGKEEALIEALGALIPDTRREVGCIRYELNQSRDEPRRITFIEKFVDVEAFDSHCAKDAI QHYFHQQMPELVESFKVETYHEIIV >Mature_104_residues TNYVINRRQLVCVASFLAFPGKEEALIEALGALIPDTRREVGCIRYELNQSRDEPRRITFIEKFVDVEAFDSHCAKDAIQ HYFHQQMPELVESFKVETYHEIIV
Specific function: Unknown
COG id: COG1359
COG function: function code S; Uncharacterized conserved protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 12275; Mature: 12144
Theoretical pI: Translated: 5.18; Mature: 5.18
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.9 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 4.8 %Cys+Met (Translated Protein) 2.9 %Cys (Mature Protein) 1.0 %Met (Mature Protein) 3.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTNYVINRRQLVCVASFLAFPGKEEALIEALGALIPDTRREVGCIRYELNQSRDEPRRIT CCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCHHHH FIEKFVDVEAFDSHCAKDAIQHYFHQQMPELVESFKVETYHEIIV HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure TNYVINRRQLVCVASFLAFPGKEEALIEALGALIPDTRREVGCIRYELNQSRDEPRRIT CCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCHHHH FIEKFVDVEAFDSHCAKDAIQHYFHQQMPELVESFKVETYHEIIV HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA