| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
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The map label for this gene is sglT [H]
Identifier: 119773444
GI number: 119773444
Start: 367949
End: 369739
Strand: Direct
Name: sglT [H]
Synonym: Sama_0303
Alternate gene names: 119773444
Gene position: 367949-369739 (Clockwise)
Preceding gene: 119773443
Following gene: 119773445
Centisome position: 8.54
GC content: 57.17
Gene sequence:
>1791_bases ATGACCCTGGCATGGGTGGATTTACTGGTTATAGGCGCGTATCTGCTGGGCACGTTGGGGCTTGGGGTTTATATCTCCCG CCTTGCCAGCAGAGACATGAATGCCTACTTTCTGGCGGGTAAGGAAATCCCCTGGTGGGCGCTTGGGGTTTCCAACGCCT CGGGCATGTTCGACATCGCGGGCACCATGTGGCTGGTGTCCATGTGTTTTGTTTACGGCCTGAAGAGTGCCTGGCTGCCC TGGGTGTGGCCCATCTTCAATCAGGTATTCCTGATGGTTTACCTGTCGGTGTGGCTGCGCCGCTCCAACGTGATGACAGG GGCCCAGTGGCTGCAGACCCGCTTTGGCAGTGGCAGGGGCGCCGAGTTGTGCCAGCTGGTGGTGGTGATATTTGCCATTG TCAGCGCCATCGGCTTTATCGCCTATGCCTTTAAAGGCATTGGAAAATTCGCGGCCATTTTCTTCCCGTGGCAGCTCTCG CCAGACACCTATGCCCTGATTATTTTTGCCGTTACCTGCCTGTATGTGATTAAGGGCGGCATGTATTCGGTGGTGTTTAC CGAGGTGATGCAGTTTGTGATCATGACCATAGCCGCCGTGGCCGTGGGCCTGATTGCCATTAATCTGGTCACCCCGGAGC AAATCAAGGCCGCCACCCCGGAGGGCTGGGATAACATCTGGTTTGGGTGGCAGCTCGATCTCAACTGGCAGGGACTGATT GACAGCGTGAACGACAAGATTCGCGCCGACAGTCTGGAGCTGATTGGTCTGATGATCATGATGATGCTGTTCAAGGGCGT GCTCTTTTCCATGGCGGGCCCTGTGCCCAACTACGATATGCAGCGCATTCTGGCGACCCGCTCCCCCAAGGAGGCGGCCA AGATGAGCGGCCTGGTGTCTTTGGTGATGTTTTTCCCCCGTTACATGATGGTGGCCGGTCTTACTGTGCTGGCGCTGGTG TATATGGGGCCGGAAATCCAGGCCCAGGGGGGCAGCTTCGACTTCGAGCAAATTCTGCCCTATGCCATCCATAACTTTGT GCCCGTGGGCCTGACTGGGCTGCTGATAGCCGGTTTGCTGGCGGCTTTTATGTCGACCCTGGCGGCATCGCTCAATGCCG CTCCCGTGTACTTTGTGAATGACATCTACAAGCGCTATTTCCGCCCGGATGCCGAGGAGAGAACCTACGTTAAGGTCAGC TATCTGGTGTCTCTGGTGCTGGTGCTGATTGGCGTGGGTCTGGGGCTGATGCTCTCCAGCATCAACGAGATCATGCAGTG GATCTTTGGTGCCCTCTTTGGCGGCTATGCCGCGGCCAATCTACTGAAGTGGCATTGGTGGCGCTTTAATGCCTATGGCT ACTTCTGGGGCATGATGGCGGGCTTGCTGGCGTCCTTGTGTCTGCCACTCTTTATGCCGGGTACTCATCCGCTGTTTGCC TTCCCGCTGCTGCTGGCGCTGAGTCTGGCCGGCTCTATCTTGGGGACGCTGGCGACCCGTCCTGAGCCGGACGAGGTGCT GTGCGCCTTCTACCGTCAGGTACGCCCCTGGGGCTGCTGGGGGCCGGTGCATGACAAGGTCAAGGAAGCCGATCCCGGCT TCGACGCGGATACACACCCACTGCGGGATATGGTCAATATTCTGGTCGGTATGGCCTGGCAAATCTGTTTGGTGGCCTTG CCCATCTACCTGGTTATCCAGCAATGGACTCAGGTGTGGGTGGCACTGGCACTGGCGATACTGACATCCTGGTTCCTGAA GAAAAACTGGTTGGATAAGTTGAAAGATTAA
Upstream 100 bases:
>100_bases CAAAGTGCATCCACATTGCTTTACTGGGCATGGATGAGGATACCAAGGCGGCTCTGGTGAAGGGCATTCGCTGTCAATCC CTGGTGCAGGAGGAAACCCA
Downstream 100 bases:
>100_bases TGAAAACAATAACTCTGAAAGAGGGCGCCCTGTCCTTACCACGTCTGACACCCTTGTTGTTAACCCCAACGCTGTTGACC TTCTCCTTACTCACGGCAGT
Product: Na+/solute symporter
Products: NA
Alternate protein names: Na(+)/glucose symporter [H]
Number of amino acids: Translated: 596; Mature: 595
Protein sequence:
>596_residues MTLAWVDLLVIGAYLLGTLGLGVYISRLASRDMNAYFLAGKEIPWWALGVSNASGMFDIAGTMWLVSMCFVYGLKSAWLP WVWPIFNQVFLMVYLSVWLRRSNVMTGAQWLQTRFGSGRGAELCQLVVVIFAIVSAIGFIAYAFKGIGKFAAIFFPWQLS PDTYALIIFAVTCLYVIKGGMYSVVFTEVMQFVIMTIAAVAVGLIAINLVTPEQIKAATPEGWDNIWFGWQLDLNWQGLI DSVNDKIRADSLELIGLMIMMMLFKGVLFSMAGPVPNYDMQRILATRSPKEAAKMSGLVSLVMFFPRYMMVAGLTVLALV YMGPEIQAQGGSFDFEQILPYAIHNFVPVGLTGLLIAGLLAAFMSTLAASLNAAPVYFVNDIYKRYFRPDAEERTYVKVS YLVSLVLVLIGVGLGLMLSSINEIMQWIFGALFGGYAAANLLKWHWWRFNAYGYFWGMMAGLLASLCLPLFMPGTHPLFA FPLLLALSLAGSILGTLATRPEPDEVLCAFYRQVRPWGCWGPVHDKVKEADPGFDADTHPLRDMVNILVGMAWQICLVAL PIYLVIQQWTQVWVALALAILTSWFLKKNWLDKLKD
Sequences:
>Translated_596_residues MTLAWVDLLVIGAYLLGTLGLGVYISRLASRDMNAYFLAGKEIPWWALGVSNASGMFDIAGTMWLVSMCFVYGLKSAWLP WVWPIFNQVFLMVYLSVWLRRSNVMTGAQWLQTRFGSGRGAELCQLVVVIFAIVSAIGFIAYAFKGIGKFAAIFFPWQLS PDTYALIIFAVTCLYVIKGGMYSVVFTEVMQFVIMTIAAVAVGLIAINLVTPEQIKAATPEGWDNIWFGWQLDLNWQGLI DSVNDKIRADSLELIGLMIMMMLFKGVLFSMAGPVPNYDMQRILATRSPKEAAKMSGLVSLVMFFPRYMMVAGLTVLALV YMGPEIQAQGGSFDFEQILPYAIHNFVPVGLTGLLIAGLLAAFMSTLAASLNAAPVYFVNDIYKRYFRPDAEERTYVKVS YLVSLVLVLIGVGLGLMLSSINEIMQWIFGALFGGYAAANLLKWHWWRFNAYGYFWGMMAGLLASLCLPLFMPGTHPLFA FPLLLALSLAGSILGTLATRPEPDEVLCAFYRQVRPWGCWGPVHDKVKEADPGFDADTHPLRDMVNILVGMAWQICLVAL PIYLVIQQWTQVWVALALAILTSWFLKKNWLDKLKD >Mature_595_residues TLAWVDLLVIGAYLLGTLGLGVYISRLASRDMNAYFLAGKEIPWWALGVSNASGMFDIAGTMWLVSMCFVYGLKSAWLPW VWPIFNQVFLMVYLSVWLRRSNVMTGAQWLQTRFGSGRGAELCQLVVVIFAIVSAIGFIAYAFKGIGKFAAIFFPWQLSP DTYALIIFAVTCLYVIKGGMYSVVFTEVMQFVIMTIAAVAVGLIAINLVTPEQIKAATPEGWDNIWFGWQLDLNWQGLID SVNDKIRADSLELIGLMIMMMLFKGVLFSMAGPVPNYDMQRILATRSPKEAAKMSGLVSLVMFFPRYMMVAGLTVLALVY MGPEIQAQGGSFDFEQILPYAIHNFVPVGLTGLLIAGLLAAFMSTLAASLNAAPVYFVNDIYKRYFRPDAEERTYVKVSY LVSLVLVLIGVGLGLMLSSINEIMQWIFGALFGGYAAANLLKWHWWRFNAYGYFWGMMAGLLASLCLPLFMPGTHPLFAF PLLLALSLAGSILGTLATRPEPDEVLCAFYRQVRPWGCWGPVHDKVKEADPGFDADTHPLRDMVNILVGMAWQICLVALP IYLVIQQWTQVWVALALAILTSWFLKKNWLDKLKD
Specific function: Actively transports glucose into cells by Na(+) cotransport [H]
COG id: COG0591
COG function: function code ER; Na+/proline symporter
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family [H]
Homologues:
Organism=Homo sapiens, GI109659836, Length=553, Percent_Identity=25.497287522604, Blast_Score=110, Evalue=5e-24, Organism=Homo sapiens, GI109659839, Length=569, Percent_Identity=24.2530755711775, Blast_Score=104, Evalue=2e-22, Organism=Homo sapiens, GI14140236, Length=594, Percent_Identity=23.9057239057239, Blast_Score=94, Evalue=4e-19, Organism=Homo sapiens, GI17941285, Length=494, Percent_Identity=25.5060728744939, Blast_Score=85, Evalue=2e-16, Organism=Homo sapiens, GI4507033, Length=432, Percent_Identity=25.9259259259259, Blast_Score=81, Evalue=2e-15, Organism=Homo sapiens, GI4507031, Length=597, Percent_Identity=22.7805695142379, Blast_Score=79, Evalue=1e-14, Organism=Homo sapiens, GI206597483, Length=562, Percent_Identity=25.2669039145907, Blast_Score=78, Evalue=3e-14,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001734 - InterPro: IPR018212 - InterPro: IPR019900 [H]
Pfam domain/function: PF00474 SSF [H]
EC number: NA
Molecular weight: Translated: 66449; Mature: 66318
Theoretical pI: Translated: 7.74; Mature: 7.74
Prosite motif: PS50283 NA_SOLUT_SYMP_3
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 4.9 %Met (Translated Protein) 6.0 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 4.7 %Met (Mature Protein) 5.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTLAWVDLLVIGAYLLGTLGLGVYISRLASRDMNAYFLAGKEIPWWALGVSNASGMFDIA CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCEEEEECCCCCCCHHHH GTMWLVSMCFVYGLKSAWLPWVWPIFNQVFLMVYLSVWLRRSNVMTGAQWLQTRFGSGRG HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCC AELCQLVVVIFAIVSAIGFIAYAFKGIGKFAAIFFPWQLSPDTYALIIFAVTCLYVIKGG HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCHHHHHHHHHHHHHHHHCC MYSVVFTEVMQFVIMTIAAVAVGLIAINLVTPEQIKAATPEGWDNIWFGWQLDLNWQGLI HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCCCCCCCCEEEEEEECCHHHHH DSVNDKIRADSLELIGLMIMMMLFKGVLFSMAGPVPNYDMQRILATRSPKEAAKMSGLVS HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHH LVMFFPRYMMVAGLTVLALVYMGPEIQAQGGSFDFEQILPYAIHNFVPVGLTGLLIAGLL HHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH AAFMSTLAASLNAAPVYFVNDIYKRYFRPDAEERTYVKVSYLVSLVLVLIGVGLGLMLSS HHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH INEIMQWIFGALFGGYAAANLLKWHWWRFNAYGYFWGMMAGLLASLCLPLFMPGTHPLFA HHHHHHHHHHHHHHHHHHHHHHHHHHEEECCHHHHHHHHHHHHHHHHHHHHCCCCCHHHH FPLLLALSLAGSILGTLATRPEPDEVLCAFYRQVRPWGCWGPVHDKVKEADPGFDADTHP HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHCCCCCCCCCCHH LRDMVNILVGMAWQICLVALPIYLVIQQWTQVWVALALAILTSWFLKKNWLDKLKD HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure TLAWVDLLVIGAYLLGTLGLGVYISRLASRDMNAYFLAGKEIPWWALGVSNASGMFDIA CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCEEEEECCCCCCCHHHH GTMWLVSMCFVYGLKSAWLPWVWPIFNQVFLMVYLSVWLRRSNVMTGAQWLQTRFGSGRG HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCC AELCQLVVVIFAIVSAIGFIAYAFKGIGKFAAIFFPWQLSPDTYALIIFAVTCLYVIKGG HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCHHHHHHHHHHHHHHHHCC MYSVVFTEVMQFVIMTIAAVAVGLIAINLVTPEQIKAATPEGWDNIWFGWQLDLNWQGLI HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCCCCCCCCEEEEEEECCHHHHH DSVNDKIRADSLELIGLMIMMMLFKGVLFSMAGPVPNYDMQRILATRSPKEAAKMSGLVS HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHH LVMFFPRYMMVAGLTVLALVYMGPEIQAQGGSFDFEQILPYAIHNFVPVGLTGLLIAGLL HHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH AAFMSTLAASLNAAPVYFVNDIYKRYFRPDAEERTYVKVSYLVSLVLVLIGVGLGLMLSS HHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH INEIMQWIFGALFGGYAAANLLKWHWWRFNAYGYFWGMMAGLLASLCLPLFMPGTHPLFA HHHHHHHHHHHHHHHHHHHHHHHHHHEEECCHHHHHHHHHHHHHHHHHHHHCCCCCHHHH FPLLLALSLAGSILGTLATRPEPDEVLCAFYRQVRPWGCWGPVHDKVKEADPGFDADTHP HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHCCCCCCCCCCHH LRDMVNILVGMAWQICLVALPIYLVIQQWTQVWVALALAILTSWFLKKNWLDKLKD HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 8652595; 10835424; 10757971 [H]