| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
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The map label for this gene is ebgA [C]
Identifier: 119773443
GI number: 119773443
Start: 365361
End: 367952
Strand: Direct
Name: ebgA [C]
Synonym: Sama_0302
Alternate gene names: 119773443
Gene position: 365361-367952 (Clockwise)
Preceding gene: 119773442
Following gene: 119773444
Centisome position: 8.48
GC content: 55.44
Gene sequence:
>2592_bases ATGACAACACATTCCTTCGAGCCTTTTGGTCAATCTCTGAACTCTTTGGGGCAATCAATGGACCTGGGCGGCCAGTGGCA ATTTCGTCAGCAGGGTAAAGCCGAATGGCTTCCGGCTCAGGTGCCCGGCTGTAACTTTACCGACCTGCTCGCCAATGGTC TGATTGACGACCCCTTCTATCGGGACAATGAAGAAAAGCTGCAATGGATTGAGCAAGAGGACTGGCAGTATCGCAAGACC TTTAGTCTGGATACTGACTGGTGGCAAAACGATGAGGTGCAACTGGTCGCCGATGGCCTGGATACCTATTGCGACCTGTA CCTCAATGGCCATAAGCTTGGCGACAGTCGCAACATGTTTATTGGCCAGCGTATTTCCTGTAAGTCGCTGCTGAAGGTCG GGGAAAACCTGCTGGAGATTCATTTTCGTTCACCCATTAAGGAAACCCTGCCGCTGCATCAGGCGGCGGGCTTTACCTAT CCGGCGGAAAACGACAAGTCGGTCGAGAAACTCAGTGTGTACAATCGCAAGGCGCCCTGCCATTTTGGCTGGGACTGGGG CCCAAGGTTTGTCACCAGTGGCATCTGGCGTGCCATCGGTCTGCAGGGAATCAAACGAGGCCGTATTGATGGGGTGCATT TTGTGCAGCATAGCCTCAGCAGTGACAAGGCTGAGTTCAGCTTCGATGTGAGCCTGGCGCTGTGCAATACAGACAATCAG GAAGGCGAGCTGAGTCTGCGGGTTGCGTGCCCGGCTGCGCCCGAGCTTAACCGGGAAGTGCCACTTAACCGTGACGTGCC GCTGACTGAACAATCCGCGCTGCGATTGGACTTCGAGCTCACCAATCCCAATCTCTGGTGGCCCAATGGTCTGGGTGAAG CCCACCTATATGAGTTCCATTTTACCTTGCTCGCCGGCGATGAGCCGTTGGCACAGCACAGCCAGGCCGTTGGTCTGCGT ACCCTGGAAGTCATCAACGAAGCTGATGGCATGGGGCAATCCTTCTACCTCAGGGTCAATGGCCAGCCGGTGTTTATGAA GGGGGCCAACTATATTCCCGGTGACAGCTTTATCCACCGCATGACACCCGATCGTCATCAGGCTGACTTTGACGCCGTGG TGGATGCCAACATGAATATGCTGCGGGTATGGGGCGGTGGTGTGTATCAGGATGAGGTCTTTTATCGCCTGGCCGATGAA AACGGCATCCTGATTTGGCAGGATTTTATGTTCGCCTGCTCCCTGTACCCGGCCGATGAAGCCTTTCTGGACAACGTCCG CGAAGAAGCGGTTTATAACATCAAGCGCCTGCGCAATCATCCCTGTTTGGCACTCTGGTGCGGCAACAACGAAGTGGACA TGGGTATCAAGCATTGGCAGTGGCCTGAGAAGTTTGGCTACAGCGATGAACTCTATGCCCGCCTGAAGAACGACTACATC CGCTTGTTCGATGAGTGTCTGCCTGGGGCCGTGGCCGAGTTGGACGCCGGACGCTTTTATTTGCGCTCGTCCCCCATAGG CTTCTGGGAAGAAGACATGGACCACATAGGCAATCACCATTACTGGGGGGTGTGGCACGGCGAGGAGCCCTTCAGCGAAT ATCAGAAACGTATTCCCCGCTTTATGAGTGAGTTCGGCTTTCAGTCGTTCCCGCTGGCCTCGTCCATGGCGCGTTTTACC GAGGAGACTGACTGGCATCTGGAATCAAGCGTGCTCAGGGTGCATCAGAAACACCCCCGGGGTAACAAGCTTATTCGCAG CTACATGGAGCAGGAATACCGGGATCCGGAAAACTTCCCACGACTGTTGTTTTTAAGTCAGGTACAACAGGCAGAAGGCC TGAAGCTGGCGTTTGAGGCCCACAGGGCTGCGCGGCCATTTTGCATGGGCAGCCTCTACTGGCAGCTTAACGACACCTGG CCCGCGGCGTCCTGGTCCGGTATCGATTATTACGGCCGCTGGAAGGCGCTGCACTATCAGGCCAAACGCAGTTTCCGCAC CGACCTGCTGGTGGTGGATGAGGTCGATGGCGCTGTTCGTGTCCGTTTGGTGAGCGACCGCCTGAAGTCGGTTAAGGCAA GGCTCGTGCTTGAGCTGCTGGACTTTGATGGCAACTGCCTGTGGCAGGAGCAGCAAGCGCTTGATACCCCAAAAAATACC AGCACCCAGGTATGCCAGTTGGAGAGGGCAAGCCTGCTTGGCGAGCACAATCCCTGTCAGCTGATGCTGAGGGGACGCCT GCTGGATGAGCAGGGGCAACTGCTGACCGATTGCCTGTATTATTTTGTGCCGAGCAAAGATCTGGCACTGAAAACGCCGG CGCTGACCCTTGAGCCAAGCTTCGATGCTGAGGGGCTCCGCCTGACCCTTAACACCAATACGCTTATTCGCCAGTGCCAT TTGGAGCTGCCTGAAGTTGCCGGTAATTGCTCTGGTCATTGCTCTGGTAATTTTTCCGACAACTTCTTCGATTTGGTCCC CGGCGAGCCAAAGTGCATCCACATTGCTTTACTGGGCATGGATGAGGATACCAAGGCGGCTCTGGTGAAGGGCATTCGCT GTCAATCCCTGGTGCAGGAGGAAACCCAATGA
Upstream 100 bases:
>100_bases GCGTGAGCCAGGCAAAGGTGGCTGAGCTGGTAGCCAATATTCAGGCCAATACCTTATTACAAGTGCCGCAAGGGCGGACT TTTACATGTTGAAGAGCATT
Downstream 100 bases:
>100_bases CCCTGGCATGGGTGGATTTACTGGTTATAGGCGCGTATCTGCTGGGCACGTTGGGGCTTGGGGTTTATATCTCCCGCCTT GCCAGCAGAGACATGAATGC
Product: glycoside hydrolase family protein
Products: NA
Alternate protein names: Glycoside Hydrolase Family Protein; Beta-Mannosidase Protein; Glycoside Hydrolase; Mannosidase; Coagulation Factor 5/8 Type Domain Protein; Glycoside Hydrolase Family 2 Protein; Glycosidase; O-Glycosyl Hydrolase; Glycosyl Hydrolase; Glycoside Hydrolase Family 2 TIM Barrel; Beta-Galactosidase/Beta-Glucuronidase; Beta-Glucuronidase; Exported Glycosyl Hydrolase; Beta-Galactosidase/Beta- Glucuronidase Family Protein; Beta-Galactosidase/Beta; Exported Beta-Mannosidase-Like Glycosidase; Beta-D-Mannosidase; Mannosylglycoprotein Endo-Beta-Mannosidase; Beta-Mannosidase-Related Protein; Beta-Mannosidase Man2A; BETA-Mannosidase Protein; DS Domain/Family 2 Glycosyl Hydrolase
Number of amino acids: Translated: 863; Mature: 862
Protein sequence:
>863_residues MTTHSFEPFGQSLNSLGQSMDLGGQWQFRQQGKAEWLPAQVPGCNFTDLLANGLIDDPFYRDNEEKLQWIEQEDWQYRKT FSLDTDWWQNDEVQLVADGLDTYCDLYLNGHKLGDSRNMFIGQRISCKSLLKVGENLLEIHFRSPIKETLPLHQAAGFTY PAENDKSVEKLSVYNRKAPCHFGWDWGPRFVTSGIWRAIGLQGIKRGRIDGVHFVQHSLSSDKAEFSFDVSLALCNTDNQ EGELSLRVACPAAPELNREVPLNRDVPLTEQSALRLDFELTNPNLWWPNGLGEAHLYEFHFTLLAGDEPLAQHSQAVGLR TLEVINEADGMGQSFYLRVNGQPVFMKGANYIPGDSFIHRMTPDRHQADFDAVVDANMNMLRVWGGGVYQDEVFYRLADE NGILIWQDFMFACSLYPADEAFLDNVREEAVYNIKRLRNHPCLALWCGNNEVDMGIKHWQWPEKFGYSDELYARLKNDYI RLFDECLPGAVAELDAGRFYLRSSPIGFWEEDMDHIGNHHYWGVWHGEEPFSEYQKRIPRFMSEFGFQSFPLASSMARFT EETDWHLESSVLRVHQKHPRGNKLIRSYMEQEYRDPENFPRLLFLSQVQQAEGLKLAFEAHRAARPFCMGSLYWQLNDTW PAASWSGIDYYGRWKALHYQAKRSFRTDLLVVDEVDGAVRVRLVSDRLKSVKARLVLELLDFDGNCLWQEQQALDTPKNT STQVCQLERASLLGEHNPCQLMLRGRLLDEQGQLLTDCLYYFVPSKDLALKTPALTLEPSFDAEGLRLTLNTNTLIRQCH LELPEVAGNCSGHCSGNFSDNFFDLVPGEPKCIHIALLGMDEDTKAALVKGIRCQSLVQEETQ
Sequences:
>Translated_863_residues MTTHSFEPFGQSLNSLGQSMDLGGQWQFRQQGKAEWLPAQVPGCNFTDLLANGLIDDPFYRDNEEKLQWIEQEDWQYRKT FSLDTDWWQNDEVQLVADGLDTYCDLYLNGHKLGDSRNMFIGQRISCKSLLKVGENLLEIHFRSPIKETLPLHQAAGFTY PAENDKSVEKLSVYNRKAPCHFGWDWGPRFVTSGIWRAIGLQGIKRGRIDGVHFVQHSLSSDKAEFSFDVSLALCNTDNQ EGELSLRVACPAAPELNREVPLNRDVPLTEQSALRLDFELTNPNLWWPNGLGEAHLYEFHFTLLAGDEPLAQHSQAVGLR TLEVINEADGMGQSFYLRVNGQPVFMKGANYIPGDSFIHRMTPDRHQADFDAVVDANMNMLRVWGGGVYQDEVFYRLADE NGILIWQDFMFACSLYPADEAFLDNVREEAVYNIKRLRNHPCLALWCGNNEVDMGIKHWQWPEKFGYSDELYARLKNDYI RLFDECLPGAVAELDAGRFYLRSSPIGFWEEDMDHIGNHHYWGVWHGEEPFSEYQKRIPRFMSEFGFQSFPLASSMARFT EETDWHLESSVLRVHQKHPRGNKLIRSYMEQEYRDPENFPRLLFLSQVQQAEGLKLAFEAHRAARPFCMGSLYWQLNDTW PAASWSGIDYYGRWKALHYQAKRSFRTDLLVVDEVDGAVRVRLVSDRLKSVKARLVLELLDFDGNCLWQEQQALDTPKNT STQVCQLERASLLGEHNPCQLMLRGRLLDEQGQLLTDCLYYFVPSKDLALKTPALTLEPSFDAEGLRLTLNTNTLIRQCH LELPEVAGNCSGHCSGNFSDNFFDLVPGEPKCIHIALLGMDEDTKAALVKGIRCQSLVQEETQ >Mature_862_residues TTHSFEPFGQSLNSLGQSMDLGGQWQFRQQGKAEWLPAQVPGCNFTDLLANGLIDDPFYRDNEEKLQWIEQEDWQYRKTF SLDTDWWQNDEVQLVADGLDTYCDLYLNGHKLGDSRNMFIGQRISCKSLLKVGENLLEIHFRSPIKETLPLHQAAGFTYP AENDKSVEKLSVYNRKAPCHFGWDWGPRFVTSGIWRAIGLQGIKRGRIDGVHFVQHSLSSDKAEFSFDVSLALCNTDNQE GELSLRVACPAAPELNREVPLNRDVPLTEQSALRLDFELTNPNLWWPNGLGEAHLYEFHFTLLAGDEPLAQHSQAVGLRT LEVINEADGMGQSFYLRVNGQPVFMKGANYIPGDSFIHRMTPDRHQADFDAVVDANMNMLRVWGGGVYQDEVFYRLADEN GILIWQDFMFACSLYPADEAFLDNVREEAVYNIKRLRNHPCLALWCGNNEVDMGIKHWQWPEKFGYSDELYARLKNDYIR LFDECLPGAVAELDAGRFYLRSSPIGFWEEDMDHIGNHHYWGVWHGEEPFSEYQKRIPRFMSEFGFQSFPLASSMARFTE ETDWHLESSVLRVHQKHPRGNKLIRSYMEQEYRDPENFPRLLFLSQVQQAEGLKLAFEAHRAARPFCMGSLYWQLNDTWP AASWSGIDYYGRWKALHYQAKRSFRTDLLVVDEVDGAVRVRLVSDRLKSVKARLVLELLDFDGNCLWQEQQALDTPKNTS TQVCQLERASLLGEHNPCQLMLRGRLLDEQGQLLTDCLYYFVPSKDLALKTPALTLEPSFDAEGLRLTLNTNTLIRQCHL ELPEVAGNCSGHCSGNFSDNFFDLVPGEPKCIHIALLGMDEDTKAALVKGIRCQSLVQEETQ
Specific function: The Wild-Type Enzyme Is An Ineffective Lactase. Two Classes Of Point Mutations Dramatically Improve Activity Of The Enzyme. [C]
COG id: COG3250
COG function: function code G; Beta-galactosidase/beta-glucuronidase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Homo sapiens, GI84798622, Length=703, Percent_Identity=31.7211948790896, Blast_Score=341, Evalue=2e-93, Organism=Caenorhabditis elegans, GI17550784, Length=725, Percent_Identity=29.5172413793103, Blast_Score=305, Evalue=7e-83, Organism=Drosophila melanogaster, GI24643838, Length=673, Percent_Identity=32.9866270430906, Blast_Score=303, Evalue=3e-82, Organism=Drosophila melanogaster, GI24643840, Length=617, Percent_Identity=33.8735818476499, Blast_Score=278, Evalue=1e-74,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: 3.2.1.25
Molecular weight: Translated: 98999; Mature: 98867
Theoretical pI: Translated: 4.94; Mature: 4.94
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.3 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 4.3 %Cys+Met (Translated Protein) 2.3 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 4.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTTHSFEPFGQSLNSLGQSMDLGGQWQFRQQGKAEWLPAQVPGCNFTDLLANGLIDDPFY CCCCCCCHHHHHHHHHHHCCCCCCCEEHHHCCCCCCCCCCCCCCCHHHHHHCCCCCCCCC RDNEEKLQWIEQEDWQYRKTFSLDTDWWQNDEVQLVADGLDTYCDLYLNGHKLGDSRNMF CCCHHHHHHHHCCCCCEEEEEECCCCCCCCCCEEEEECCCCCEEEEEECCEEECCCCCEE IGQRISCKSLLKVGENLLEIHFRSPIKETLPLHQAAGFTYPAENDKSVEKLSVYNRKAPC ECCCCCHHHHHHHCCHHEEHHHCCCHHHHCCHHHHCCCCCCCCCCCCHHHHHHHCCCCCC HFGWDWGPRFVTSGIWRAIGLQGIKRGRIDGVHFVQHSLSSDKAEFSFDVSLALCNTDNQ CCCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCEEEEEEEEEECCCCC EGELSLRVACPAAPELNREVPLNRDVPLTEQSALRLDFELTNPNLWWPNGLGEAHLYEFH CCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCEECCCCCCCCEEEEEE FTLLAGDEPLAQHSQAVGLRTLEVINEADGMGQSFYLRVNGQPVFMKGANYIPGDSFIHR EEEEECCCCHHHHHHHHCHHHHHHHHHCCCCCCEEEEEECCCEEEEECCCCCCCCHHHCC MTPDRHQADFDAVVDANMNMLRVWGGGVYQDEVFYRLADENGILIWQDFMFACSLYPADE CCCCCCCCCCHHEECCCCCEEEEECCCEECCCEEEEEECCCCEEEEECHHHHHCCCCCCH AFLDNVREEAVYNIKRLRNHPCLALWCGNNEVDMGIKHWQWPEKFGYSDELYARLKNDYI HHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCHHHCCCCHHHHHHHHHHHH RLFDECLPGAVAELDAGRFYLRSSPIGFWEEDMDHIGNHHYWGVWHGEEPFSEYQKRIPR HHHHHHCCCHHHHCCCCEEEEECCCCCCCHHHHHHCCCCEEEEEECCCCHHHHHHHHHHH FMSEFGFQSFPLASSMARFTEETDWHLESSVLRVHQKHPRGNKLIRSYMEQEYRDPENFP HHHHHCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCH RLLFLSQVQQAEGLKLAFEAHRAARPFCMGSLYWQLNDTWPAASWSGIDYYGRWKALHYQ HHHHHHHHHHCCCCEEEEHHHHCCCCEEEEEEEEEECCCCCCCCCCCCCCCCCHHHHHHH AKRSFRTDLLVVDEVDGAVRVRLVSDRLKSVKARLVLELLDFDGNCLWQEQQALDTPKNT HHHCCCCCEEEEECCCCEEEEEEHHHHHHHHHHHHHHHHHCCCCCEEECHHHHCCCCCCC STQVCQLERASLLGEHNPCQLMLRGRLLDEQGQLLTDCLYYFVPSKDLALKTPALTLEPS CHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCHHHHHHHHHHCCCCCCEEECCEEEECCC FDAEGLRLTLNTNTLIRQCHLELPEVAGNCSGHCSGNFSDNFFDLVPGEPKCIHIALLGM CCCCCEEEEECCHHHHHHHHCCCHHHCCCCCCCCCCCCCCCEEECCCCCCCEEEEEEEEC DEDTKAALVKGIRCQSLVQEETQ CCCHHHHHHHCHHHHHHHHHCCC >Mature Secondary Structure TTHSFEPFGQSLNSLGQSMDLGGQWQFRQQGKAEWLPAQVPGCNFTDLLANGLIDDPFY CCCCCCHHHHHHHHHHHCCCCCCCEEHHHCCCCCCCCCCCCCCCHHHHHHCCCCCCCCC RDNEEKLQWIEQEDWQYRKTFSLDTDWWQNDEVQLVADGLDTYCDLYLNGHKLGDSRNMF CCCHHHHHHHHCCCCCEEEEEECCCCCCCCCCEEEEECCCCCEEEEEECCEEECCCCCEE IGQRISCKSLLKVGENLLEIHFRSPIKETLPLHQAAGFTYPAENDKSVEKLSVYNRKAPC ECCCCCHHHHHHHCCHHEEHHHCCCHHHHCCHHHHCCCCCCCCCCCCHHHHHHHCCCCCC HFGWDWGPRFVTSGIWRAIGLQGIKRGRIDGVHFVQHSLSSDKAEFSFDVSLALCNTDNQ CCCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCEEEEEEEEEECCCCC EGELSLRVACPAAPELNREVPLNRDVPLTEQSALRLDFELTNPNLWWPNGLGEAHLYEFH CCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCEECCCCCCCCEEEEEE FTLLAGDEPLAQHSQAVGLRTLEVINEADGMGQSFYLRVNGQPVFMKGANYIPGDSFIHR EEEEECCCCHHHHHHHHCHHHHHHHHHCCCCCCEEEEEECCCEEEEECCCCCCCCHHHCC MTPDRHQADFDAVVDANMNMLRVWGGGVYQDEVFYRLADENGILIWQDFMFACSLYPADE CCCCCCCCCCHHEECCCCCEEEEECCCEECCCEEEEEECCCCEEEEECHHHHHCCCCCCH AFLDNVREEAVYNIKRLRNHPCLALWCGNNEVDMGIKHWQWPEKFGYSDELYARLKNDYI HHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCHHHCCCCHHHHHHHHHHHH RLFDECLPGAVAELDAGRFYLRSSPIGFWEEDMDHIGNHHYWGVWHGEEPFSEYQKRIPR HHHHHHCCCHHHHCCCCEEEEECCCCCCCHHHHHHCCCCEEEEEECCCCHHHHHHHHHHH FMSEFGFQSFPLASSMARFTEETDWHLESSVLRVHQKHPRGNKLIRSYMEQEYRDPENFP HHHHHCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCH RLLFLSQVQQAEGLKLAFEAHRAARPFCMGSLYWQLNDTWPAASWSGIDYYGRWKALHYQ HHHHHHHHHHCCCCEEEEHHHHCCCCEEEEEEEEEECCCCCCCCCCCCCCCCCHHHHHHH AKRSFRTDLLVVDEVDGAVRVRLVSDRLKSVKARLVLELLDFDGNCLWQEQQALDTPKNT HHHCCCCCEEEEECCCCEEEEEEHHHHHHHHHHHHHHHHHCCCCCEEECHHHHCCCCCCC STQVCQLERASLLGEHNPCQLMLRGRLLDEQGQLLTDCLYYFVPSKDLALKTPALTLEPS CHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCHHHHHHHHHHCCCCCCEEECCEEEECCC FDAEGLRLTLNTNTLIRQCHLELPEVAGNCSGHCSGNFSDNFFDLVPGEPKCIHIALLGM CCCCCEEEEECCHHHHHHHHCCCHHHCCCCCCCCCCCCCCCEEECCCCCCCEEEEEEEEC DEDTKAALVKGIRCQSLVQEETQ CCCHHHHHHHCHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA