| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
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The map label for this gene is 119773438
Identifier: 119773438
GI number: 119773438
Start: 359770
End: 360816
Strand: Direct
Name: 119773438
Synonym: Sama_0297
Alternate gene names: NA
Gene position: 359770-360816 (Clockwise)
Preceding gene: 119773437
Following gene: 119773439
Centisome position: 8.35
GC content: 53.2
Gene sequence:
>1047_bases TTGGGCAACTCACGCCTTCATGTCTTCTACTATGGCTGGTACGGCAATCCGCAGCAGGATGGCCAGTGGCAACATTGGAA CCACAGGGTATTGCCCTATGGTGATATCCCCCTCGAGGGGCGTTTGGATTTTCCCGGTGCTGATGACATAGGGGCCAACT TTTACCCATCCCTTGGCAGTTACAGCTCCCACGATCCCGAGATTATCGAGCAGCATCTGGAGATGATGCGCCAGGCCGGC ATAGGTGTGGTGTCGGTAAGCTGGCTGGGGGCCGACGATTTTGCTGCCAGGTCCATCGATTTCTTTATGGACAAAGCGGC CGAAAAAGGACTGCAGATTAATTTTCATATTGAACCCAACTACCGCAGCGCCGAAGAGTTCCACGCCATTATTGCTGAAT TAATGCGGAAATTTGGCACCCATCCCGCCTTGTACCGTTATCGGGGCAAACCCCTTTACTATGTATACGACTCCTACAAG ATGCCGGTGAGTGAATGGCAAAAGCTGTTGCTGCCGGGAGGAGAGCTTAGCCTGAGAACTCCTGAACTCGATGGGCAATT TATCGGTTTATGGGTAAATCAGGGCGAAGAAGCCTTTTTTCTCGATACCGGCTTCGATGGTTTTTACACCTACTTTGCCA GCGAGGGCTTTGTGTGGGGCAGTACCAGTACCAACTGGCCTTACCTGGCTGGCTGGGCCAGTCGTCATGGCAAACTCTTT ATTCCCAGTGTCGGCCCCGGCTATGCCGATGACAGAATTCGTCCCTGGAACGGTGCCAACTTCAAGGCCCGTGAGCAGGG CCGTTATTACGACCGCATGTTCAGTCAGGCACTTAACACCAAGCCAGACATAGTAACCATTACCTCCTTCAATGAGTGGC ACGAAGGCACCCAGATTGAGCCCGCCGTCGTGAAGCAACTGCCCGATTACCGCTATCTGGATTATGGCGACTTACCCGAA GACTATTATTTGCAGCGTACCCTGGACTGGAGCCGCAAGCTCTCGGCCATCCCGGTTAATTCTTCGCAGCAGGAAGGCAG TCGATGA
Upstream 100 bases:
>100_bases GCAAAGCTGGAACACGACCTTGATACAGATTTACCGCATTCTATTGCTGGTGTTGCTCACCTGCTCGCTGCCGGGGTGCA GCAAGGGACCATCCGAGCCT
Downstream 100 bases:
>100_bases TTGAAATGACCAGAATGGCAGCCTGCGCGGCTGTTCACCATGACACACAGGCAACCCAGACAGGGGCAGCTTATGCCCCG GCAGAACAGGGGGGAGAGCC
Product: endo-alpha-mannosidase
Products: NA
Alternate protein names: Glyco-Mannosidase; Secreted Glycosyl Hydrolase
Number of amino acids: Translated: 348; Mature: 347
Protein sequence:
>348_residues MGNSRLHVFYYGWYGNPQQDGQWQHWNHRVLPYGDIPLEGRLDFPGADDIGANFYPSLGSYSSHDPEIIEQHLEMMRQAG IGVVSVSWLGADDFAARSIDFFMDKAAEKGLQINFHIEPNYRSAEEFHAIIAELMRKFGTHPALYRYRGKPLYYVYDSYK MPVSEWQKLLLPGGELSLRTPELDGQFIGLWVNQGEEAFFLDTGFDGFYTYFASEGFVWGSTSTNWPYLAGWASRHGKLF IPSVGPGYADDRIRPWNGANFKAREQGRYYDRMFSQALNTKPDIVTITSFNEWHEGTQIEPAVVKQLPDYRYLDYGDLPE DYYLQRTLDWSRKLSAIPVNSSQQEGSR
Sequences:
>Translated_348_residues MGNSRLHVFYYGWYGNPQQDGQWQHWNHRVLPYGDIPLEGRLDFPGADDIGANFYPSLGSYSSHDPEIIEQHLEMMRQAG IGVVSVSWLGADDFAARSIDFFMDKAAEKGLQINFHIEPNYRSAEEFHAIIAELMRKFGTHPALYRYRGKPLYYVYDSYK MPVSEWQKLLLPGGELSLRTPELDGQFIGLWVNQGEEAFFLDTGFDGFYTYFASEGFVWGSTSTNWPYLAGWASRHGKLF IPSVGPGYADDRIRPWNGANFKAREQGRYYDRMFSQALNTKPDIVTITSFNEWHEGTQIEPAVVKQLPDYRYLDYGDLPE DYYLQRTLDWSRKLSAIPVNSSQQEGSR >Mature_347_residues GNSRLHVFYYGWYGNPQQDGQWQHWNHRVLPYGDIPLEGRLDFPGADDIGANFYPSLGSYSSHDPEIIEQHLEMMRQAGI GVVSVSWLGADDFAARSIDFFMDKAAEKGLQINFHIEPNYRSAEEFHAIIAELMRKFGTHPALYRYRGKPLYYVYDSYKM PVSEWQKLLLPGGELSLRTPELDGQFIGLWVNQGEEAFFLDTGFDGFYTYFASEGFVWGSTSTNWPYLAGWASRHGKLFI PSVGPGYADDRIRPWNGANFKAREQGRYYDRMFSQALNTKPDIVTITSFNEWHEGTQIEPAVVKQLPDYRYLDYGDLPED YYLQRTLDWSRKLSAIPVNSSQQEGSR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Homo sapiens, GI41393556, Length=350, Percent_Identity=45.7142857142857, Blast_Score=304, Evalue=1e-82, Organism=Homo sapiens, GI164698460, Length=345, Percent_Identity=43.1884057971014, Blast_Score=280, Evalue=2e-75, Organism=Homo sapiens, GI22749033, Length=200, Percent_Identity=47, Blast_Score=187, Evalue=9e-48, Organism=Homo sapiens, GI72534766, Length=127, Percent_Identity=40.9448818897638, Blast_Score=100, Evalue=2e-21, Organism=Drosophila melanogaster, GI19920762, Length=300, Percent_Identity=29.3333333333333, Blast_Score=120, Evalue=1e-27,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 40124; Mature: 39993
Theoretical pI: Translated: 5.09; Mature: 5.09
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 2.0 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 1.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGNSRLHVFYYGWYGNPQQDGQWQHWNHRVLPYGDIPLEGRLDFPGADDIGANFYPSLGS CCCCEEEEEEEEECCCCCCCCCCCCCCCEECCCCCCCCCCEECCCCCCCCCCCCCCCCCC YSSHDPEIIEQHLEMMRQAGIGVVSVSWLGADDFAARSIDFFMDKAAEKGLQINFHIEPN CCCCCHHHHHHHHHHHHHCCCCEEEEEEECCCHHHHHHHHHHHHHHHHCCCEEEEEECCC YRSAEEFHAIIAELMRKFGTHPALYRYRGKPLYYVYDSYKMPVSEWQKLLLPGGELSLRT CCCHHHHHHHHHHHHHHHCCCCCCEEECCCEEEEEECCCCCCHHHHHHHHCCCCCEEEEC PELDGQFIGLWVNQGEEAFFLDTGFDGFYTYFASEGFVWGSTSTNWPYLAGWASRHGKLF CCCCCEEEEEEEECCCEEEEEECCCCHHHHEECCCCEEECCCCCCCCEEEEHHCCCCEEE IPSVGPGYADDRIRPWNGANFKAREQGRYYDRMFSQALNTKPDIVTITSFNEWHEGTQIE ECCCCCCCCCCCCCCCCCCCCCHHHCCHHHHHHHHHHHCCCCCEEEEECCHHHCCCCCCC PAVVKQLPDYRYLDYGDLPEDYYLQRTLDWSRKLSAIPVNSSQQEGSR HHHHHHCCCCCCCCCCCCCHHHHHHHHHCHHHCCEEECCCCCCCCCCC >Mature Secondary Structure GNSRLHVFYYGWYGNPQQDGQWQHWNHRVLPYGDIPLEGRLDFPGADDIGANFYPSLGS CCCEEEEEEEEECCCCCCCCCCCCCCCEECCCCCCCCCCEECCCCCCCCCCCCCCCCCC YSSHDPEIIEQHLEMMRQAGIGVVSVSWLGADDFAARSIDFFMDKAAEKGLQINFHIEPN CCCCCHHHHHHHHHHHHHCCCCEEEEEEECCCHHHHHHHHHHHHHHHHCCCEEEEEECCC YRSAEEFHAIIAELMRKFGTHPALYRYRGKPLYYVYDSYKMPVSEWQKLLLPGGELSLRT CCCHHHHHHHHHHHHHHHCCCCCCEEECCCEEEEEECCCCCCHHHHHHHHCCCCCEEEEC PELDGQFIGLWVNQGEEAFFLDTGFDGFYTYFASEGFVWGSTSTNWPYLAGWASRHGKLF CCCCCEEEEEEEECCCEEEEEECCCCHHHHEECCCCEEECCCCCCCCEEEEHHCCCCEEE IPSVGPGYADDRIRPWNGANFKAREQGRYYDRMFSQALNTKPDIVTITSFNEWHEGTQIE ECCCCCCCCCCCCCCCCCCCCCHHHCCHHHHHHHHHHHCCCCCEEEEECCHHHCCCCCCC PAVVKQLPDYRYLDYGDLPEDYYLQRTLDWSRKLSAIPVNSSQQEGSR HHHHHHCCCCCCCCCCCCCHHHHHHHHHCHHHCCEEECCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA