| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
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The map label for this gene is 119773408
Identifier: 119773408
GI number: 119773408
Start: 306124
End: 307608
Strand: Direct
Name: 119773408
Synonym: Sama_0267
Alternate gene names: NA
Gene position: 306124-307608 (Clockwise)
Preceding gene: 119773401
Following gene: 119773409
Centisome position: 7.11
GC content: 60.2
Gene sequence:
>1485_bases TTGCAGCCAGGCAGTTTGTTTACCACGGTGGGTTGTGACAATGGTCGCCGTACCGGCGCCATTGGCTTGGTGACCTACAC CCTTCCCGGGATTCTGGTGTTGCTGTTTGGTAGCGGCCATTGGTTGTGGCTGCCCGGAATGCTGCTTGCAGCGCTGTTTG GCCTGTCGCTGATGCGTCGCTGCCGCGACGCCCACAGGCCCCGTGGCTATCTGGTGGCGGCTTTGGTGCCTTTGCCTCTC TGGCTGTTAGTGCTGAGTATGGCGGGTAATGCCGCCCTGGGACTGATTTTGTTTGCCCTGGGGCTTGGTATCACCCTCTT GGTCAGCGTCTTGCCATCACGCCCCGTGAAAGATTATGTCGATGGGTATTGGTCGGCAGACATGCCCGCGCCCGAACCTC TGACCCCGAGGCGTGAGCCGACTCTCGGTGGTGAAGCGCCCGATGACGCCTTTGATTCAGCCTGGGATGATTCCGACGAA GAAGAAACCGAGGCGCTCGGCCCATGGCACACCGCCAGCTCTGCAGACCATGACACCGCCAGGGCTCACGGCCAACCAAT AAAGCCGCAGCCACATGCGCGGTTTCGGCAAGACACTGTTCAGGATTATTCCGCCACTGAGCAGGACAAGACCGCTGCGT TGGCCGTGTTTGGCATGTCAGCAACCCGTGAGCAACACCTTGTCATCGAAGCCAATCACGGCATCAATGTCGCCAGCAGG CACTCCCATGACGAGCCGGACCAGACAATCGATGCGCGCCACTCCCGGGATGCAGACCCTCACCATCAGGATACCCCCAT CTGGCAGCAATTTACCCAGCGCAGGGCTGTCACCGGCATGGGGGATGACGATATCGCCGACGATACGCCTCCTTCGGGCA ATGAAACCTATGACTCCGAGCCAGAACCCCGGCCGCTGAGAAGTTGGAGCGATGCCTTCAATGGCGATGGTTCGCTCGAG GTGCTGATGGAGGCCATCTACCTGCACCTTAAAAATTGGTGGCGCTTCTATTTATCCGGCGCGGCGGCTGTGCTGTTTGG GGTGGCGGTTGTCGCCATGGGTATGCGTTTGAGCAGTGCCCCCGAGGAGATAGGCAGCAGTGCAACCGGCAGCCAAGGCG ACGCTTTGCAGGCCTCCACCCGACTCGAGTCCGGCCTGGAGCTGGCATTGGATAACGAGGCCCTCATTCTCAGCTGGCAT GCCAACAGCCGCAGTAACGGCATTATCTGGTCACTCGCTACGGCAGAAGGCGAGCGCCACTGTGCCAGTCTGCTGTTTAA CAACGGCAACCGATATCGCCCAATGCAGGTGGCCGATGAGCAAGGAATGCGCCGTGCGCGCTTTTCACCGCTGGATACCC AGTCTATTGTGCGGGACCTGGCCCTTCGGGGGAACGTGCAGCTCTGTGGTCAGGGTTTCAGTCTCAAAGGCAGTCAGGCG GCCATTGAAGGGCATCAGGACTTCGCGGTGTTCCTGGCCCCCTGA
Upstream 100 bases:
>100_bases GCTGCCTTCTGCGCCAGCCACACAGGACAGACGCTGACATTTCACTGAAAATTGGCTAGTCTGCCCAAGATTATATGGCC ATGTTTTCTGAGGTGATGCT
Downstream 100 bases:
>100_bases TATTCTGCTGGCGCCCGTAAAAGGCCATGCATTACACTTCCGGGCCTATTGTGATGTTCGCAGTTTTTTGGGGATTTAAG AGGTAATGGTGCAACTGACA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 494; Mature: 494
Protein sequence:
>494_residues MQPGSLFTTVGCDNGRRTGAIGLVTYTLPGILVLLFGSGHWLWLPGMLLAALFGLSLMRRCRDAHRPRGYLVAALVPLPL WLLVLSMAGNAALGLILFALGLGITLLVSVLPSRPVKDYVDGYWSADMPAPEPLTPRREPTLGGEAPDDAFDSAWDDSDE EETEALGPWHTASSADHDTARAHGQPIKPQPHARFRQDTVQDYSATEQDKTAALAVFGMSATREQHLVIEANHGINVASR HSHDEPDQTIDARHSRDADPHHQDTPIWQQFTQRRAVTGMGDDDIADDTPPSGNETYDSEPEPRPLRSWSDAFNGDGSLE VLMEAIYLHLKNWWRFYLSGAAAVLFGVAVVAMGMRLSSAPEEIGSSATGSQGDALQASTRLESGLELALDNEALILSWH ANSRSNGIIWSLATAEGERHCASLLFNNGNRYRPMQVADEQGMRRARFSPLDTQSIVRDLALRGNVQLCGQGFSLKGSQA AIEGHQDFAVFLAP
Sequences:
>Translated_494_residues MQPGSLFTTVGCDNGRRTGAIGLVTYTLPGILVLLFGSGHWLWLPGMLLAALFGLSLMRRCRDAHRPRGYLVAALVPLPL WLLVLSMAGNAALGLILFALGLGITLLVSVLPSRPVKDYVDGYWSADMPAPEPLTPRREPTLGGEAPDDAFDSAWDDSDE EETEALGPWHTASSADHDTARAHGQPIKPQPHARFRQDTVQDYSATEQDKTAALAVFGMSATREQHLVIEANHGINVASR HSHDEPDQTIDARHSRDADPHHQDTPIWQQFTQRRAVTGMGDDDIADDTPPSGNETYDSEPEPRPLRSWSDAFNGDGSLE VLMEAIYLHLKNWWRFYLSGAAAVLFGVAVVAMGMRLSSAPEEIGSSATGSQGDALQASTRLESGLELALDNEALILSWH ANSRSNGIIWSLATAEGERHCASLLFNNGNRYRPMQVADEQGMRRARFSPLDTQSIVRDLALRGNVQLCGQGFSLKGSQA AIEGHQDFAVFLAP >Mature_494_residues MQPGSLFTTVGCDNGRRTGAIGLVTYTLPGILVLLFGSGHWLWLPGMLLAALFGLSLMRRCRDAHRPRGYLVAALVPLPL WLLVLSMAGNAALGLILFALGLGITLLVSVLPSRPVKDYVDGYWSADMPAPEPLTPRREPTLGGEAPDDAFDSAWDDSDE EETEALGPWHTASSADHDTARAHGQPIKPQPHARFRQDTVQDYSATEQDKTAALAVFGMSATREQHLVIEANHGINVASR HSHDEPDQTIDARHSRDADPHHQDTPIWQQFTQRRAVTGMGDDDIADDTPPSGNETYDSEPEPRPLRSWSDAFNGDGSLE VLMEAIYLHLKNWWRFYLSGAAAVLFGVAVVAMGMRLSSAPEEIGSSATGSQGDALQASTRLESGLELALDNEALILSWH ANSRSNGIIWSLATAEGERHCASLLFNNGNRYRPMQVADEQGMRRARFSPLDTQSIVRDLALRGNVQLCGQGFSLKGSQA AIEGHQDFAVFLAP
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 53786; Mature: 53786
Theoretical pI: Translated: 4.92; Mature: 4.92
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 3.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MQPGSLFTTVGCDNGRRTGAIGLVTYTLPGILVLLFGSGHWLWLPGMLLAALFGLSLMRR CCCCCEEEEECCCCCCCCCEEEEHHHHHHHHHHHHHCCCCEEHHHHHHHHHHHHHHHHHH CRDAHRPRGYLVAALVPLPLWLLVLSMAGNAALGLILFALGLGITLLVSVLPSRPVKDYV HHHHCCCCCEEHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHH DGYWSADMPAPEPLTPRREPTLGGEAPDDAFDSAWDDSDEEETEALGPWHTASSADHDTA CCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCHHHHHHCCCCCCCCCCCCCHH RAHGQPIKPQPHARFRQDTVQDYSATEQDKTAALAVFGMSATREQHLVIEANHGINVASR HHCCCCCCCCCCHHHHHHHHHHHCCCCCHHHHEEEEECCCCCCCCEEEEECCCCCCCCCC HSHDEPDQTIDARHSRDADPHHQDTPIWQQFTQRRAVTGMGDDDIADDTPPSGNETYDSE CCCCCCCHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC PEPRPLRSWSDAFNGDGSLEVLMEAIYLHLKNWWRFYLSGAAAVLFGVAVVAMGMRLSSA CCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC PEEIGSSATGSQGDALQASTRLESGLELALDNEALILSWHANSRSNGIIWSLATAEGERH HHHHCCCCCCCCCCHHHHHHHHHCCCEEEECCCEEEEEEECCCCCCCEEEEEECCCCHHH CASLLFNNGNRYRPMQVADEQGMRRARFSPLDTQSIVRDLALRGNVQLCGQGFSLKGSQA HHHHHHCCCCCCCCCCCCCHHHHHHHCCCCCCHHHHHHHHHHCCCEEEECCCCCCCCCHH AIEGHQDFAVFLAP HCCCCCCEEEEECC >Mature Secondary Structure MQPGSLFTTVGCDNGRRTGAIGLVTYTLPGILVLLFGSGHWLWLPGMLLAALFGLSLMRR CCCCCEEEEECCCCCCCCCEEEEHHHHHHHHHHHHHCCCCEEHHHHHHHHHHHHHHHHHH CRDAHRPRGYLVAALVPLPLWLLVLSMAGNAALGLILFALGLGITLLVSVLPSRPVKDYV HHHHCCCCCEEHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHH DGYWSADMPAPEPLTPRREPTLGGEAPDDAFDSAWDDSDEEETEALGPWHTASSADHDTA CCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCHHHHHHCCCCCCCCCCCCCHH RAHGQPIKPQPHARFRQDTVQDYSATEQDKTAALAVFGMSATREQHLVIEANHGINVASR HHCCCCCCCCCCHHHHHHHHHHHCCCCCHHHHEEEEECCCCCCCCEEEEECCCCCCCCCC HSHDEPDQTIDARHSRDADPHHQDTPIWQQFTQRRAVTGMGDDDIADDTPPSGNETYDSE CCCCCCCHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC PEPRPLRSWSDAFNGDGSLEVLMEAIYLHLKNWWRFYLSGAAAVLFGVAVVAMGMRLSSA CCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC PEEIGSSATGSQGDALQASTRLESGLELALDNEALILSWHANSRSNGIIWSLATAEGERH HHHHCCCCCCCCCCHHHHHHHHHCCCEEEECCCEEEEEEECCCCCCCEEEEEECCCCHHH CASLLFNNGNRYRPMQVADEQGMRRARFSPLDTQSIVRDLALRGNVQLCGQGFSLKGSQA HHHHHHCCCCCCCCCCCCCHHHHHHHCCCCCCHHHHHHHHHHCCCEEEECCCCCCCCCHH AIEGHQDFAVFLAP HCCCCCCEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA