| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
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The map label for this gene is 119773409
Identifier: 119773409
GI number: 119773409
Start: 307694
End: 308560
Strand: Direct
Name: 119773409
Synonym: Sama_0268
Alternate gene names: NA
Gene position: 307694-308560 (Clockwise)
Preceding gene: 119773408
Following gene: 119773410
Centisome position: 7.15
GC content: 57.55
Gene sequence:
>867_bases ATGGTGCAACTGACATTGGTGATACTTGCCGCAGGGCTTGGTAGCCGTTTTGGCGGTGATAAGCAGCTGGCCCGGCTTGG CCCCAGGGGCGAAACCATGTTGGAGTTGTCCATTCAAAGCGCCGTGAAGGCTGGCTTCACCCGTGCCGTACTGGTGATAC GCCCGGAGCTGGAGTCACAGCTTGCGGCGCAGTTGACCTCTCAGGTACCCACCGACTTTGAGATCCAGTTTTGTATTCAG GCCGCTGATGACCTGCCACTGCCCAAAGGGGAGGTCGCTGCGTTGCTTGAGTCGCGCACCAAACCCTGGGGCACAGCCCA CGCCCTTTACTGCGCCCGGCATCAACTCACGGGCCCTTTTGCGGTGATCACCGCCGATGATTTCTATGGCGATAACGCTT TTGCCTGCATGGCCGAAGGCCTTAAGCGTGGCGGCTGGCTGATGGTGGCGTACCCTTTGGAGGCCACCTTGTCGGAACAC GGCGGGGTAAACCGGGGGATATGTCAGGTAACCGATGGCTACCTCACCCGCGTAGAGGAATACAAAGAGATAGTTGCCAT TCAGGGTGGCCTAGAAGGGCGCTTTAAGGGCCAGCTCAGGCCTCTGGCGCCCGACGTGCCGGTATCCATGACTCTGTGGG GATTTGATGACAGCGTTGTCAGTTGGTTGAGGGACGCGTTAATATCCTTTCTTTTGGCATCGCCATCGCCTGGGGAGGAA TGTTATCTTCCCGATGTTGTGCAAGCCGGTATCGACCAGGGACTCAAGGTTCGGGTAGAAACCGCCCAGGGGGAATGGCT CGGGGTTACCTACGCAGATGATGTGCCCCGGGTAAGATCAAGATTGATGGAGTTATTGAGTGATTGA
Upstream 100 bases:
>100_bases TTCCTGGCCCCCTGATATTCTGCTGGCGCCCGTAAAAGGCCATGCATTACACTTCCGGGCCTATTGTGATGTTCGCAGTT TTTTGGGGATTTAAGAGGTA
Downstream 100 bases:
>100_bases AGTTATCCGGCAGCGGGTTCTGCCTCACTATGGATTGGAAGGCAATGCTGCAAAGGTTTCACCCCTGGGCAATGGGCACA TCAATGATACGTTTTTGGTG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 288; Mature: 288
Protein sequence:
>288_residues MVQLTLVILAAGLGSRFGGDKQLARLGPRGETMLELSIQSAVKAGFTRAVLVIRPELESQLAAQLTSQVPTDFEIQFCIQ AADDLPLPKGEVAALLESRTKPWGTAHALYCARHQLTGPFAVITADDFYGDNAFACMAEGLKRGGWLMVAYPLEATLSEH GGVNRGICQVTDGYLTRVEEYKEIVAIQGGLEGRFKGQLRPLAPDVPVSMTLWGFDDSVVSWLRDALISFLLASPSPGEE CYLPDVVQAGIDQGLKVRVETAQGEWLGVTYADDVPRVRSRLMELLSD
Sequences:
>Translated_288_residues MVQLTLVILAAGLGSRFGGDKQLARLGPRGETMLELSIQSAVKAGFTRAVLVIRPELESQLAAQLTSQVPTDFEIQFCIQ AADDLPLPKGEVAALLESRTKPWGTAHALYCARHQLTGPFAVITADDFYGDNAFACMAEGLKRGGWLMVAYPLEATLSEH GGVNRGICQVTDGYLTRVEEYKEIVAIQGGLEGRFKGQLRPLAPDVPVSMTLWGFDDSVVSWLRDALISFLLASPSPGEE CYLPDVVQAGIDQGLKVRVETAQGEWLGVTYADDVPRVRSRLMELLSD >Mature_288_residues MVQLTLVILAAGLGSRFGGDKQLARLGPRGETMLELSIQSAVKAGFTRAVLVIRPELESQLAAQLTSQVPTDFEIQFCIQ AADDLPLPKGEVAALLESRTKPWGTAHALYCARHQLTGPFAVITADDFYGDNAFACMAEGLKRGGWLMVAYPLEATLSEH GGVNRGICQVTDGYLTRVEEYKEIVAIQGGLEGRFKGQLRPLAPDVPVSMTLWGFDDSVVSWLRDALISFLLASPSPGEE CYLPDVVQAGIDQGLKVRVETAQGEWLGVTYADDVPRVRSRLMELLSD
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 31267; Mature: 31267
Theoretical pI: Translated: 4.56; Mature: 4.56
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.7 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 3.8 %Cys+Met (Translated Protein) 1.7 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 3.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MVQLTLVILAAGLGSRFGGDKQLARLGPRGETMLELSIQSAVKAGFTRAVLVIRPELESQ CEEEEEEEHHHHCCCCCCCCHHHHHCCCCCCEEEEHHHHHHHHCCCEEEEEEECCCHHHH LAAQLTSQVPTDFEIQFCIQAADDLPLPKGEVAALLESRTKPWGTAHALYCARHQLTGPF HHHHHHHHCCCCEEEEEEEECCCCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCE AVITADDFYGDNAFACMAEGLKRGGWLMVAYPLEATLSEHGGVNRGICQVTDGYLTRVEE EEEEECCCCCCCHHHHHHHHHCCCCEEEEEECHHHHHHHCCCCCCCEEEECHHHHHHHHH YKEIVAIQGGLEGRFKGQLRPLAPDVPVSMTLWGFDDSVVSWLRDALISFLLASPSPGEE HHHHHHHCCCCCCEECCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHCCCCCCCC CYLPDVVQAGIDQGLKVRVETAQGEWLGVTYADDVPRVRSRLMELLSD CCCHHHHHHCCCCCCEEEEEECCCCEEEEEECCCCHHHHHHHHHHHCC >Mature Secondary Structure MVQLTLVILAAGLGSRFGGDKQLARLGPRGETMLELSIQSAVKAGFTRAVLVIRPELESQ CEEEEEEEHHHHCCCCCCCCHHHHHCCCCCCEEEEHHHHHHHHCCCEEEEEEECCCHHHH LAAQLTSQVPTDFEIQFCIQAADDLPLPKGEVAALLESRTKPWGTAHALYCARHQLTGPF HHHHHHHHCCCCEEEEEEEECCCCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCE AVITADDFYGDNAFACMAEGLKRGGWLMVAYPLEATLSEHGGVNRGICQVTDGYLTRVEE EEEEECCCCCCCHHHHHHHHHCCCCEEEEEECHHHHHHHCCCCCCCEEEECHHHHHHHHH YKEIVAIQGGLEGRFKGQLRPLAPDVPVSMTLWGFDDSVVSWLRDALISFLLASPSPGEE HHHHHHHCCCCCCEECCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHCCCCCCCC CYLPDVVQAGIDQGLKVRVETAQGEWLGVTYADDVPRVRSRLMELLSD CCCHHHHHHCCCCCCEEEEEECCCCEEEEEECCCCHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA