Click here to switch to the map view.

The map label for this gene is tsf

Identifier: 119717466

GI number: 119717466

Start: 3444146

End: 3444958

Strand: Reverse

Name: tsf

Synonym: Noca_3242

Alternate gene names: 119717466

Gene position: 3444958-3444146 (Counterclockwise)

Preceding gene: 119717467

Following gene: 119717465

Centisome position: 69.09

GC content: 69.86

Gene sequence:

>813_bases
ATGGCGAACATCTCCGCCGCCGACGTCAAGAAGCTCCGTGAGCTCACCGGCGCCGGCATGATGGACTGCAAGAAGGCGCT
CGAGGAGGCCGACGGCGACTTCGAGAAGGCCGCCGAGCTGATCCGCATCAAGCTCGGCAAGAAGATGGCCGAGCGCGGTG
CCGAGCGCGAGGCCTCGAACGGCCTGGTCGCCACCTCCGGTGGCGCCCTGGTCGAGCTCAACTGCGAGACCGACTTCGTC
GCCAAGGGTGACGACTTCGTCGCCGCCGCCCAGCAGATCGCCGACGCGGCCGACGAGGCCAAGGCCGGCGACGTGGAGGC
CCTCAAGGCTGTCCGGCTCGGCGACAAGACCGTCGGCGAGGTCGTCGAGAACCTCGCGATCACCATCGGCGAGAAGATCG
AGCTCGGCCGGGTGGCCTACTTCGACGGCCCGGTCGTGGCCTACATGCACAAGCGTGCGGCCGACCTGCCGCCCGCGGTC
GGCGTGCTCGTCGAGTACGACGGCGCCGAGGCCGGCGCCCGGGGTGCCGCGATGCAGATCGCGGCCATGCGGCCGCAGTA
CCTCACCCGCGAGGAGGTCCCCGGGGACCGGGTCGCCAAGGAGCGGGAGATCGCCGAGGCGACCTCTCGTGAGGAGGGCA
AGCCCGAGCAGGCGATCGCCAAGATCACCGAGGGCCGGCTCAACGGGTTCTTCAAGGACGTCGTGCTGCTCGAGCAGCCG
TCGGTCACCGAGAGCAAGAAGAGCGTCAAGGCCGTCCTGGACGAGGCCGGCACCACCGTGAAGCGGTTCGCCCGTTTCGA
GGTCGGCGCGTGA

Upstream 100 bases:

>100_bases
TGCCACCGAGCAGCCGGCCGCCGACGCCGAGGCCTGATCGGGCCCCGCCCGCTGCCGCAGCACTGACGACAACCTGCCGA
CACTTCGAGGAAGAAGGACC

Downstream 100 bases:

>100_bases
GCAGATAGGTTCTAGCCCAGACCAATCGAGGAGGCCGGTTCGATGACAGCGACCCTGATCATCGGACCGGCCTTCTCGCT
TCCTGCCCCACGAAGGAGCC

Product: translation elongation factor Ts (EF-Ts)

Products: NA

Alternate protein names: EF-Ts

Number of amino acids: Translated: 270; Mature: 269

Protein sequence:

>270_residues
MANISAADVKKLRELTGAGMMDCKKALEEADGDFEKAAELIRIKLGKKMAERGAEREASNGLVATSGGALVELNCETDFV
AKGDDFVAAAQQIADAADEAKAGDVEALKAVRLGDKTVGEVVENLAITIGEKIELGRVAYFDGPVVAYMHKRAADLPPAV
GVLVEYDGAEAGARGAAMQIAAMRPQYLTREEVPGDRVAKEREIAEATSREEGKPEQAIAKITEGRLNGFFKDVVLLEQP
SVTESKKSVKAVLDEAGTTVKRFARFEVGA

Sequences:

>Translated_270_residues
MANISAADVKKLRELTGAGMMDCKKALEEADGDFEKAAELIRIKLGKKMAERGAEREASNGLVATSGGALVELNCETDFV
AKGDDFVAAAQQIADAADEAKAGDVEALKAVRLGDKTVGEVVENLAITIGEKIELGRVAYFDGPVVAYMHKRAADLPPAV
GVLVEYDGAEAGARGAAMQIAAMRPQYLTREEVPGDRVAKEREIAEATSREEGKPEQAIAKITEGRLNGFFKDVVLLEQP
SVTESKKSVKAVLDEAGTTVKRFARFEVGA
>Mature_269_residues
ANISAADVKKLRELTGAGMMDCKKALEEADGDFEKAAELIRIKLGKKMAERGAEREASNGLVATSGGALVELNCETDFVA
KGDDFVAAAQQIADAADEAKAGDVEALKAVRLGDKTVGEVVENLAITIGEKIELGRVAYFDGPVVAYMHKRAADLPPAVG
VLVEYDGAEAGARGAAMQIAAMRPQYLTREEVPGDRVAKEREIAEATSREEGKPEQAIAKITEGRLNGFFKDVVLLEQPS
VTESKKSVKAVLDEAGTTVKRFARFEVGA

Specific function: Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome

COG id: COG0264

COG function: function code J; Translation elongation factor Ts

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the EF-Ts family

Homologues:

Organism=Escherichia coli, GI1786366, Length=275, Percent_Identity=41.4545454545455, Blast_Score=160, Evalue=6e-41,
Organism=Drosophila melanogaster, GI19921466, Length=287, Percent_Identity=26.8292682926829, Blast_Score=69, Evalue=4e-12,

Paralogues:

None

Copy number: 2670 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 1100 Molecules/Cell In: Stationary-Phase, Rich-Media (Based on E. coli). 4173 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. 14563 Molecules/Cell In: Growth Phase, Gluco

Swissprot (AC and ID): EFTS_NOCSJ (A1SLQ9)

Other databases:

- EMBL:   CP000509
- RefSeq:   YP_924431.1
- ProteinModelPortal:   A1SLQ9
- SMR:   A1SLQ9
- STRING:   A1SLQ9
- GeneID:   4599180
- GenomeReviews:   CP000509_GR
- KEGG:   nca:Noca_3242
- eggNOG:   COG0264
- HOGENOM:   HBG713289
- OMA:   YLHGTRI
- BioCyc:   NSP35761:NOCA_3242-MONOMER
- GO:   GO:0005737
- HAMAP:   MF_00050
- InterPro:   IPR001816
- InterPro:   IPR014039
- InterPro:   IPR018101
- InterPro:   IPR009060
- InterPro:   IPR000449
- Gene3D:   G3DSA:3.30.479.20
- PANTHER:   PTHR11741
- TIGRFAMs:   TIGR00116

Pfam domain/function: PF00889 EF_TS; PF00627 UBA; SSF54713 EF_TS; SSF46934 UBA_like

EC number: NA

Molecular weight: Translated: 28698; Mature: 28567

Theoretical pI: Translated: 4.68; Mature: 4.68

Prosite motif: PS01126 EF_TS_1; PS01127 EF_TS_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MANISAADVKKLRELTGAGMMDCKKALEEADGDFEKAAELIRIKLGKKMAERGAEREASN
CCCCCHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCHHHHCC
GLVATSGGALVELNCETDFVAKGDDFVAAAQQIADAADEAKAGDVEALKAVRLGDKTVGE
CEEEECCCEEEEEECCCCEEECCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHH
VVENLAITIGEKIELGRVAYFDGPVVAYMHKRAADLPPAVGVLVEYDGAEAGARGAAMQI
HHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCHHHHH
AAMRPQYLTREEVPGDRVAKEREIAEATSREEGKPEQAIAKITEGRLNGFFKDVVLLEQP
HHHCCHHHHHHCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHEECCC
SVTESKKSVKAVLDEAGTTVKRFARFEVGA
CCCHHHHHHHHHHHHHCHHHHHHHHHCCCC
>Mature Secondary Structure 
ANISAADVKKLRELTGAGMMDCKKALEEADGDFEKAAELIRIKLGKKMAERGAEREASN
CCCCHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCHHHHCC
GLVATSGGALVELNCETDFVAKGDDFVAAAQQIADAADEAKAGDVEALKAVRLGDKTVGE
CEEEECCCEEEEEECCCCEEECCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHH
VVENLAITIGEKIELGRVAYFDGPVVAYMHKRAADLPPAVGVLVEYDGAEAGARGAAMQI
HHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCHHHHH
AAMRPQYLTREEVPGDRVAKEREIAEATSREEGKPEQAIAKITEGRLNGFFKDVVLLEQP
HHHCCHHHHHHCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHEECCC
SVTESKKSVKAVLDEAGTTVKRFARFEVGA
CCCHHHHHHHHHHHHHCHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA