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The map label for this gene is ydcV [H]

Identifier: 119717438

GI number: 119717438

Start: 3412360

End: 3413196

Strand: Reverse

Name: ydcV [H]

Synonym: Noca_3214

Alternate gene names: 119717438

Gene position: 3413196-3412360 (Counterclockwise)

Preceding gene: 119717439

Following gene: 119717437

Centisome position: 68.46

GC content: 68.7

Gene sequence:

>837_bases
ATGGGCCGGCCCTCGAGCACGTCGATGGCGATGTCCCGTGGCCTGCGCCGCTCGCTCGCGGGCTTCACAGCCGTGGTGCT
GGCGATCGTCTACATCCCGCTGCTGCTGGTTCTGGTCAACTCCTTCAACAGTGACAACACCTTCGGCTGGCCGCCGCCGA
GCCTCACGCTGCACTGGTGGAAGGTGGCCGCGGAGAGCACGGGCGCCCGGGAGGCGCTCTTCACCAGCATCCAGGTGGCG
CTGGTCGCGACCACGATCGCGCTGGTGCTCGGAACGCTCGCGGCGATGGGGCTGCGGCGGACCCGCTTCTTCGGCCGCAA
CGTCGTGTCGCTGCTGATCATCCTGCCGATCGCGCTGCCGGGGATCGTGACCGGCCTGGCGTTCCAGAACGGCTTCCGCA
CCATCTTCGGGATCCAGCTGAGCATCTGGACGATCGTGATCGCGCACGCGACGTTCTGCATCGTCACCGTGTTCAACAAC
GTGCAGGCCCGCTTCCAGCGGCTCGGGACGAACTTCGAGCAGGCCTCGATGGACCTGGGCGCCGGGCGGTGGACGACGTT
CCGGCTGGTCACGTTCCCGATGCTGCGCTCGGCGCTGCTCGCCGGCGGGCTGCTGTCCTTCGGGCTCTCCTTCGACGAGA
TCGTGGTGACGACGTTCACCTCGAGCCCCCAGGACCAGACCCTGCCGATCTGGATCCTGCAGAACCTGTTCCGGCCCAAC
CAGGCGCCGATCGTGAACGTCGTGGCCGCCGTGCTGGTGCTCGCCTCGGCGGTCCCGATCTACCTCGCCCAGCGGCTCTC
CGGCTCGACCGCGGAGGGGCTGACCGGCGCCAGGTGA

Upstream 100 bases:

>100_bases
ACAACCTGCCGTTCGCCGCAGCGGTGGCGACGGTGCCGATCGTCGTGATGCTCGCCTACCTCGCCGCCGTCCGCCGTACC
GGCGCGCTGGAGAACCTGTG

Downstream 100 bases:

>100_bases
GCGCTAGGTGACGCGTGCTCGCCGGTCCACCTACGGTGGGCCGGTGAGCGAGAAGGCGGGGGTATCTCGGGACGGACGGC
GACGAGCGCTGCTCGTCGGC

Product: binding-protein-dependent transport systems inner membrane component

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 278; Mature: 277

Protein sequence:

>278_residues
MGRPSSTSMAMSRGLRRSLAGFTAVVLAIVYIPLLLVLVNSFNSDNTFGWPPPSLTLHWWKVAAESTGAREALFTSIQVA
LVATTIALVLGTLAAMGLRRTRFFGRNVVSLLIILPIALPGIVTGLAFQNGFRTIFGIQLSIWTIVIAHATFCIVTVFNN
VQARFQRLGTNFEQASMDLGAGRWTTFRLVTFPMLRSALLAGGLLSFGLSFDEIVVTTFTSSPQDQTLPIWILQNLFRPN
QAPIVNVVAAVLVLASAVPIYLAQRLSGSTAEGLTGAR

Sequences:

>Translated_278_residues
MGRPSSTSMAMSRGLRRSLAGFTAVVLAIVYIPLLLVLVNSFNSDNTFGWPPPSLTLHWWKVAAESTGAREALFTSIQVA
LVATTIALVLGTLAAMGLRRTRFFGRNVVSLLIILPIALPGIVTGLAFQNGFRTIFGIQLSIWTIVIAHATFCIVTVFNN
VQARFQRLGTNFEQASMDLGAGRWTTFRLVTFPMLRSALLAGGLLSFGLSFDEIVVTTFTSSPQDQTLPIWILQNLFRPN
QAPIVNVVAAVLVLASAVPIYLAQRLSGSTAEGLTGAR
>Mature_277_residues
GRPSSTSMAMSRGLRRSLAGFTAVVLAIVYIPLLLVLVNSFNSDNTFGWPPPSLTLHWWKVAAESTGAREALFTSIQVAL
VATTIALVLGTLAAMGLRRTRFFGRNVVSLLIILPIALPGIVTGLAFQNGFRTIFGIQLSIWTIVIAHATFCIVTVFNNV
QARFQRLGTNFEQASMDLGAGRWTTFRLVTFPMLRSALLAGGLLSFGLSFDEIVVTTFTSSPQDQTLPIWILQNLFRPNQ
APIVNVVAAVLVLASAVPIYLAQRLSGSTAEGLTGAR

Specific function: Probably part of the binding-protein-dependent transport system ydcSTUV; probably responsible for the translocation of the substrate across the membrane [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787714, Length=260, Percent_Identity=51.5384615384615, Blast_Score=189, Evalue=2e-49,
Organism=Escherichia coli, GI1787368, Length=256, Percent_Identity=32.03125, Blast_Score=121, Evalue=4e-29,
Organism=Escherichia coli, GI1787081, Length=262, Percent_Identity=31.6793893129771, Blast_Score=100, Evalue=1e-22,
Organism=Escherichia coli, GI1788764, Length=186, Percent_Identity=34.9462365591398, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1787080, Length=210, Percent_Identity=25.7142857142857, Blast_Score=61, Evalue=9e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 30011; Mature: 29879

Theoretical pI: Translated: 12.09; Mature: 12.09

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGRPSSTSMAMSRGLRRSLAGFTAVVLAIVYIPLLLVLVNSFNSDNTFGWPPPSLTLHWW
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEHHH
KVAAESTGAREALFTSIQVALVATTIALVLGTLAAMGLRRTRFFGRNVVSLLIILPIALP
HHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GIVTGLAFQNGFRTIFGIQLSIWTIVIAHATFCIVTVFNNVQARFQRLGTNFEQASMDLG
HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCC
AGRWTTFRLVTFPMLRSALLAGGLLSFGLSFDEIVVTTFTSSPQDQTLPIWILQNLFRPN
CCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHEEEEEECCCCCCCCCHHHHHHHHHCCC
QAPIVNVVAAVLVLASAVPIYLAQRLSGSTAEGLTGAR
CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
>Mature Secondary Structure 
GRPSSTSMAMSRGLRRSLAGFTAVVLAIVYIPLLLVLVNSFNSDNTFGWPPPSLTLHWW
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEHHH
KVAAESTGAREALFTSIQVALVATTIALVLGTLAAMGLRRTRFFGRNVVSLLIILPIALP
HHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GIVTGLAFQNGFRTIFGIQLSIWTIVIAHATFCIVTVFNNVQARFQRLGTNFEQASMDLG
HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCC
AGRWTTFRLVTFPMLRSALLAGGLLSFGLSFDEIVVTTFTSSPQDQTLPIWILQNLFRPN
CCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHEEEEEECCCCCCCCCHHHHHHHHHCCC
QAPIVNVVAAVLVLASAVPIYLAQRLSGSTAEGLTGAR
CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]