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The map label for this gene is ydcU [H]

Identifier: 119717439

GI number: 119717439

Start: 3413196

End: 3414044

Strand: Reverse

Name: ydcU [H]

Synonym: Noca_3215

Alternate gene names: 119717439

Gene position: 3414044-3413196 (Counterclockwise)

Preceding gene: 119717440

Following gene: 119717438

Centisome position: 68.47

GC content: 69.14

Gene sequence:

>849_bases
TTGACCGTCCTCGACCGTCGCCCGGGCCTCCGGGTGGGCCTGCTCCTGACGCCACCGATGCTGTGGCTGGGAGTGGCCTA
CCTGGGGGCCCTGGCGGCTCTCCTCATCGCCTCGCTGTGGACCCAGAACGACTTCACCGGCCACATCGAGCGCTCGTGGA
CCCTGGAGAACTTCAAGACCCTCTTCACGGTCGACGTCTACCGGACGATCACCTTGCGCACGATCGGCATCGCGGCGCTG
GTGACCGTCGTCGACGCGCTGCTGGCGTTCCCGATCGCGCTGTACATGGCCAAGGTCGCCTCACCACGGATGCAGCGGAT
CCTGGTGATCTCGGTGCTGACGCCGCTGTGGGCGTCGTACCTGGTGAAGGCCTACGCGTGGCGCGGCATGCTCTCCGCGG
ACGGCCCGATCGCCTGGATCGCCGCGCCGTTCGGGCTGCACACGCCGGGCTACGGCCTGCCCGGCGTGATCATCACGCTC
GCCTACCTGTGGCTGCCCTACATGATCCTGCCGGTGTACGCCGGGCTCGAGCGGCTGCCCGACTCGCTCTTCGAGGCGTC
CGCGGACCTGGGCGCCGGCGCCTGGACGACCCTGCGCCGGGTGGTGGTCCCGATGGCCTTCCCGGCGATCGTCGCGGGCT
CGATCTTCACGTTCTCGCTGTCGATGGGCGACTACATCGCGGTCAAGATCGTGGGCGGCACCAGCCAACTGCTCGGCAAC
GTCGTCTACGACAACCAGGGCGCGGCCAACAACCTGCCGTTCGCCGCAGCGGTGGCGACGGTGCCGATCGTCGTGATGCT
CGCCTACCTCGCCGCCGTCCGCCGTACCGGCGCGCTGGAGAACCTGTGA

Upstream 100 bases:

>100_bases
TGGACCACGCCGATCGAGCAGTGCCTGGACGGCCGCACGGACGTGACGTGCACCGACTACGGCCAGTGGACCACCGCGTG
GACCGAGATCAAGGGGTGAG

Downstream 100 bases:

>100_bases
TGGGCCGGCCCTCGAGCACGTCGATGGCGATGTCCCGTGGCCTGCGCCGCTCGCTCGCGGGCTTCACAGCCGTGGTGCTG
GCGATCGTCTACATCCCGCT

Product: binding-protein-dependent transport systems inner membrane component

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 282; Mature: 281

Protein sequence:

>282_residues
MTVLDRRPGLRVGLLLTPPMLWLGVAYLGALAALLIASLWTQNDFTGHIERSWTLENFKTLFTVDVYRTITLRTIGIAAL
VTVVDALLAFPIALYMAKVASPRMQRILVISVLTPLWASYLVKAYAWRGMLSADGPIAWIAAPFGLHTPGYGLPGVIITL
AYLWLPYMILPVYAGLERLPDSLFEASADLGAGAWTTLRRVVVPMAFPAIVAGSIFTFSLSMGDYIAVKIVGGTSQLLGN
VVYDNQGAANNLPFAAAVATVPIVVMLAYLAAVRRTGALENL

Sequences:

>Translated_282_residues
MTVLDRRPGLRVGLLLTPPMLWLGVAYLGALAALLIASLWTQNDFTGHIERSWTLENFKTLFTVDVYRTITLRTIGIAAL
VTVVDALLAFPIALYMAKVASPRMQRILVISVLTPLWASYLVKAYAWRGMLSADGPIAWIAAPFGLHTPGYGLPGVIITL
AYLWLPYMILPVYAGLERLPDSLFEASADLGAGAWTTLRRVVVPMAFPAIVAGSIFTFSLSMGDYIAVKIVGGTSQLLGN
VVYDNQGAANNLPFAAAVATVPIVVMLAYLAAVRRTGALENL
>Mature_281_residues
TVLDRRPGLRVGLLLTPPMLWLGVAYLGALAALLIASLWTQNDFTGHIERSWTLENFKTLFTVDVYRTITLRTIGIAALV
TVVDALLAFPIALYMAKVASPRMQRILVISVLTPLWASYLVKAYAWRGMLSADGPIAWIAAPFGLHTPGYGLPGVIITLA
YLWLPYMILPVYAGLERLPDSLFEASADLGAGAWTTLRRVVVPMAFPAIVAGSIFTFSLSMGDYIAVKIVGGTSQLLGNV
VYDNQGAANNLPFAAAVATVPIVVMLAYLAAVRRTGALENL

Specific function: Probably part of the binding-protein-dependent transport system ydcSTUV; probably responsible for the translocation of the substrate across the membrane [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787713, Length=277, Percent_Identity=45.8483754512635, Blast_Score=223, Evalue=9e-60,
Organism=Escherichia coli, GI1787369, Length=250, Percent_Identity=28.8, Blast_Score=105, Evalue=2e-24,
Organism=Escherichia coli, GI1787080, Length=230, Percent_Identity=31.304347826087, Blast_Score=103, Evalue=1e-23,
Organism=Escherichia coli, GI1787368, Length=71, Percent_Identity=39.4366197183099, Blast_Score=62, Evalue=4e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 30409; Mature: 30278

Theoretical pI: Translated: 9.59; Mature: 9.59

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTVLDRRPGLRVGLLLTPPMLWLGVAYLGALAALLIASLWTQNDFTGHIERSWTLENFKT
CCCCCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEHHHHHH
LFTVDVYRTITLRTIGIAALVTVVDALLAFPIALYMAKVASPRMQRILVISVLTPLWASY
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
LVKAYAWRGMLSADGPIAWIAAPFGLHTPGYGLPGVIITLAYLWLPYMILPVYAGLERLP
HHHHHHHCCCCCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC
DSLFEASADLGAGAWTTLRRVVVPMAFPAIVAGSIFTFSLSMGDYIAVKIVGGTSQLLGN
HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCEEEEEEECCHHHHHHH
VVYDNQGAANNLPFAAAVATVPIVVMLAYLAAVRRTGALENL
HHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure 
TVLDRRPGLRVGLLLTPPMLWLGVAYLGALAALLIASLWTQNDFTGHIERSWTLENFKT
CCCCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEHHHHHH
LFTVDVYRTITLRTIGIAALVTVVDALLAFPIALYMAKVASPRMQRILVISVLTPLWASY
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
LVKAYAWRGMLSADGPIAWIAAPFGLHTPGYGLPGVIITLAYLWLPYMILPVYAGLERLP
HHHHHHHCCCCCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC
DSLFEASADLGAGAWTTLRRVVVPMAFPAIVAGSIFTFSLSMGDYIAVKIVGGTSQLLGN
HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCEEEEEEECCHHHHHHH
VVYDNQGAANNLPFAAAVATVPIVVMLAYLAAVRRTGALENL
HHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]