Click here to switch to the map view.

The map label for this gene is ctaF [H]

Identifier: 119717363

GI number: 119717363

Start: 3342034

End: 3342432

Strand: Reverse

Name: ctaF [H]

Synonym: Noca_3139

Alternate gene names: 119717363

Gene position: 3342432-3342034 (Counterclockwise)

Preceding gene: 119717364

Following gene: 119717362

Centisome position: 67.04

GC content: 68.17

Gene sequence:

>399_bases
ATGAAGTCCGAGGCCTGGATCTTCGGGATCGTCACCATCTTCTTCGGGCTGATCAGCCCGGCGTACTGGTTCATGTCCTC
GGACTGGACCGGCACGTCCGCGCTGACCATGACGGCGCTGCTGGCCGGCATGGTGACGCTCTACCTGGGCTTCCACGCGA
AGAAGATGGACCCCCGCCCGGAGGACCGCAAGGACGGCGAGATCGCCGACGGCGCGGGCGAGCTGGGGTTCTTCCCGCCG
TACTCCTGGTGGCCGCTGTGGTGCGCGCTGACCCTGGGGATCATCGTGTACGCCGTCGCGCTGGCCGCCTGGTGGCTGGT
GATCATCGGCGTGGTGCTCGGCGCGGTGGCGCTCAGCGGCTGGATCTTCGAGTACTACCGCGGGGCGCACGCCCACTGA

Upstream 100 bases:

>100_bases
ACGAGGCCGCCCGGGTGGGCGCACCTGCCGACGCACCTGACATGGAGGGCCGCGAGGAGATGCTCCGCGACCGCAACACC
GACCCGGAGGGCAACGCCTG

Downstream 100 bases:

>100_bases
CCGCTGCGCGCCGAATCGGTGCGGTGGGGACCGGCGGTTAGGCTGGTTGTCGGACCACACGCACGCTCGTCACGGGGAGT
TCCAGCATGTCCCAGAGTCG

Product: hypothetical protein

Products: NA

Alternate protein names: Cytochrome aa3 subunit 4; Cytochrome c oxidase polypeptide IV [H]

Number of amino acids: Translated: 132; Mature: 132

Protein sequence:

>132_residues
MKSEAWIFGIVTIFFGLISPAYWFMSSDWTGTSALTMTALLAGMVTLYLGFHAKKMDPRPEDRKDGEIADGAGELGFFPP
YSWWPLWCALTLGIIVYAVALAAWWLVIIGVVLGAVALSGWIFEYYRGAHAH

Sequences:

>Translated_132_residues
MKSEAWIFGIVTIFFGLISPAYWFMSSDWTGTSALTMTALLAGMVTLYLGFHAKKMDPRPEDRKDGEIADGAGELGFFPP
YSWWPLWCALTLGIIVYAVALAAWWLVIIGVVLGAVALSGWIFEYYRGAHAH
>Mature_132_residues
MKSEAWIFGIVTIFFGLISPAYWFMSSDWTGTSALTMTALLAGMVTLYLGFHAKKMDPRPEDRKDGEIADGAGELGFFPP
YSWWPLWCALTLGIIVYAVALAAWWLVIIGVVLGAVALSGWIFEYYRGAHAH

Specific function: Part of cytochrome c oxidase, its function is unknown [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the cytochrome c oxidase bacterial subunit CtaF family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR021050 [H]

Pfam domain/function: PF12270 Cyt_c_ox_IV [H]

EC number: =1.9.3.1 [H]

Molecular weight: Translated: 14639; Mature: 14639

Theoretical pI: Translated: 5.54; Mature: 5.54

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKSEAWIFGIVTIFFGLISPAYWFMSSDWTGTSALTMTALLAGMVTLYLGFHAKKMDPRP
CCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
EDRKDGEIADGAGELGFFPPYSWWPLWCALTLGIIVYAVALAAWWLVIIGVVLGAVALSG
CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
WIFEYYRGAHAH
HHHHHHHCCCCC
>Mature Secondary Structure
MKSEAWIFGIVTIFFGLISPAYWFMSSDWTGTSALTMTALLAGMVTLYLGFHAKKMDPRP
CCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
EDRKDGEIADGAGELGFFPPYSWWPLWCALTLGIIVYAVALAAWWLVIIGVVLGAVALSG
CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
WIFEYYRGAHAH
HHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA