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The map label for this gene is yhfN [H]

Identifier: 119717346

GI number: 119717346

Start: 3325140

End: 3326375

Strand: Reverse

Name: yhfN [H]

Synonym: Noca_3122

Alternate gene names: 119717346

Gene position: 3326375-3325140 (Counterclockwise)

Preceding gene: 119717347

Following gene: 119717336

Centisome position: 66.72

GC content: 75.16

Gene sequence:

>1236_bases
GTGAGCACCCCGCCCGAGCGCCGCGTCGCGCTGATCGTCGCCGTGCTGGGCGCCCTGGCGTTCGTCGCGCTCGCCGTCGT
GCTGGTGCCGTGGCACCCGGTGCCCGGCGGCACGCCGGGGCCGGCGGACGCCGGGTCGGTCTTCACGACCGCGGAGATCC
AGCGGGCCGAGGACTTCTCCCGGTGGGCGCGGGTCTGGAGCCGGAGCTCGCTGGTGGTCTCCGTGCTGGTGGCCTGCACG
CTCGGCTTCGGGCCCTGGGGCCGACGGCTGGCCGCCCGGCTGCGCGGCTGGTGGTGGGTCCGGGTGGTGCTGGCGGTCGC
CGTGCTGGCGGTGGTCGGACGGGTGCTGACCCTGCCGTTCACCGTGCTGCTGCGCCGCGAGGTGCTCGACCGTGGGCTGA
GCCACCAGGCCTGGTCGGCGTTCGCGCTGGACCTGGTCAAGAACGAGCTGGTCGGGATCGTCGCGACCTCGATCGTGCTG
CTGGTCCTGGTCGGGTGCGCCCGCCGCTGGCGCTGCGCCTGGCCGGCGGTGGCCGGCGGCGTGCTGGGCGTGCTGGTGCT
GGCCGGGTCGTTCGTCTACCCGGTGGTCGTGGAGCCGTTGTTCAACTCGTTCACCTCGCTCGAGGCGGGTCCGCTGCGCA
CCCAGGTGCTCGCGCTCGCCGACCGCGAGCACGTCCCGGTCGACGACGTGCTCGTCGCGGACGCCTCCCGGCGGACGACG
ACCCTCAACGCCTACGTCTCGGGCTTCGGCGGGACCCGGCGGGTGGTGCTCTACGACAACCTGGTCGAGGACGTGCCGCG
CGACCAGGCGCTGTCGGTGGTGGCCCACGAGCTCGCGCACGCCCGCCACGACGACGTGCTGACCGGGTCGCTGCTGGGGG
TGGCCGGGGCGGTGTTCGGCGTCGGCCTGCTCGGGCTGCTCGTCGGCGCCGTCGGCCGCCGCGGCCTGGTGATGGGCGAC
CCGGTCGTGGTGCCGCTGGTGCTCGCGCTGGTCGCGCTGGGCACGGTGCTGGCCACCCCGGTTGAGAACGGGATCAGCCG
GCAGATCGAGACCCGCGCCGACGTCGACGCCCTGGAGGCGACCCACGACGCGGGCGCGTTCATCGGCGTCCAGCGCCAGC
TCGCGCTGCACTCGCTGGCCGACCCCACGCCCCCGGGCTGGTCGCAGTGGTGGTTCGGCTCGCACCCCACGACGCTGACC
CGGATCGCCATCGCCCGTCAGCTCGCGGGGGAGTAG

Upstream 100 bases:

>100_bases
TCGGGGCGGCGCTGGAGTCGGCGTTCGGCATCAGCCTGCGCGAGCTCACCCAGCAGTGGCGCGACGAGCTGTCCGACCTG
GCCCTGTCAGAATCGGCGGG

Downstream 100 bases:

>100_bases
CCCTGAGCACGAAAGTGGCCGCGGACCTCACGGTCCGCGGCCACCCAGCTCTAGTGCAAAGTCAGCACTGTGCGGTTGTC
TTCGCCTCGACGCTCGTGCA

Product: peptidase M48, Ste24p

Products: NA

Alternate protein names: PSP23 [H]

Number of amino acids: Translated: 411; Mature: 410

Protein sequence:

>411_residues
MSTPPERRVALIVAVLGALAFVALAVVLVPWHPVPGGTPGPADAGSVFTTAEIQRAEDFSRWARVWSRSSLVVSVLVACT
LGFGPWGRRLAARLRGWWWVRVVLAVAVLAVVGRVLTLPFTVLLRREVLDRGLSHQAWSAFALDLVKNELVGIVATSIVL
LVLVGCARRWRCAWPAVAGGVLGVLVLAGSFVYPVVVEPLFNSFTSLEAGPLRTQVLALADREHVPVDDVLVADASRRTT
TLNAYVSGFGGTRRVVLYDNLVEDVPRDQALSVVAHELAHARHDDVLTGSLLGVAGAVFGVGLLGLLVGAVGRRGLVMGD
PVVVPLVLALVALGTVLATPVENGISRQIETRADVDALEATHDAGAFIGVQRQLALHSLADPTPPGWSQWWFGSHPTTLT
RIAIARQLAGE

Sequences:

>Translated_411_residues
MSTPPERRVALIVAVLGALAFVALAVVLVPWHPVPGGTPGPADAGSVFTTAEIQRAEDFSRWARVWSRSSLVVSVLVACT
LGFGPWGRRLAARLRGWWWVRVVLAVAVLAVVGRVLTLPFTVLLRREVLDRGLSHQAWSAFALDLVKNELVGIVATSIVL
LVLVGCARRWRCAWPAVAGGVLGVLVLAGSFVYPVVVEPLFNSFTSLEAGPLRTQVLALADREHVPVDDVLVADASRRTT
TLNAYVSGFGGTRRVVLYDNLVEDVPRDQALSVVAHELAHARHDDVLTGSLLGVAGAVFGVGLLGLLVGAVGRRGLVMGD
PVVVPLVLALVALGTVLATPVENGISRQIETRADVDALEATHDAGAFIGVQRQLALHSLADPTPPGWSQWWFGSHPTTLT
RIAIARQLAGE
>Mature_410_residues
STPPERRVALIVAVLGALAFVALAVVLVPWHPVPGGTPGPADAGSVFTTAEIQRAEDFSRWARVWSRSSLVVSVLVACTL
GFGPWGRRLAARLRGWWWVRVVLAVAVLAVVGRVLTLPFTVLLRREVLDRGLSHQAWSAFALDLVKNELVGIVATSIVLL
VLVGCARRWRCAWPAVAGGVLGVLVLAGSFVYPVVVEPLFNSFTSLEAGPLRTQVLALADREHVPVDDVLVADASRRTTT
LNAYVSGFGGTRRVVLYDNLVEDVPRDQALSVVAHELAHARHDDVLTGSLLGVAGAVFGVGLLGLLVGAVGRRGLVMGDP
VVVPLVLALVALGTVLATPVENGISRQIETRADVDALEATHDAGAFIGVQRQLALHSLADPTPPGWSQWWFGSHPTTLTR
IAIARQLAGE

Specific function: Unknown

COG id: COG0501

COG function: function code O; Zn-dependent protease with chaperone function

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase M48B family [H]

Homologues:

Organism=Caenorhabditis elegans, GI17505484, Length=357, Percent_Identity=23.249299719888, Blast_Score=77, Evalue=2e-14,
Organism=Saccharomyces cerevisiae, GI6322577, Length=245, Percent_Identity=28.1632653061224, Blast_Score=88, Evalue=2e-18,
Organism=Drosophila melanogaster, GI19922414, Length=342, Percent_Identity=26.9005847953216, Blast_Score=82, Evalue=6e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001915 [H]

Pfam domain/function: PF01435 Peptidase_M48 [H]

EC number: NA

Molecular weight: Translated: 43699; Mature: 43568

Theoretical pI: Translated: 8.53; Mature: 8.53

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
0.5 %Met     (Translated Protein)
1.2 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
0.2 %Met     (Mature Protein)
1.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCC
>Mature Secondary Structure 
STPPERRVALIVAVLGALAFVALAVVLVPWHPVPGGTPGPADAGSVFTTAEIQRAEDFS
CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
RWARVWSRSSLVVSVLVACTLGFGPWGRRLAARLRGWWWVRVVLAVAVLAVVGRVLTLPF
HHHHHHCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TVLLRREVLDRGLSHQAWSAFALDLVKNELVGIVATSIVLLVLVGCARRWRCAWPAVAGG
HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHH
VLGVLVLAGSFVYPVVVEPLFNSFTSLEAGPLRTQVLALADREHVPVDDVLVADASRRTT
HHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCHHHCCCCCCCCE
TLNAYVSGFGGTRRVVLYDNLVEDVPRDQALSVVAHELAHARHDDVLTGSLLGVAGAVFG
EHHHHHHCCCCCEEEEEEHHHHHHCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
VGLLGLLVGAVGRRGLVMGDPVVVPLVLALVALGTVLATPVENGISRQIETRADVDALEA
HHHHHHHHHHHCCCCCEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHH
THDAGAFIGVQRQLALHSLADPTPPGWSQWWFGSHPTTLTRIAIARQLAGE
HHCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9579061; 9384377; 3145906 [H]