Definition | Nocardioides sp. JS614 chromosome, complete genome. |
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Accession | NC_008699 |
Length | 4,985,871 |
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The map label for this gene is 119717169
Identifier: 119717169
GI number: 119717169
Start: 3128050
End: 3129168
Strand: Reverse
Name: 119717169
Synonym: Noca_2945
Alternate gene names: NA
Gene position: 3129168-3128050 (Counterclockwise)
Preceding gene: 119717170
Following gene: 119717167
Centisome position: 62.76
GC content: 74.53
Gene sequence:
>1119_bases GTGAGCGACTTCCTCCAGCCGGCCTACGGTGAGCGGTCGCTCGGCGACGTCGTCCCGGCCGTCGCGGCCGCGCTCGGGCT CCGGGTGGGGGAGCCGCCGACCGGGCTGGTGCTCCCCGACGCCTCGGCGTACGTCGTCTTCCTCGTCGACGGACTCGGCG CCCGGCTGCTGGAGCGCTATGCGCACGCCGCGCCGTTCCTCTCCGGCCTGCTCGCCGAGCAGGTGCCCGGGACCTCCGGG GTCCCGTCGACCACGGCCACCAGCCTGACCTCGCTCGGGACCGCGCTGACGCCGGGTGCGCACGGGCTCGTGGGCTTCAC CTCGCGGGTCCCCGGCACGGACCGGCTGCTCAACGCGCTGCTGTGGGACAAGGACGTCGACCCGGTGCAGTGGCAGCCGC ACCCGACCGCGTTCGCGCGGCTGCACGAGGCGGGCGGGTCGGTCACCGTCGTCAACAAGCGCGAGTTCGCGCGCAGCGGC CTGACCGTCGCCGCCCACCGGGGCGCCGAGTACGTCGGGGCCGACAAGGTCGGGGAGCGGATCGCGGCCGCGGTCGCGGC GTCCGCGGAGCCCGGCTCGCTGACCTACCTCTACGACGGCGACCTCGACTGGACCGGGCACCGGTACGGCGTCGCCTCCA GCCAGTGGCTCCAGCAGCTCGCGATGATCGACGCGGAGGCCGAGCAGGTGCGCGAGGCGCTGCCCGCCTCGGTCCGGCTC CTCGTGGTCGCCGACCACGGCATGGTCGACTCGCCGCCGGCCAGCCGCCTCGACGTCGACGACCACGCCGACCTGCGGTC AGGGGTGGCGCTGCTCGGGGGTGAGGCCCGCTTCCGTCACCTGTACTGCCACGGTGGGGCGGTCGACGACGTCGTGGCCA CCTGGACCGAGGTGCTCGGCGACCGGGCCGAGGTGATCACCCGGTCGACAGCGATCGGACGCGGCTGGTTCGGCCCGGTG TCGCCGGCCGTGCTGCCTCGCCTCGGTGACGTGATCGTCGCGTGCCGCGGCGACCTGGCCGTCCTCTCGACGTCGGCGTT CCCCTACGAGGCCAAGCTCGTCGGCCTGCACGGCTCGCTCACGCCCGAGGAGATGCTGATCCCGATCCTGCTGAGCTGA
Upstream 100 bases:
>100_bases TCTCGCTGCGGGTCTCGGCGGCCGCGGACGGCGCGGACGCGGTCGCGGGACTGCTGTCCTTCGCCGAGCAGCTCTCCGCC CGGACGCACGCCAACGAGAG
Downstream 100 bases:
>100_bases CGGATCCCGAGCTGGTCCACGACATCGGGGTTCGCCCGCGTCGGCGGCGCATGCCACGTCCGGAGGGTGCGGCCAGGTCG ATGGCGGCCATGAGCCGCAC
Product: type I phosphodiesterase/nucleotide pyrophosphatase
Products: NA
Alternate protein names: Phosphodiesterase; Type I Phosphodiesterase / Nucleotide Pyrophosphatase; AP Superfamily Protein; Nucleotide Pyrophosphatase; LOW QUALITY PROTEIN Phosphodiesterase; Truncated Phosphodiesterase; Protein Of AP Superfamily
Number of amino acids: Translated: 372; Mature: 371
Protein sequence:
>372_residues MSDFLQPAYGERSLGDVVPAVAAALGLRVGEPPTGLVLPDASAYVVFLVDGLGARLLERYAHAAPFLSGLLAEQVPGTSG VPSTTATSLTSLGTALTPGAHGLVGFTSRVPGTDRLLNALLWDKDVDPVQWQPHPTAFARLHEAGGSVTVVNKREFARSG LTVAAHRGAEYVGADKVGERIAAAVAASAEPGSLTYLYDGDLDWTGHRYGVASSQWLQQLAMIDAEAEQVREALPASVRL LVVADHGMVDSPPASRLDVDDHADLRSGVALLGGEARFRHLYCHGGAVDDVVATWTEVLGDRAEVITRSTAIGRGWFGPV SPAVLPRLGDVIVACRGDLAVLSTSAFPYEAKLVGLHGSLTPEEMLIPILLS
Sequences:
>Translated_372_residues MSDFLQPAYGERSLGDVVPAVAAALGLRVGEPPTGLVLPDASAYVVFLVDGLGARLLERYAHAAPFLSGLLAEQVPGTSG VPSTTATSLTSLGTALTPGAHGLVGFTSRVPGTDRLLNALLWDKDVDPVQWQPHPTAFARLHEAGGSVTVVNKREFARSG LTVAAHRGAEYVGADKVGERIAAAVAASAEPGSLTYLYDGDLDWTGHRYGVASSQWLQQLAMIDAEAEQVREALPASVRL LVVADHGMVDSPPASRLDVDDHADLRSGVALLGGEARFRHLYCHGGAVDDVVATWTEVLGDRAEVITRSTAIGRGWFGPV SPAVLPRLGDVIVACRGDLAVLSTSAFPYEAKLVGLHGSLTPEEMLIPILLS >Mature_371_residues SDFLQPAYGERSLGDVVPAVAAALGLRVGEPPTGLVLPDASAYVVFLVDGLGARLLERYAHAAPFLSGLLAEQVPGTSGV PSTTATSLTSLGTALTPGAHGLVGFTSRVPGTDRLLNALLWDKDVDPVQWQPHPTAFARLHEAGGSVTVVNKREFARSGL TVAAHRGAEYVGADKVGERIAAAVAASAEPGSLTYLYDGDLDWTGHRYGVASSQWLQQLAMIDAEAEQVREALPASVRLL VVADHGMVDSPPASRLDVDDHADLRSGVALLGGEARFRHLYCHGGAVDDVVATWTEVLGDRAEVITRSTAIGRGWFGPVS PAVLPRLGDVIVACRGDLAVLSTSAFPYEAKLVGLHGSLTPEEMLIPILLS
Specific function: Unknown
COG id: COG1524
COG function: function code R; Uncharacterized proteins of the AP superfamily
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 39002; Mature: 38870
Theoretical pI: Translated: 4.94; Mature: 4.94
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 1.1 %Met (Translated Protein) 1.6 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 0.8 %Met (Mature Protein) 1.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSDFLQPAYGERSLGDVVPAVAAALGLRVGEPPTGLVLPDASAYVVFLVDGLGARLLERY CCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEECCCCEEEEEEECCHHHHHHHHH AHAAPFLSGLLAEQVPGTSGVPSTTATSLTSLGTALTPGAHGLVGFTSRVPGTDRLLNAL HHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCCCCCCCCEECCCCCCCHHHHHHHH LWDKDVDPVQWQPHPTAFARLHEAGGSVTVVNKREFARSGLTVAAHRGAEYVGADKVGER HHCCCCCCCCCCCCHHHHHHHHHCCCCEEEEEHHHHHHCCCEEEECCCCCCCCHHHHHHH IAAAVAASAEPGSLTYLYDGDLDWTGHRYGVASSQWLQQLAMIDAEAEQVREALPASVRL HHHHHHCCCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHCHHHHHHHHHCCCCEEE LVVADHGMVDSPPASRLDVDDHADLRSGVALLGGEARFRHLYCHGGAVDDVVATWTEVLG EEEECCCCCCCCCCCCCCCCCCHHHHCCHHHCCCCCEEEEEEECCCCHHHHHHHHHHHHC DRAEVITRSTAIGRGWFGPVSPAVLPRLGDVIVACRGDLAVLSTSAFPYEAKLVGLHGSL CHHHHHHHHHHCCCCCCCCCCHHHHHHHCCEEEEECCCEEEEECCCCCCEEEEEECCCCC TPEEMLIPILLS CHHHHEEEEECC >Mature Secondary Structure SDFLQPAYGERSLGDVVPAVAAALGLRVGEPPTGLVLPDASAYVVFLVDGLGARLLERY CCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEECCCCEEEEEEECCHHHHHHHHH AHAAPFLSGLLAEQVPGTSGVPSTTATSLTSLGTALTPGAHGLVGFTSRVPGTDRLLNAL HHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCCCCCCCCEECCCCCCCHHHHHHHH LWDKDVDPVQWQPHPTAFARLHEAGGSVTVVNKREFARSGLTVAAHRGAEYVGADKVGER HHCCCCCCCCCCCCHHHHHHHHHCCCCEEEEEHHHHHHCCCEEEECCCCCCCCHHHHHHH IAAAVAASAEPGSLTYLYDGDLDWTGHRYGVASSQWLQQLAMIDAEAEQVREALPASVRL HHHHHHCCCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHCHHHHHHHHHCCCCEEE LVVADHGMVDSPPASRLDVDDHADLRSGVALLGGEARFRHLYCHGGAVDDVVATWTEVLG EEEECCCCCCCCCCCCCCCCCCHHHHCCHHHCCCCCEEEEEEECCCCHHHHHHHHHHHHC DRAEVITRSTAIGRGWFGPVSPAVLPRLGDVIVACRGDLAVLSTSAFPYEAKLVGLHGSL CHHHHHHHHHHCCCCCCCCCCHHHHHHHCCEEEEECCCEEEEECCCCCCEEEEEECCCCC TPEEMLIPILLS CHHHHEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA