Definition | Nocardioides sp. JS614 chromosome, complete genome. |
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Accession | NC_008699 |
Length | 4,985,871 |
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The map label for this gene is 119717095
Identifier: 119717095
GI number: 119717095
Start: 3050190
End: 3050573
Strand: Reverse
Name: 119717095
Synonym: Noca_2871
Alternate gene names: NA
Gene position: 3050573-3050190 (Counterclockwise)
Preceding gene: 119717097
Following gene: 119717094
Centisome position: 61.18
GC content: 71.88
Gene sequence:
>384_bases GTGTCCCGGGCCGGGGCGTCGAAGGGTTCAACCCCGGGAGGGGGAGAAGGTCACGGCCGCGCGGCCACAACTACCCTGGG CGGCATGATCGTCGCGTTCAGCATCTCCCCGACCACCGGTGACGAGACCGGCGGCGTCTCCGAGGCCGTGGCCGCCGCCG TCCGGGTGGTCCGCGAGTCCGGCCTGCCGCACGAGACCAACGCGATGTTCACCAACATCGAGGGGGAGTGGGACGAGGTG ATGGCGGTGGTCAAGCGTGCCGTCGACGTCGTCGCCGCGGTGTCCCCCCGGGTCGGGCTGGTGCTCAAGGCCGACATCCG GCCGGGGTACGACGGGCAGCTCACCGCGAAGGTCGAGCGCGTCGAGCGACTGCTCGCGGACTGA
Upstream 100 bases:
>100_bases CACGGACGGTCGCGGCGGTCAGCCGGAGCATCCGGAGCTCGTGCCGTAGGCAGATCCTCGTCATCTCGTCCCCTCTCGAG CCGGCGGGCGACCACCCCGA
Downstream 100 bases:
>100_bases CCGTCGCGCACCGACCTGCTAGGCGGGCTTCCGGGACGCCTGCAACTGGGTCTCGGTGTCGGCGAAGCCGACCGAGCGGT ACACCCGGATCGCGAGGTAC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 127; Mature: 126
Protein sequence:
>127_residues MSRAGASKGSTPGGGEGHGRAATTTLGGMIVAFSISPTTGDETGGVSEAVAAAVRVVRESGLPHETNAMFTNIEGEWDEV MAVVKRAVDVVAAVSPRVGLVLKADIRPGYDGQLTAKVERVERLLAD
Sequences:
>Translated_127_residues MSRAGASKGSTPGGGEGHGRAATTTLGGMIVAFSISPTTGDETGGVSEAVAAAVRVVRESGLPHETNAMFTNIEGEWDEV MAVVKRAVDVVAAVSPRVGLVLKADIRPGYDGQLTAKVERVERLLAD >Mature_126_residues SRAGASKGSTPGGGEGHGRAATTTLGGMIVAFSISPTTGDETGGVSEAVAAAVRVVRESGLPHETNAMFTNIEGEWDEVM AVVKRAVDVVAAVSPRVGLVLKADIRPGYDGQLTAKVERVERLLAD
Specific function: Unknown
COG id: COG0011
COG function: function code S; Uncharacterized conserved protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the UPF0045 family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002767 - InterPro: IPR016198 [H]
Pfam domain/function: PF01910 DUF77 [H]
EC number: NA
Molecular weight: Translated: 13019; Mature: 12888
Theoretical pI: Translated: 5.18; Mature: 5.18
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 3.1 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSRAGASKGSTPGGGEGHGRAATTTLGGMIVAFSISPTTGDETGGVSEAVAAAVRVVRES CCCCCCCCCCCCCCCCCCCCCHHHHHCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHC GLPHETNAMFTNIEGEWDEVMAVVKRAVDVVAAVSPRVGLVLKADIRPGYDGQLTAKVER CCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCHHHHHHH VERLLAD HHHHHCC >Mature Secondary Structure SRAGASKGSTPGGGEGHGRAATTTLGGMIVAFSISPTTGDETGGVSEAVAAAVRVVRES CCCCCCCCCCCCCCCCCCCCHHHHHCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHC GLPHETNAMFTNIEGEWDEVMAVVKRAVDVVAAVSPRVGLVLKADIRPGYDGQLTAKVER CCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCHHHHHHH VERLLAD HHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9634230; 12218036 [H]