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The map label for this gene is ypfJ [C]

Identifier: 119716788

GI number: 119716788

Start: 2730104

End: 2731036

Strand: Reverse

Name: ypfJ [C]

Synonym: Noca_2562

Alternate gene names: 119716788

Gene position: 2731036-2730104 (Counterclockwise)

Preceding gene: 119716792

Following gene: 119716784

Centisome position: 54.78

GC content: 72.24

Gene sequence:

>933_bases
ATGAGGTTCAACCCCAAGGCCCGGCTGGACACCAGCCGCGTGCGCGACCGGGGCCGCGGGAGCGGCGGCGGCCGCGGAGC
CGGCGTCAGCGGTGGCATGCCGATTCCCGGTGGGCTGCTCGGCGGCGGTGGCATCACCGGGGTGATCGTCGTCGTGCTGT
TCCTGGTCCTGACCCAGTGCCTCGGCGACGGCGGCGGCCTCGGCACCGGCGGCGGCCCGCTCGACGACAGTCGGATGAGC
GGCACCGACCGCTACGCGTCCTGCCGGACCGGCGAGGACGCCAACCAGAGCGCCGACTGCGCCCGGGTGGCGGTCGAGAA
CTCGCTCTACGACTTCTGGAGCGACGAGCTCGGCTCGAGGTTCCGCCCGGAGAAGGAGGTGGACACGTTCACGGGCGCCA
CGAGCACCGGCTGTGGGCAGGCCTCCTCGGACGTCGGGCCGTTCTACTGCCCGGTCGACGAGACGATCTACCTCGACACG
ACGTTCTTCGACGACGTCCTCGAGCGCCAGCTGGGCGGCCCCGAGGGCGGGTTCGTCGAGCCGTACGTGCTGGCGCACGA
GTACGGCCACCACATCCAGAACCTGCTCGGCACCATGGGCAAGGTGAAGACCCAGCAGGGCCCCACCAGCGACTCGGTGC
GCCTGGAGCTCCAGGCCGACTGCTACGCCGGCATGTGGGCCAAGGCCGCGACCACGACGACCGACGCGACCGGCGAGGCG
CTGTTCTCCTCGCTGACCGACCAGGACATCCAGCAGGCGATCGAGGCGGCCACGGCGGTCGGCGACGACCGGATCCAGCA
GCGCGGCGGCGGCCGGGTCAACCCCGAGCAGTGGACGCACGGCTCGGCCCAGCAGCGGGTCGAGTGGTTCACGACCGGCT
ACCGCCAGGGCGACCTCGACGCGTGCGACACGTTCGCGGCCGGAGCGCTCTGA

Upstream 100 bases:

>100_bases
CGAGGGAGCCTCGCGATTCTGTGGCGTGCAGATCATGAGGCTTGAATCCTAGATGTGGGTACGGTCCGTCCAGACATCGG
CGGCGACCCCAGGAGGACGC

Downstream 100 bases:

>100_bases
TCATCCCTCTACGAGCGCCTCGATGTGGGCGAACTGGCGCTGCAGGGCGCGCAGGTGCGGCGCGACGGACGGGTGGCGGA
ACTTGCCGGCCAGGGCGCCC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 310; Mature: 310

Protein sequence:

>310_residues
MRFNPKARLDTSRVRDRGRGSGGGRGAGVSGGMPIPGGLLGGGGITGVIVVVLFLVLTQCLGDGGGLGTGGGPLDDSRMS
GTDRYASCRTGEDANQSADCARVAVENSLYDFWSDELGSRFRPEKEVDTFTGATSTGCGQASSDVGPFYCPVDETIYLDT
TFFDDVLERQLGGPEGGFVEPYVLAHEYGHHIQNLLGTMGKVKTQQGPTSDSVRLELQADCYAGMWAKAATTTTDATGEA
LFSSLTDQDIQQAIEAATAVGDDRIQQRGGGRVNPEQWTHGSAQQRVEWFTTGYRQGDLDACDTFAAGAL

Sequences:

>Translated_310_residues
MRFNPKARLDTSRVRDRGRGSGGGRGAGVSGGMPIPGGLLGGGGITGVIVVVLFLVLTQCLGDGGGLGTGGGPLDDSRMS
GTDRYASCRTGEDANQSADCARVAVENSLYDFWSDELGSRFRPEKEVDTFTGATSTGCGQASSDVGPFYCPVDETIYLDT
TFFDDVLERQLGGPEGGFVEPYVLAHEYGHHIQNLLGTMGKVKTQQGPTSDSVRLELQADCYAGMWAKAATTTTDATGEA
LFSSLTDQDIQQAIEAATAVGDDRIQQRGGGRVNPEQWTHGSAQQRVEWFTTGYRQGDLDACDTFAAGAL
>Mature_310_residues
MRFNPKARLDTSRVRDRGRGSGGGRGAGVSGGMPIPGGLLGGGGITGVIVVVLFLVLTQCLGDGGGLGTGGGPLDDSRMS
GTDRYASCRTGEDANQSADCARVAVENSLYDFWSDELGSRFRPEKEVDTFTGATSTGCGQASSDVGPFYCPVDETIYLDT
TFFDDVLERQLGGPEGGFVEPYVLAHEYGHHIQNLLGTMGKVKTQQGPTSDSVRLELQADCYAGMWAKAATTTTDATGEA
LFSSLTDQDIQQAIEAATAVGDDRIQQRGGGRVNPEQWTHGSAQQRVEWFTTGYRQGDLDACDTFAAGAL

Specific function: Unknown

COG id: COG2321

COG function: function code R; Predicted metalloprotease

Gene ontology:

Cell location: Membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1788819, Length=265, Percent_Identity=36.9811320754717, Blast_Score=164, Evalue=7e-42,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007343 [H]

Pfam domain/function: PF04228 Zn_peptidase [H]

EC number: NA

Molecular weight: Translated: 32703; Mature: 32703

Theoretical pI: Translated: 4.37; Mature: 4.37

Prosite motif: PS00142 ZINC_PROTEASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.3 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
2.3 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRFNPKARLDTSRVRDRGRGSGGGRGAGVSGGMPIPGGLLGGGGITGVIVVVLFLVLTQC
CCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
LGDGGGLGTGGGPLDDSRMSGTDRYASCRTGEDANQSADCARVAVENSLYDFWSDELGSR
HCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHC
FRPEKEVDTFTGATSTGCGQASSDVGPFYCPVDETIYLDTTFFDDVLERQLGGPEGGFVE
CCCCHHHHHHCCCCCCCCCCCCCCCCCEECCCCCEEEEEHHHHHHHHHHHHCCCCCCCCC
PYVLAHEYGHHIQNLLGTMGKVKTQQGPTSDSVRLELQADCYAGMWAKAATTTTDATGEA
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCHHHHHHHHHHCCCCCCHHHH
LFSSLTDQDIQQAIEAATAVGDDRIQQRGGGRVNPEQWTHGSAQQRVEWFTTGYRQGDLD
HHHHHHHHHHHHHHHHHHHHCHHHHHHCCCCCCCHHHHCCCCHHHHHHHHHCCCCCCCCH
ACDTFAAGAL
HHHHHHHCCC
>Mature Secondary Structure
MRFNPKARLDTSRVRDRGRGSGGGRGAGVSGGMPIPGGLLGGGGITGVIVVVLFLVLTQC
CCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
LGDGGGLGTGGGPLDDSRMSGTDRYASCRTGEDANQSADCARVAVENSLYDFWSDELGSR
HCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHC
FRPEKEVDTFTGATSTGCGQASSDVGPFYCPVDETIYLDTTFFDDVLERQLGGPEGGFVE
CCCCHHHHHHCCCCCCCCCCCCCCCCCEECCCCCEEEEEHHHHHHHHHHHHCCCCCCCCC
PYVLAHEYGHHIQNLLGTMGKVKTQQGPTSDSVRLELQADCYAGMWAKAATTTTDATGEA
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCHHHHHHHHHHCCCCCCHHHH
LFSSLTDQDIQQAIEAATAVGDDRIQQRGGGRVNPEQWTHGSAQQRVEWFTTGYRQGDLD
HHHHHHHHHHHHHHHHHHHHCHHHHHHCCCCCCCHHHHCCCCHHHHHHHHHCCCCCCCCH
ACDTFAAGAL
HHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]