Definition | Nocardioides sp. JS614 chromosome, complete genome. |
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Accession | NC_008699 |
Length | 4,985,871 |
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The map label for this gene is 119716730
Identifier: 119716730
GI number: 119716730
Start: 2672374
End: 2673105
Strand: Reverse
Name: 119716730
Synonym: Noca_2504
Alternate gene names: NA
Gene position: 2673105-2672374 (Counterclockwise)
Preceding gene: 119716737
Following gene: 119716717
Centisome position: 53.61
GC content: 68.44
Gene sequence:
>732_bases ATGCCACTGCACGGAACGCTGTTGGAGGAGTTCAGGGAGAAGTCGTCGACCGACCCGTTCTCCCTGCAGAACAAGAAGCT GCTGAAGATCGACATGGGCTACGGTCCGGTCTGGGCCAAGACGGGCTCGATGGTCGCCTACCAAGGCGATGTCCGGTTCG AGAACAAGGGCTCGGGTGGCCTGGGCAAGATGCTGAAGCAGGCGGTGACCGGCGAGGGCGTCGACATGATGCAGTGCACC GGCAGCGGTGAGCTGTTCGTGGCCGACTTCGCCGCCGACGTCCAGGTGCTCTACCTGGAGAACGACCTGGTGTCGGTGAA CGGATCCAGCGTGCTGGCCTTCTCCTCCTCCATCGAGTGGGAGATCCACCGGGTCCAGGCCCGCGGCGCGGTGATGACCG GCGGGCTCTACAACGTGTCGCTGCGCGGCACCGGCTACGTCGCCGTCACCACCAGCGGCGAGCCCGTGGCACTCGACGTC GCGAGCGCGCCGACGTTCGCCGACGCACAGGCGGTCGTGCTGTGGACCTCCGGGGTGTCCATGGACATCCGGGTCGACAC CGGGGGCGTGAAGTCCCTGGTGCGCGGGGGCACGGGCGAGACGTTCCAGATGGCGTTCGGCGGTCAGGGGTACGTCGTCG TCCAGCCGAGCGAGTCCGTGATCACCGGCGGCCACCAGGCGGCCACGGGCAAGAGCAGCGGCGGGGGGCTCGGCGGGCTG CTCGGCGGCTGA
Upstream 100 bases:
>100_bases CGTCGCCGTGCTCCCGTTCGGCAGCGTACGCCGTCCGACGCTCGTAGAGTCCGGAACAGGAGGACGCCGGCGGGAGCCGA CGGCACCGGGAGGAGCCGAG
Downstream 100 bases:
>100_bases GCTGCCCGCTCCGATGCCCCACCGACCGGTCAGTCCCGAACCGGATCGGGCGCGTCGACCTGTGCCCAGCGCGCCAGGGC CTCGTGGAGCTCCTTGTGCC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 243; Mature: 242
Protein sequence:
>243_residues MPLHGTLLEEFREKSSTDPFSLQNKKLLKIDMGYGPVWAKTGSMVAYQGDVRFENKGSGGLGKMLKQAVTGEGVDMMQCT GSGELFVADFAADVQVLYLENDLVSVNGSSVLAFSSSIEWEIHRVQARGAVMTGGLYNVSLRGTGYVAVTTSGEPVALDV ASAPTFADAQAVVLWTSGVSMDIRVDTGGVKSLVRGGTGETFQMAFGGQGYVVVQPSESVITGGHQAATGKSSGGGLGGL LGG
Sequences:
>Translated_243_residues MPLHGTLLEEFREKSSTDPFSLQNKKLLKIDMGYGPVWAKTGSMVAYQGDVRFENKGSGGLGKMLKQAVTGEGVDMMQCT GSGELFVADFAADVQVLYLENDLVSVNGSSVLAFSSSIEWEIHRVQARGAVMTGGLYNVSLRGTGYVAVTTSGEPVALDV ASAPTFADAQAVVLWTSGVSMDIRVDTGGVKSLVRGGTGETFQMAFGGQGYVVVQPSESVITGGHQAATGKSSGGGLGGL LGG >Mature_242_residues PLHGTLLEEFREKSSTDPFSLQNKKLLKIDMGYGPVWAKTGSMVAYQGDVRFENKGSGGLGKMLKQAVTGEGVDMMQCTG SGELFVADFAADVQVLYLENDLVSVNGSSVLAFSSSIEWEIHRVQARGAVMTGGLYNVSLRGTGYVAVTTSGEPVALDVA SAPTFADAQAVVLWTSGVSMDIRVDTGGVKSLVRGGTGETFQMAFGGQGYVVVQPSESVITGGHQAATGKSSGGGLGGLL GG
Specific function: Unknown
COG id: COG2013
COG function: function code S; Uncharacterized conserved protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 25156; Mature: 25025
Theoretical pI: Translated: 4.84; Mature: 4.84
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 3.7 %Met (Translated Protein) 4.1 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 3.3 %Met (Mature Protein) 3.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPLHGTLLEEFREKSSTDPFSLQNKKLLKIDMGYGPVWAKTGSMVAYQGDVRFENKGSGG CCCCHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCEEECCCCEEEEECCEEEECCCCCC LGKMLKQAVTGEGVDMMQCTGSGELFVADFAADVQVLYLENDLVSVNGSSVLAFSSSIEW HHHHHHHHHCCCCCEEEEECCCCCEEEEEECCCEEEEEEECCEEEECCCEEEEEECCCCE EIHRVQARGAVMTGGLYNVSLRGTGYVAVTTSGEPVALDVASAPTFADAQAVVLWTSGVS EEEEEEECCEEEECCEEEEEECCCEEEEEEECCCEEEEEECCCCCCCCCEEEEEEECCCE MDIRVDTGGVKSLVRGGTGETFQMAFGGQGYVVVQPSESVITGGHQAATGKSSGGGLGGL EEEEECCCCHHHHHCCCCCCEEEEEECCCEEEEECCCCCEEECCCCCCCCCCCCCCCCCC LGG CCC >Mature Secondary Structure PLHGTLLEEFREKSSTDPFSLQNKKLLKIDMGYGPVWAKTGSMVAYQGDVRFENKGSGG CCCHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCEEECCCCEEEEECCEEEECCCCCC LGKMLKQAVTGEGVDMMQCTGSGELFVADFAADVQVLYLENDLVSVNGSSVLAFSSSIEW HHHHHHHHHCCCCCEEEEECCCCCEEEEEECCCEEEEEEECCEEEECCCEEEEEECCCCE EIHRVQARGAVMTGGLYNVSLRGTGYVAVTTSGEPVALDVASAPTFADAQAVVLWTSGVS EEEEEEECCEEEECCEEEEEECCCEEEEEEECCCEEEEEECCCCCCCCCEEEEEEECCCE MDIRVDTGGVKSLVRGGTGETFQMAFGGQGYVVVQPSESVITGGHQAATGKSSGGGLGGL EEEEECCCCHHHHHCCCCCCEEEEEECCCEEEEECCCCCEEECCCCCCCCCCCCCCCCCC LGG CCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA