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The map label for this gene is tapB [H]

Identifier: 119715366

GI number: 119715366

Start: 1195424

End: 1197115

Strand: Direct

Name: tapB [H]

Synonym: Noca_1128

Alternate gene names: 119715366

Gene position: 1195424-1197115 (Clockwise)

Preceding gene: 119715365

Following gene: 119715369

Centisome position: 23.98

GC content: 70.51

Gene sequence:

>1692_bases
ATGACGGTGCGCGCACAGACCTCCGGAGACACCGTGCGTGCCCTGGTCGAGGGCGGCTGGATCACCCGCGACCAGCTCAG
CGAGGCGGGCCGGCTCGCGGACGAGCGGTCCCAGACCGTGCTCGAGGTGCTGCTCGAGAGCGGCTGGGTGGACCGCACCA
CGGTCGTGCGCACCGCAGCCGCCTCGGCCGGCCTGGAGTACGTCGAGCTCACCGACTTCATCGTCGACATGGCGGCCGTG
AGCCTGCTGCCGGCGGAGTTCGCCCGCCGCACCGGCGTACTGCCGCTGGTCCACGAGGACGGCGAGCTGCTGGTGGCCGT
GAGCGTGCGCCAGGCGGGCGACATCGAGCTCAAGGACGACCTGAGCCGGCTGACCCGCAGCCGGGTCCGCTTCGCGATCG
CCGGCCGCAGCGACATCGACGCCCGGATCAACCAGGTCTACCGCGCCGAGGGCGAGCTCACCGACATCACCTCCGACCTG
GCGCCCGAGGACGAGGTCGACGACCTCAGTACCCTCACCGAGGTCTCCGACGAGGCGCCGGTGGTCCGCTTCGTCAACCT
GCTGATCAACCAGGCGATCAACGACCGCGCCTCGGACATCCACATCGAGCCGACCGAGCGGGACATGCGGGTCCGGTACC
GGATCGACGGGGTGCTCCACGACGCCCACCGCTCCCCGAAGAGCATCCAGAACGGGGTGATCTCGCGCCTCAAGATCATG
GCCGAGATGAACATCGCCGAGCGTCGGGTGCCGCAGGACGGCCGGATGTCGGTCACCCACCAGGGCCGGCGCATCGACCT
CCGCGTCGCCACCCTCCCGACCGTGTGGGGCGAGAAGGTGGTCGCCCGGATCCTGGACACCTCCAACACCCAGCTCGGCC
TCGACGACCTGGGGTTCAGCAACGAGAACTACGAGCGCTACCGGGCCTCGTACACCAAGCCCTACGGGATGATCCTGGCG
ACCGGGCCGACCGGGTCCGGCAAGTCGACGACGCTCTACGCGACGCTCAACCTGCTCAACCGGCCCGACGTCAACGTGAT
CACCGTCGAGGACCCGGTGGAGTACCGCCTGCCGGGGATCAACCAGGTCCAGACGAACGCGAAGGCGGGGCTGACCTTCG
CCTCCGCGCTGCGCTCGATCCTGCGCTCGGACCCCGACATCGTGCTGATCGGCGAGATCCGCGACCACGAGACCGCCCAG
ATCGCGGTCGAGGCCGCGCTGACCGGCCACCTGGTGCTCTCGACGCTGCACACCAACGACGCGCCCTCGGCGGTGACCCG
CCTGATCGAGATGGGCATCGAGCCGTTCCTGGTCGGGTCCGCGCTCGACGCCGTACTCGCGCAGCGGCTGTGTCGCTCGC
TCTGCGAGCGCTGCAAGCAGGCCTACCAGCCGGATCCGGCGGAGCTGCAGCGGATCGGCTTCCCGTGGGCGGAGGGCGCG
GAGGTGCCGGTGCTGTACCGGCACGTCGGCTGCTCCTCCTGCTCGCAGACCGGCTACCGCGGCCGGATGGCGCTGCACGA
GGTGATGACGGTCAGCGAGGAGGTCTCGCGGCTCGCCGTCGCGCGCGCGTCGACCGACGAGGTCGGCCGCACCGCCCGGG
AGCAGGGGATGACCACCTTGAAGTCGGACGGCTGGCAGAAGGTGCTGCAGGGCCGCACCTCCATCGAGGAGGTCCTCCGG
GTCGTCGCCTGA

Upstream 100 bases:

>100_bases
CCCTGATCGAGCCGCTGATGATCGCGTTCCTCGGCGGCCTCGTCGGGTCGATGATCGTCGCGCTGTACATGCCGATGTTC
AAGATCTACGACATGATCGG

Downstream 100 bases:

>100_bases
CCGCTACCCCTCGGGGATGATCGAGAGCGCCGCGGCGGGGTTCTCCCGGTAGCGCACGATCAGCTCGCCGGTGGCCTCGT
CGATACGCTCGTGCAGGGCG

Product: type II secretion system protein E

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 563; Mature: 562

Protein sequence:

>563_residues
MTVRAQTSGDTVRALVEGGWITRDQLSEAGRLADERSQTVLEVLLESGWVDRTTVVRTAAASAGLEYVELTDFIVDMAAV
SLLPAEFARRTGVLPLVHEDGELLVAVSVRQAGDIELKDDLSRLTRSRVRFAIAGRSDIDARINQVYRAEGELTDITSDL
APEDEVDDLSTLTEVSDEAPVVRFVNLLINQAINDRASDIHIEPTERDMRVRYRIDGVLHDAHRSPKSIQNGVISRLKIM
AEMNIAERRVPQDGRMSVTHQGRRIDLRVATLPTVWGEKVVARILDTSNTQLGLDDLGFSNENYERYRASYTKPYGMILA
TGPTGSGKSTTLYATLNLLNRPDVNVITVEDPVEYRLPGINQVQTNAKAGLTFASALRSILRSDPDIVLIGEIRDHETAQ
IAVEAALTGHLVLSTLHTNDAPSAVTRLIEMGIEPFLVGSALDAVLAQRLCRSLCERCKQAYQPDPAELQRIGFPWAEGA
EVPVLYRHVGCSSCSQTGYRGRMALHEVMTVSEEVSRLAVARASTDEVGRTAREQGMTTLKSDGWQKVLQGRTSIEEVLR
VVA

Sequences:

>Translated_563_residues
MTVRAQTSGDTVRALVEGGWITRDQLSEAGRLADERSQTVLEVLLESGWVDRTTVVRTAAASAGLEYVELTDFIVDMAAV
SLLPAEFARRTGVLPLVHEDGELLVAVSVRQAGDIELKDDLSRLTRSRVRFAIAGRSDIDARINQVYRAEGELTDITSDL
APEDEVDDLSTLTEVSDEAPVVRFVNLLINQAINDRASDIHIEPTERDMRVRYRIDGVLHDAHRSPKSIQNGVISRLKIM
AEMNIAERRVPQDGRMSVTHQGRRIDLRVATLPTVWGEKVVARILDTSNTQLGLDDLGFSNENYERYRASYTKPYGMILA
TGPTGSGKSTTLYATLNLLNRPDVNVITVEDPVEYRLPGINQVQTNAKAGLTFASALRSILRSDPDIVLIGEIRDHETAQ
IAVEAALTGHLVLSTLHTNDAPSAVTRLIEMGIEPFLVGSALDAVLAQRLCRSLCERCKQAYQPDPAELQRIGFPWAEGA
EVPVLYRHVGCSSCSQTGYRGRMALHEVMTVSEEVSRLAVARASTDEVGRTAREQGMTTLKSDGWQKVLQGRTSIEEVLR
VVA
>Mature_562_residues
TVRAQTSGDTVRALVEGGWITRDQLSEAGRLADERSQTVLEVLLESGWVDRTTVVRTAAASAGLEYVELTDFIVDMAAVS
LLPAEFARRTGVLPLVHEDGELLVAVSVRQAGDIELKDDLSRLTRSRVRFAIAGRSDIDARINQVYRAEGELTDITSDLA
PEDEVDDLSTLTEVSDEAPVVRFVNLLINQAINDRASDIHIEPTERDMRVRYRIDGVLHDAHRSPKSIQNGVISRLKIMA
EMNIAERRVPQDGRMSVTHQGRRIDLRVATLPTVWGEKVVARILDTSNTQLGLDDLGFSNENYERYRASYTKPYGMILAT
GPTGSGKSTTLYATLNLLNRPDVNVITVEDPVEYRLPGINQVQTNAKAGLTFASALRSILRSDPDIVLIGEIRDHETAQI
AVEAALTGHLVLSTLHTNDAPSAVTRLIEMGIEPFLVGSALDAVLAQRLCRSLCERCKQAYQPDPAELQRIGFPWAEGAE
VPVLYRHVGCSSCSQTGYRGRMALHEVMTVSEEVSRLAVARASTDEVGRTAREQGMTTLKSDGWQKVLQGRTSIEEVLRV
VA

Specific function: Involved in the translocation of the type IV pilin [H]

COG id: COG2804

COG function: function code NU; Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the GSP E family [H]

Homologues:

Organism=Escherichia coli, GI1789723, Length=441, Percent_Identity=46.9387755102041, Blast_Score=384, Evalue=1e-108,
Organism=Escherichia coli, GI1786296, Length=462, Percent_Identity=38.5281385281385, Blast_Score=304, Evalue=1e-83,
Organism=Escherichia coli, GI87082188, Length=146, Percent_Identity=49.3150684931507, Blast_Score=116, Evalue=3e-27,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013374
- InterPro:   IPR007831
- InterPro:   IPR001482 [H]

Pfam domain/function: PF00437 GSPII_E; PF05157 GSPII_E_N [H]

EC number: NA

Molecular weight: Translated: 61960; Mature: 61829

Theoretical pI: Translated: 5.01; Mature: 5.01

Prosite motif: PS00662 T2SP_E

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTVRAQTSGDTVRALVEGGWITRDQLSEAGRLADERSQTVLEVLLESGWVDRTTVVRTAA
CEEECCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
ASAGLEYVELTDFIVDMAAVSLLPAEFARRTGVLPLVHEDGELLVAVSVRQAGDIELKDD
HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCEEEEEEECCCCCCCHHHH
LSRLTRSRVRFAIAGRSDIDARINQVYRAEGELTDITSDLAPEDEVDDLSTLTEVSDEAP
HHHHHHHHHEEEECCCCCHHHHHHHHHHCCCCHHHHHHCCCCCCCHHHHHHHHHHCCCCH
VVRFVNLLINQAINDRASDIHIEPTERDMRVRYRIDGVLHDAHRSPKSIQNGVISRLKIM
HHHHHHHHHHHHHCCCCCCEEECCCCCCCEEEEEEHHHHHHHCCCHHHHHHHHHHHHHHH
AEMNIAERRVPQDGRMSVTHQGRRIDLRVATLPTVWGEKVVARILDTSNTQLGLDDLGFS
HHHCHHHHCCCCCCCEEEEECCCEEEEEEEECCCHHHHHHHHHHHCCCCCEECCHHCCCC
NENYERYRASYTKPYGMILATGPTGSGKSTTLYATLNLLNRPDVNVITVEDPVEYRLPGI
CCCHHHHHHHCCCCCEEEEEECCCCCCCCEEEEEEEECCCCCCCEEEEECCCCCCCCCCC
NQVQTNAKAGLTFASALRSILRSDPDIVLIGEIRDHETAQIAVEAALTGHLVLSTLHTND
CHHHCCCHHCHHHHHHHHHHHCCCCCEEEEECCCCCCHHHEEHHHHHHHHHHEEECCCCC
APSAVTRLIEMGIEPFLVGSALDAVLAQRLCRSLCERCKQAYQPDPAELQRIGFPWAEGA
CHHHHHHHHHHCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCCCC
EVPVLYRHVGCSSCSQTGYRGRMALHEVMTVSEEVSRLAVARASTDEVGRTAREQGMTTL
CCCEEEECCCCCCHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCHHH
KSDGWQKVLQGRTSIEEVLRVVA
HCCHHHHHHHCCHHHHHHHHHHC
>Mature Secondary Structure 
TVRAQTSGDTVRALVEGGWITRDQLSEAGRLADERSQTVLEVLLESGWVDRTTVVRTAA
EEECCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
ASAGLEYVELTDFIVDMAAVSLLPAEFARRTGVLPLVHEDGELLVAVSVRQAGDIELKDD
HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCEEEEEEECCCCCCCHHHH
LSRLTRSRVRFAIAGRSDIDARINQVYRAEGELTDITSDLAPEDEVDDLSTLTEVSDEAP
HHHHHHHHHEEEECCCCCHHHHHHHHHHCCCCHHHHHHCCCCCCCHHHHHHHHHHCCCCH
VVRFVNLLINQAINDRASDIHIEPTERDMRVRYRIDGVLHDAHRSPKSIQNGVISRLKIM
HHHHHHHHHHHHHCCCCCCEEECCCCCCCEEEEEEHHHHHHHCCCHHHHHHHHHHHHHHH
AEMNIAERRVPQDGRMSVTHQGRRIDLRVATLPTVWGEKVVARILDTSNTQLGLDDLGFS
HHHCHHHHCCCCCCCEEEEECCCEEEEEEEECCCHHHHHHHHHHHCCCCCEECCHHCCCC
NENYERYRASYTKPYGMILATGPTGSGKSTTLYATLNLLNRPDVNVITVEDPVEYRLPGI
CCCHHHHHHHCCCCCEEEEEECCCCCCCCEEEEEEEECCCCCCCEEEEECCCCCCCCCCC
NQVQTNAKAGLTFASALRSILRSDPDIVLIGEIRDHETAQIAVEAALTGHLVLSTLHTND
CHHHCCCHHCHHHHHHHHHHHCCCCCEEEEECCCCCCHHHEEHHHHHHHHHHEEECCCCC
APSAVTRLIEMGIEPFLVGSALDAVLAQRLCRSLCERCKQAYQPDPAELQRIGFPWAEGA
CHHHHHHHHHHCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCCCC
EVPVLYRHVGCSSCSQTGYRGRMALHEVMTVSEEVSRLAVARASTDEVGRTAREQGMTTL
CCCEEEECCCCCCHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCHHH
KSDGWQKVLQGRTSIEEVLRVVA
HCCHHHHHHHCCHHHHHHHHHHC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8820654 [H]