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The map label for this gene is yqfA [C]

Identifier: 119715295

GI number: 119715295

Start: 1113257

End: 1114021

Strand: Reverse

Name: yqfA [C]

Synonym: Noca_1055

Alternate gene names: 119715295

Gene position: 1114021-1113257 (Counterclockwise)

Preceding gene: 119715299

Following gene: 119715294

Centisome position: 22.34

GC content: 71.11

Gene sequence:

>765_bases
ATGAACCAGCCGATGGAGCGGGCAGTGGACCGGGCCATGGACCGGGCCCTGACCGGCGCGGACGCCGTGCGCGCAGGCCT
CGACCACCTGCACGAGGCCGTAGCCGACCTCAAGCCGCGGCTGCGTGGCTGGCTGCACCTCGGCATCGCGCCGCTGACGC
TCGCCGCGGGCATCGTCCTCGTCGCGCTGGCCCCCACGACCCCGAGCCGGGTCGCGGCGGCGCTGTTCACCGGCTCCGCG
CTGGTGCTCTTCACGGTCTCGGCGATCTACCACACCGGCACCTGGTCGCCCCGGGTGTGGGCGTTCCTGCGGCGCTTCGA
CCACGCCAACATCTTCTTGCTGATCGCGGGCTCCTACACGCCGTTCAGCGTGCTGCTCCTGGAGGGCACGGCGCGGGTCG
CGCTGCTGGCCACGGTCTGGAGCGGTGCGGTGCTCGGCGTGCTGTTCCGGGTGTTCTGGACCGACGCACCGCGCTGGCTC
TACGTGCCGATCTACATCGCCCTCGGCTGGGCCGCGGTCTTCTTCATCCCGGCGTTCCTCGACGGCGCGACCCGGCTGGG
CGGCCTCGGCGTCGGCGTCGCGACGTTCGTGATGATCGTCGTCGGCGGCGCCCTGTACACCGTGGGCGGCGTCGTGTACG
GCTTCAAGCGGCCCAACCCGTGGCCGCGCTGGTTCGGCTTCCACGAGGTGTTCCACACCTTCACGATCCTGGCCTTCGTC
AGCCACTACGTGGGTGTGTCGCTCGCAACGTACAGCCTGCGCTGA

Upstream 100 bases:

>100_bases
CGCCTCGTGGCGCTCTCGACGACGTGACGTCCACCGCCTCGCTCGCCCGGACCGGCCGGATCCGGGGTTGCCGTGACCGT
ACTGCGGGTACGGTTCCCCC

Downstream 100 bases:

>100_bases
TCGTCGTACGCCGGCCACCCGAGTGGTAAGCCGGAGACATGCGCACGCACGAGCAGCAGGCGCTGAACGCCGTCCAGCGC
CCTGAGGCGTATCGCGAGGT

Product: Hly-III family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 254; Mature: 254

Protein sequence:

>254_residues
MNQPMERAVDRAMDRALTGADAVRAGLDHLHEAVADLKPRLRGWLHLGIAPLTLAAGIVLVALAPTTPSRVAAALFTGSA
LVLFTVSAIYHTGTWSPRVWAFLRRFDHANIFLLIAGSYTPFSVLLLEGTARVALLATVWSGAVLGVLFRVFWTDAPRWL
YVPIYIALGWAAVFFIPAFLDGATRLGGLGVGVATFVMIVVGGALYTVGGVVYGFKRPNPWPRWFGFHEVFHTFTILAFV
SHYVGVSLATYSLR

Sequences:

>Translated_254_residues
MNQPMERAVDRAMDRALTGADAVRAGLDHLHEAVADLKPRLRGWLHLGIAPLTLAAGIVLVALAPTTPSRVAAALFTGSA
LVLFTVSAIYHTGTWSPRVWAFLRRFDHANIFLLIAGSYTPFSVLLLEGTARVALLATVWSGAVLGVLFRVFWTDAPRWL
YVPIYIALGWAAVFFIPAFLDGATRLGGLGVGVATFVMIVVGGALYTVGGVVYGFKRPNPWPRWFGFHEVFHTFTILAFV
SHYVGVSLATYSLR
>Mature_254_residues
MNQPMERAVDRAMDRALTGADAVRAGLDHLHEAVADLKPRLRGWLHLGIAPLTLAAGIVLVALAPTTPSRVAAALFTGSA
LVLFTVSAIYHTGTWSPRVWAFLRRFDHANIFLLIAGSYTPFSVLLLEGTARVALLATVWSGAVLGVLFRVFWTDAPRWL
YVPIYIALGWAAVFFIPAFLDGATRLGGLGVGVATFVMIVVGGALYTVGGVVYGFKRPNPWPRWFGFHEVFHTFTILAFV
SHYVGVSLATYSLR

Specific function: Unknown

COG id: COG1272

COG function: function code R; Predicted membrane protein, hemolysin III homolog

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0073 (Hly-III) family [H]

Homologues:

Organism=Escherichia coli, GI1789266, Length=188, Percent_Identity=30.3191489361702, Blast_Score=82, Evalue=3e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004254
- InterPro:   IPR005744 [H]

Pfam domain/function: PF03006 HlyIII [H]

EC number: NA

Molecular weight: Translated: 27641; Mature: 27641

Theoretical pI: Translated: 10.40; Mature: 10.40

Prosite motif: PS00211 ABC_TRANSPORTER_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNQPMERAVDRAMDRALTGADAVRAGLDHLHEAVADLKPRLRGWLHLGIAPLTLAAGIVL
CCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHH
VALAPTTPSRVAAALFTGSALVLFTVSAIYHTGTWSPRVWAFLRRFDHANIFLLIAGSYT
EEECCCCHHHHHHHHHCCCHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCEEEEEECCCC
PFSVLLLEGTARVALLATVWSGAVLGVLFRVFWTDAPRWLYVPIYIALGWAAVFFIPAFL
CEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEHHHHHHHHHHHHHHHHHHH
DGATRLGGLGVGVATFVMIVVGGALYTVGGVVYGFKRPNPWPRWFGFHEVFHTFTILAFV
HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCCHHCCHHHHHHHHHHHHHH
SHYVGVSLATYSLR
HHHHHHHHHHEECC
>Mature Secondary Structure
MNQPMERAVDRAMDRALTGADAVRAGLDHLHEAVADLKPRLRGWLHLGIAPLTLAAGIVL
CCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHH
VALAPTTPSRVAAALFTGSALVLFTVSAIYHTGTWSPRVWAFLRRFDHANIFLLIAGSYT
EEECCCCHHHHHHHHHCCCHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCEEEEEECCCC
PFSVLLLEGTARVALLATVWSGAVLGVLFRVFWTDAPRWLYVPIYIALGWAAVFFIPAFL
CEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEHHHHHHHHHHHHHHHHHHH
DGATRLGGLGVGVATFVMIVVGGALYTVGGVVYGFKRPNPWPRWFGFHEVFHTFTILAFV
HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCCHHCCHHHHHHHHHHHHHH
SHYVGVSLATYSLR
HHHHHHHHHHEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]