| Definition | Nocardioides sp. JS614 chromosome, complete genome. |
|---|---|
| Accession | NC_008699 |
| Length | 4,985,871 |
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The map label for this gene is 119715290
Identifier: 119715290
GI number: 119715290
Start: 1106236
End: 1107102
Strand: Direct
Name: 119715290
Synonym: Noca_1050
Alternate gene names: NA
Gene position: 1106236-1107102 (Clockwise)
Preceding gene: 119715289
Following gene: 119715292
Centisome position: 22.19
GC content: 66.44
Gene sequence:
>867_bases ATGACCGGGAGCACGGCACCCCACGAGGGCGGCGCGGAGGTCTCGGACAAGCAGATGAAGCTGCGCTACGCCGGCACGTG TCGAGTCTGCGGGACTGACCTGCCCGCCCGCGCCGAGGCGATCTATGAACGCACGACCAAGTCGGTGCGATGCGTTGCGT GCCCATCCGCCCCGCCTGAGTCGGGCGAACACGAGGCCGGGGTGACAGCGGAGGCGGAAGCAACGCCTGAGTCGGGTGTT GCTGGGTCTTCTGCGCGCCGCGAGTTTGAGCGCCGCAGAGCCAAAGACGAGGAACGGCTCCGCAAGAAGTGGGGTCGCTT CGGCGGGATCGCGGCTGCGCTTTCTGACGAGCGACAGAGTACGAAGGCTTGGGAGCGAGGAGCGGTCGGCGAGGAGCTTC TCGGTGCTCGGCTCGACTCTCTGGCTTCCCGCGACGTCGCCGTGCTGCACGATCGGCGCATCCCCAACTCGAAGGCCGAC ATCGACCACATCGTCATCGTGCGCAGCGGCATCTGGGTCGTGGATGCCAAGCGCTACCAGGGGCGACCCGAACTGAAGAT CGAAGGCGGCATCCTGCGCCCCCGGGTCGAGAAGGTCCTTGTCGGCCGACGGGACTGCACGAAGCTCGTTGACGGGGTCA TCAAGCAGGTCGACCTTGTGCGTGACCTAGTGGGGGACATGCCAGTCAACGCTGCGCTCTGCTTCGTTGACGCCGACTGG CCGCTGATTGGTGGTGCCTTCTCGACCCGTGGCGTGTACGTACTCTGGCCGAAGCGTCTCGGCAAACTATTGGCCGAGGC CCCGCCGGGCGAGCTCGACGTCGCTGCTGTGCGTGAGGCAGTGGCCTCACGGTTCAAGTCAGCCTGA
Upstream 100 bases:
>100_bases AGCGGACCACCATCGACGAGGTTATCGACGCTGCTTTCGCTCACGGCGGCGCGACCAAGGATGAGTTCCGCCGCCGTTAC CTGTGGTGGGTTGAGGACGC
Downstream 100 bases:
>100_bases GCGCCGGGGGCTAGAGCTTCGCCAACTTGCCGACTGAGTCGCGCAGCGCGTCTTCCCCGGCCCGGACGTAGTGATTAAGC ACAGTTGTGAGTTTGTCGCC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 288; Mature: 287
Protein sequence:
>288_residues MTGSTAPHEGGAEVSDKQMKLRYAGTCRVCGTDLPARAEAIYERTTKSVRCVACPSAPPESGEHEAGVTAEAEATPESGV AGSSARREFERRRAKDEERLRKKWGRFGGIAAALSDERQSTKAWERGAVGEELLGARLDSLASRDVAVLHDRRIPNSKAD IDHIVIVRSGIWVVDAKRYQGRPELKIEGGILRPRVEKVLVGRRDCTKLVDGVIKQVDLVRDLVGDMPVNAALCFVDADW PLIGGAFSTRGVYVLWPKRLGKLLAEAPPGELDVAAVREAVASRFKSA
Sequences:
>Translated_288_residues MTGSTAPHEGGAEVSDKQMKLRYAGTCRVCGTDLPARAEAIYERTTKSVRCVACPSAPPESGEHEAGVTAEAEATPESGV AGSSARREFERRRAKDEERLRKKWGRFGGIAAALSDERQSTKAWERGAVGEELLGARLDSLASRDVAVLHDRRIPNSKAD IDHIVIVRSGIWVVDAKRYQGRPELKIEGGILRPRVEKVLVGRRDCTKLVDGVIKQVDLVRDLVGDMPVNAALCFVDADW PLIGGAFSTRGVYVLWPKRLGKLLAEAPPGELDVAAVREAVASRFKSA >Mature_287_residues TGSTAPHEGGAEVSDKQMKLRYAGTCRVCGTDLPARAEAIYERTTKSVRCVACPSAPPESGEHEAGVTAEAEATPESGVA GSSARREFERRRAKDEERLRKKWGRFGGIAAALSDERQSTKAWERGAVGEELLGARLDSLASRDVAVLHDRRIPNSKADI DHIVIVRSGIWVVDAKRYQGRPELKIEGGILRPRVEKVLVGRRDCTKLVDGVIKQVDLVRDLVGDMPVNAALCFVDADWP LIGGAFSTRGVYVLWPKRLGKLLAEAPPGELDVAAVREAVASRFKSA
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 31264; Mature: 31133
Theoretical pI: Translated: 8.81; Mature: 8.81
Prosite motif: PS50965 NERD
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.1 %Cys (Translated Protein) 1.0 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 2.1 %Cys (Mature Protein) 0.7 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTGSTAPHEGGAEVSDKQMKLRYAGTCRVCGTDLPARAEAIYERTTKSVRCVACPSAPPE CCCCCCCCCCCCCCCCHHEEEEECCEEEEECCCCCHHHHHHHHHHCCCEEEEECCCCCCC SGEHEAGVTAEAEATPESGVAGSSARREFERRRAKDEERLRKKWGRFGGIAAALSDERQS CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHCCHHHHHHHHHHH TKAWERGAVGEELLGARLDSLASRDVAVLHDRRIPNSKADIDHIVIVRSGIWVVDAKRYQ HHHHHHCCCHHHHHHHHHHHHHCCCCHHHHCCCCCCCCCCCCEEEEEECCEEEEECHHHC GRPELKIEGGILRPRVEKVLVGRRDCTKLVDGVIKQVDLVRDLVGDMPVNAALCFVDADW CCCCEEECCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCC PLIGGAFSTRGVYVLWPKRLGKLLAEAPPGELDVAAVREAVASRFKSA CEECCCCCCCCEEEECHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCC >Mature Secondary Structure TGSTAPHEGGAEVSDKQMKLRYAGTCRVCGTDLPARAEAIYERTTKSVRCVACPSAPPE CCCCCCCCCCCCCCCHHEEEEECCEEEEECCCCCHHHHHHHHHHCCCEEEEECCCCCCC SGEHEAGVTAEAEATPESGVAGSSARREFERRRAKDEERLRKKWGRFGGIAAALSDERQS CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHCCHHHHHHHHHHH TKAWERGAVGEELLGARLDSLASRDVAVLHDRRIPNSKADIDHIVIVRSGIWVVDAKRYQ HHHHHHCCCHHHHHHHHHHHHHCCCCHHHHCCCCCCCCCCCCEEEEEECCEEEEECHHHC GRPELKIEGGILRPRVEKVLVGRRDCTKLVDGVIKQVDLVRDLVGDMPVNAALCFVDADW CCCCEEECCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCC PLIGGAFSTRGVYVLWPKRLGKLLAEAPPGELDVAAVREAVASRFKSA CEECCCCCCCCEEEECHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA