| Definition | Nocardioides sp. JS614 chromosome, complete genome. |
|---|---|
| Accession | NC_008699 |
| Length | 4,985,871 |
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The map label for this gene is devR [H]
Identifier: 119715190
GI number: 119715190
Start: 994232
End: 994882
Strand: Direct
Name: devR [H]
Synonym: Noca_0945
Alternate gene names: 119715190
Gene position: 994232-994882 (Clockwise)
Preceding gene: 119715189
Following gene: 119715193
Centisome position: 19.94
GC content: 70.51
Gene sequence:
>651_bases ATGACCGAGGGCCCGGGGAAGATCCGCGTCTACCTCCTCGACGACCACGAGGTCGTGCGACAGGGGTTGCGCGCGCTGCT GGAGAGCTCTGGTGACATCGAGGTCGTCGGCGAGTCCGGCTCCGCGGTGGACGCCAGCAACCGGATCCCGGCGCTGCGCC CGGACGTGGCCGTGCTGGACGCGCGGCTGCCCGACGGGTCGGGGATCGAGGTGTGCCGCACCGTGCGCGCCGTCGACCCG ACCATCTCCGCGCTGATCCTGACCTCGTACGACGACGACGAGGCCCTCTTCGCGGCGATCATGGCCGGCGCCGCCGGCTA CGTGCTCAAGGAGATCAAGGGCTCCGACCTGGTCTCGGCGATCCGCCAGGTCGCGGCCGGCAACTCGCTGATCGACCCGA CGCTGACCGCGCGGGTGCTGGAGCGGGTGCGGCACCCACCGACGACCGCCCCCGAGCTGGCCGAGCTGACCGAGCAGGAG CTCAAGCTGCTCGGCTACATCGCCGAGGGCCTGACCAACCGGCAGATCGGGGAGCGGATGTACCTCGCCGAGAAGACCGT GAAGAACTACGTATCCAGCATCCTCGCGAAGCTCGGCCTGGAGCGCCGCACCCAGGCCGCGGTGCTCGCCAGCAAGCTGC TCGGCAACTGA
Upstream 100 bases:
>100_bases ACGGCGAGCAGCAGCGCACGGTCCTGTGGATCACGCACGCCGCGGCCGGACTCGACCGGGTCGACCGCGTGCTCGACCTC GGGACTGGTAGAAAAGGGGC
Downstream 100 bases:
>100_bases CCCCCTCCGGCGCTCAGCGGATCGCGCTCAGCGCAGCGGCACCCGCCACACGAACGAGGTGCCGCGCGGCTGGCGTGGGC CGAGCTCGAAGGAGCCGCCG
Product: response regulator receiver
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 216; Mature: 215
Protein sequence:
>216_residues MTEGPGKIRVYLLDDHEVVRQGLRALLESSGDIEVVGESGSAVDASNRIPALRPDVAVLDARLPDGSGIEVCRTVRAVDP TISALILTSYDDDEALFAAIMAGAAGYVLKEIKGSDLVSAIRQVAAGNSLIDPTLTARVLERVRHPPTTAPELAELTEQE LKLLGYIAEGLTNRQIGERMYLAEKTVKNYVSSILAKLGLERRTQAAVLASKLLGN
Sequences:
>Translated_216_residues MTEGPGKIRVYLLDDHEVVRQGLRALLESSGDIEVVGESGSAVDASNRIPALRPDVAVLDARLPDGSGIEVCRTVRAVDP TISALILTSYDDDEALFAAIMAGAAGYVLKEIKGSDLVSAIRQVAAGNSLIDPTLTARVLERVRHPPTTAPELAELTEQE LKLLGYIAEGLTNRQIGERMYLAEKTVKNYVSSILAKLGLERRTQAAVLASKLLGN >Mature_215_residues TEGPGKIRVYLLDDHEVVRQGLRALLESSGDIEVVGESGSAVDASNRIPALRPDVAVLDARLPDGSGIEVCRTVRAVDPT ISALILTSYDDDEALFAAIMAGAAGYVLKEIKGSDLVSAIRQVAAGNSLIDPTLTARVLERVRHPPTTAPELAELTEQEL KLLGYIAEGLTNRQIGERMYLAEKTVKNYVSSILAKLGLERRTQAAVLASKLLGN
Specific function: Member of the two-component regulatory system devR/devS (dosR/dosS) involved in onset of the dormancy response. When phosphorylated binds the promoter of at least its own and Acr (hspX) gene in response to hypoxia. Activates its own transcription under hy
COG id: COG2197
COG function: function code TK; Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain
Gene ontology:
Cell location: Cytoplasmic [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 response regulatory domain [H]
Homologues:
Organism=Escherichia coli, GI1788521, Length=205, Percent_Identity=36.0975609756098, Blast_Score=107, Evalue=7e-25, Organism=Escherichia coli, GI1788222, Length=194, Percent_Identity=31.9587628865979, Blast_Score=100, Evalue=1e-22, Organism=Escherichia coli, GI1786747, Length=197, Percent_Identity=27.4111675126904, Blast_Score=87, Evalue=9e-19, Organism=Escherichia coli, GI1787473, Length=204, Percent_Identity=31.8627450980392, Blast_Score=87, Evalue=1e-18, Organism=Escherichia coli, GI1790102, Length=201, Percent_Identity=29.8507462686567, Blast_Score=84, Evalue=6e-18, Organism=Escherichia coli, GI1788712, Length=187, Percent_Identity=28.3422459893048, Blast_Score=82, Evalue=3e-17, Organism=Escherichia coli, GI1788546, Length=202, Percent_Identity=27.2277227722772, Blast_Score=68, Evalue=4e-13, Organism=Escherichia coli, GI87082052, Length=142, Percent_Identity=31.6901408450704, Blast_Score=68, Evalue=4e-13,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR011006 - InterPro: IPR001789 - InterPro: IPR011990 - InterPro: IPR000792 - InterPro: IPR011991 [H]
Pfam domain/function: PF00196 GerE; PF00072 Response_reg [H]
EC number: NA
Molecular weight: Translated: 23103; Mature: 22972
Theoretical pI: Translated: 4.84; Mature: 4.84
Prosite motif: PS50110 RESPONSE_REGULATORY ; PS00622 HTH_LUXR_1 ; PS50043 HTH_LUXR_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 1.9 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 0.9 %Met (Mature Protein) 1.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTEGPGKIRVYLLDDHEVVRQGLRALLESSGDIEVVGESGSAVDASNRIPALRPDVAVLD CCCCCCEEEEEEECCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCHHHHC ARLPDGSGIEVCRTVRAVDPTISALILTSYDDDEALFAAIMAGAAGYVLKEIKGSDLVSA CCCCCCCCHHHHHHHHHCCHHHHEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHH IRQVAAGNSLIDPTLTARVLERVRHPPTTAPELAELTEQELKLLGYIAEGLTNRQIGERM HHHHHCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHH YLAEKTVKNYVSSILAKLGLERRTQAAVLASKLLGN HHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHCC >Mature Secondary Structure TEGPGKIRVYLLDDHEVVRQGLRALLESSGDIEVVGESGSAVDASNRIPALRPDVAVLD CCCCCEEEEEEECCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCHHHHC ARLPDGSGIEVCRTVRAVDPTISALILTSYDDDEALFAAIMAGAAGYVLKEIKGSDLVSA CCCCCCCCHHHHHHHHHCCHHHHEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHH IRQVAAGNSLIDPTLTARVLERVRHPPTTAPELAELTEQELKLLGYIAEGLTNRQIGERM HHHHHCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHH YLAEKTVKNYVSSILAKLGLERRTQAAVLASKLLGN HHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9634230; 12218036 [H]