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The map label for this gene is cydA [H]

Identifier: 119715187

GI number: 119715187

Start: 988484

End: 989938

Strand: Direct

Name: cydA [H]

Synonym: Noca_0942

Alternate gene names: 119715187

Gene position: 988484-989938 (Clockwise)

Preceding gene: 119715186

Following gene: 119715188

Centisome position: 19.83

GC content: 67.63

Gene sequence:

>1455_bases
GTGGACATCCTCGACGTCGCCCGGTGGCAGTTCGGCATCACCACCGTCTACCACTTCCTGTTCGTCCCACTGACCATCGG
CCTGACGCTGCTGGTCGCCGTCATGGAGACCAATTGGTTGCGTACGGCGCGACCGGAGTGGCTGCGGCTGGCGAAGTTCT
TCGGCAAGCTGCTGCTGATCAACTTCGCGCTCGGCCTGGTGACCGGTATCGTGCAGGAGTTCCAGTTCGGGATGAACTGG
TCGGACTACTCCCGGTTCGTCGGTGACATCTTCGGCGCACCGCTCGCCGTCGAGGCGCTGCTCGCGTTCTTCCTCGAGTC
GACGTTCCTCGGCCTCTGGATCTTCGGGTGGGACAAGCTGCCGCGCAAGCTGCACGTGGGCTGCATGTGGCTGGTCCACC
TCGGCACCCTGGCGTCGGCGTGGTTCATCCTCGCGGCCAACTCCTGGATGCAGCACCCGGTCGGCTACGAGTACAACCCC
GACACCGGGCGCGCGGAGCTCACCGACTTCTGGGCCGTGATGACCAACAAGGTCCAGCTCATCACGTTCCCGCACGTGAT
CCTGGCGGCGTACATGACGTCGGCGGCCTTCATCCTCGGCATCAGCGCCTGGCTCTACGCCAACAAGCGCTTCGAGCGGG
ACCGCTCGATGTACCGGATGGGCATCCGGATGGGGGCCTGGGTGGCGCTGGTCGCCGGCCTCGGCGTGGCCGTCAGCGGC
GACATCCAGGGCAAGATCATGACCGACGTCCAGCCCATGAAGATGGCGGCGGCCGAGGCGCTCTACCAGACCGACTCCGA
CGGCTGCGCACCGTTCTCGGTCTTCACGATCGGCACGCCGGACGGCAAGAGCGAGAAGTGGTCCCTGACCGTCCCGTGCG
TCCTGTCCTTCCTCGCCGAGGGCGACACCGACGCGACGGTCGAGGGCATCGACGACCTGCGCGCCGAGTACCAGGAGACC
TACGGCCAGGACCCGGGCGCGGCGTACTACTCCCCGGGTGACTACACGCCGTACATCCCGGTCACCTACTGGAGCTTCCG
CCTGATGATCGGGCTCGGCGCGCTGATGGCCGCCGGCGCCGCCCTGGTGCTGTGGCTGACCCGCAAGGGCCGCGCGCCGA
CCGCGCGGTGGTTCGCGCCGATGGTGCTCAGCCTCCCGGTCCTCACCGTGCTCGCGAACTCCTTCGGCTGGATCTTCACC
GAGATGGGCCGTCAGCCCTGGGCGGTGTTCGGCCTGATGACCACCGCGCACGGCGTCTCACCCGGCGTGAGCCAGCTCGA
GGCCTGGATCTCGATCGTCGTGCTGACCCTGCTGTACGCCGTGCTGGCGGTGATCGAGGTCGGGCTGCTGGTGAAGTACG
TGAGGAAGGGCGCCGACCCGTTCGAGGAGCCTCCGGACCCGACGCTGCGCGGCAGCGACGAGGACGAGGACCGACCCCTG
GCGTTCGCCTACTAA

Upstream 100 bases:

>100_bases
ACGAACGTCTCGCCACCCGTGACAAACCCGGGACTTTGGTCCCGGACCTCGGGCCTAGGGACCATGCCGGGCGGCCGACC
CTCTGGCCGAGGGTCGAAGC

Downstream 100 bases:

>100_bases
GCGAGAGACGGATCGATGGAGCTCACCACAGTCTGGTTCATTCTGATCGCCGTCCTCTGGATCGGCTACTTCACCCTCGA
GGGCTTCGACTTCGGGGTCG

Product: cytochrome bd ubiquinol oxidase subunit I

Products: NA

Alternate protein names: Cytochrome d ubiquinol oxidase subunit I [H]

Number of amino acids: Translated: 484; Mature: 484

Protein sequence:

>484_residues
MDILDVARWQFGITTVYHFLFVPLTIGLTLLVAVMETNWLRTARPEWLRLAKFFGKLLLINFALGLVTGIVQEFQFGMNW
SDYSRFVGDIFGAPLAVEALLAFFLESTFLGLWIFGWDKLPRKLHVGCMWLVHLGTLASAWFILAANSWMQHPVGYEYNP
DTGRAELTDFWAVMTNKVQLITFPHVILAAYMTSAAFILGISAWLYANKRFERDRSMYRMGIRMGAWVALVAGLGVAVSG
DIQGKIMTDVQPMKMAAAEALYQTDSDGCAPFSVFTIGTPDGKSEKWSLTVPCVLSFLAEGDTDATVEGIDDLRAEYQET
YGQDPGAAYYSPGDYTPYIPVTYWSFRLMIGLGALMAAGAALVLWLTRKGRAPTARWFAPMVLSLPVLTVLANSFGWIFT
EMGRQPWAVFGLMTTAHGVSPGVSQLEAWISIVVLTLLYAVLAVIEVGLLVKYVRKGADPFEEPPDPTLRGSDEDEDRPL
AFAY

Sequences:

>Translated_484_residues
MDILDVARWQFGITTVYHFLFVPLTIGLTLLVAVMETNWLRTARPEWLRLAKFFGKLLLINFALGLVTGIVQEFQFGMNW
SDYSRFVGDIFGAPLAVEALLAFFLESTFLGLWIFGWDKLPRKLHVGCMWLVHLGTLASAWFILAANSWMQHPVGYEYNP
DTGRAELTDFWAVMTNKVQLITFPHVILAAYMTSAAFILGISAWLYANKRFERDRSMYRMGIRMGAWVALVAGLGVAVSG
DIQGKIMTDVQPMKMAAAEALYQTDSDGCAPFSVFTIGTPDGKSEKWSLTVPCVLSFLAEGDTDATVEGIDDLRAEYQET
YGQDPGAAYYSPGDYTPYIPVTYWSFRLMIGLGALMAAGAALVLWLTRKGRAPTARWFAPMVLSLPVLTVLANSFGWIFT
EMGRQPWAVFGLMTTAHGVSPGVSQLEAWISIVVLTLLYAVLAVIEVGLLVKYVRKGADPFEEPPDPTLRGSDEDEDRPL
AFAY
>Mature_484_residues
MDILDVARWQFGITTVYHFLFVPLTIGLTLLVAVMETNWLRTARPEWLRLAKFFGKLLLINFALGLVTGIVQEFQFGMNW
SDYSRFVGDIFGAPLAVEALLAFFLESTFLGLWIFGWDKLPRKLHVGCMWLVHLGTLASAWFILAANSWMQHPVGYEYNP
DTGRAELTDFWAVMTNKVQLITFPHVILAAYMTSAAFILGISAWLYANKRFERDRSMYRMGIRMGAWVALVAGLGVAVSG
DIQGKIMTDVQPMKMAAAEALYQTDSDGCAPFSVFTIGTPDGKSEKWSLTVPCVLSFLAEGDTDATVEGIDDLRAEYQET
YGQDPGAAYYSPGDYTPYIPVTYWSFRLMIGLGALMAAGAALVLWLTRKGRAPTARWFAPMVLSLPVLTVLANSFGWIFT
EMGRQPWAVFGLMTTAHGVSPGVSQLEAWISIVVLTLLYAVLAVIEVGLLVKYVRKGADPFEEPPDPTLRGSDEDEDRPL
AFAY

Specific function: Cytochrome Oxidase Subunit. [C]

COG id: COG1271

COG function: function code C; Cytochrome bd-type quinol oxidase, subunit 1

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the cytochrome ubiquinol oxidase subunit 1 family [H]

Homologues:

Organism=Escherichia coli, GI1787212, Length=518, Percent_Identity=37.0656370656371, Blast_Score=306, Evalue=2e-84,
Organism=Escherichia coli, GI87081779, Length=504, Percent_Identity=36.3095238095238, Blast_Score=301, Evalue=5e-83,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002585 [H]

Pfam domain/function: PF01654 Bac_Ubq_Cox [H]

EC number: 1.10.3.-

Molecular weight: Translated: 53772; Mature: 53772

Theoretical pI: Translated: 4.90; Mature: 4.90

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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EECC
>Mature Secondary Structure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EECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: Fe [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Oxidoreductases; Acting on diphenols and related substances as donors; With oxygen as acceptor [C]

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8969509; 9384377 [H]