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The map label for this gene is cydB [H]

Identifier: 119715188

GI number: 119715188

Start: 989954

End: 990982

Strand: Direct

Name: cydB [H]

Synonym: Noca_0943

Alternate gene names: 119715188

Gene position: 989954-990982 (Clockwise)

Preceding gene: 119715187

Following gene: 119715189

Centisome position: 19.86

GC content: 68.51

Gene sequence:

>1029_bases
ATGGAGCTCACCACAGTCTGGTTCATTCTGATCGCCGTCCTCTGGATCGGCTACTTCACCCTCGAGGGCTTCGACTTCGG
GGTCGGCATGCTGCTGCCGGTGCTCGCCCGCAACGACCGCGAGCGGCGGCTGATGATCAACACCATCGGCCCGCACTGGG
ACGGCAACGAGGTGTGGGTGCTGACCGCGGGCGGTGCGACGTTCGCGGCCTTCCCCGAGTGGTACGCGACGCTGTTCAGC
GGCTTCTACCTGCCGCTGCTGCTGATCCTGGTCGCCCTGATCGTGCGCAACCTGGCCTTCGAGTACCGCCACCAACGCCC
GGAGCAGTCGTGGAAGGATCGCTGGGACCTCGCGATCATCATCGGGTCGTTCCTGCCCGCGCTCCTGTGGGGCGTGGCGT
TCGCGAACATCGTGCGCGGTGTGCCGATCGACGAGACGAAGGACTTCACCGGCAACCTGTTCACGCTGTTGAACCCGTTC
GGCCTGCTCGGCGGCATCGTGACGCTGCTGCTCTTCCTCACCCACGGCGCGATGTTCGTCGCGCTCAAGACCGACGGCGA
CATCCGGCTGCGGGCCCGCCGGCTGAGCGTGCAGCTCGGCCTCGGTGCGGCGGTGGCAGCCGTGGTGTTCCTGCTCTGGG
CCCAGCTCGACACCGGGAACGCCGGCTCGGCGGTGCTCTTCGTCCTCGCCGCAGCGGCCCTGGTCGGCGGCGTCCTGATG
GCCCGCACCGGGCGTGAGGGCTGGGGCTTCCTCGGCACCTTCGTCACGATCGCCCTCGCGGTCGCCGGGCTGTTCGTCGC
GCTGTTCCCCGACGTGATGCCCTCGACCACGGACGCGGCGTACTCGCTGACGGCCACGAACGCGGCCGCGACGGACTACA
CGCTCAAGGTGATGACGATCGTCGCCGCGATCTTCACCCCGCTCGTGGTCGCCTACCAGGCCTGGACGTACTGGGTCTTC
CGCAAGCGGATCTCGGAGCACCACATCCCCGAGGCCGCGCTGGAGACCGAGCCGGAGAACGTGGCGTGA

Upstream 100 bases:

>100_bases
CGCCGACCCGTTCGAGGAGCCTCCGGACCCGACGCTGCGCGGCAGCGACGAGGACGAGGACCGACCCCTGGCGTTCGCCT
ACTAAGCGAGAGACGGATCG

Downstream 100 bases:

>100_bases
GAGCGCCGTGAGGCCGGGCGACCCCCGGATCCGGCGTCAGCTCGCCCCGGCCCGACCTCAGCTCGCCGTCGTCCTGGCCG
CGGGCGTCGTGGGCAGCGTG

Product: cytochrome d ubiquinol oxidase subunit II

Products: NA

Alternate protein names: Cytochrome d ubiquinol oxidase subunit II [H]

Number of amino acids: Translated: 342; Mature: 342

Protein sequence:

>342_residues
MELTTVWFILIAVLWIGYFTLEGFDFGVGMLLPVLARNDRERRLMINTIGPHWDGNEVWVLTAGGATFAAFPEWYATLFS
GFYLPLLLILVALIVRNLAFEYRHQRPEQSWKDRWDLAIIIGSFLPALLWGVAFANIVRGVPIDETKDFTGNLFTLLNPF
GLLGGIVTLLLFLTHGAMFVALKTDGDIRLRARRLSVQLGLGAAVAAVVFLLWAQLDTGNAGSAVLFVLAAAALVGGVLM
ARTGREGWGFLGTFVTIALAVAGLFVALFPDVMPSTTDAAYSLTATNAAATDYTLKVMTIVAAIFTPLVVAYQAWTYWVF
RKRISEHHIPEAALETEPENVA

Sequences:

>Translated_342_residues
MELTTVWFILIAVLWIGYFTLEGFDFGVGMLLPVLARNDRERRLMINTIGPHWDGNEVWVLTAGGATFAAFPEWYATLFS
GFYLPLLLILVALIVRNLAFEYRHQRPEQSWKDRWDLAIIIGSFLPALLWGVAFANIVRGVPIDETKDFTGNLFTLLNPF
GLLGGIVTLLLFLTHGAMFVALKTDGDIRLRARRLSVQLGLGAAVAAVVFLLWAQLDTGNAGSAVLFVLAAAALVGGVLM
ARTGREGWGFLGTFVTIALAVAGLFVALFPDVMPSTTDAAYSLTATNAAATDYTLKVMTIVAAIFTPLVVAYQAWTYWVF
RKRISEHHIPEAALETEPENVA
>Mature_342_residues
MELTTVWFILIAVLWIGYFTLEGFDFGVGMLLPVLARNDRERRLMINTIGPHWDGNEVWVLTAGGATFAAFPEWYATLFS
GFYLPLLLILVALIVRNLAFEYRHQRPEQSWKDRWDLAIIIGSFLPALLWGVAFANIVRGVPIDETKDFTGNLFTLLNPF
GLLGGIVTLLLFLTHGAMFVALKTDGDIRLRARRLSVQLGLGAAVAAVVFLLWAQLDTGNAGSAVLFVLAAAALVGGVLM
ARTGREGWGFLGTFVTIALAVAGLFVALFPDVMPSTTDAAYSLTATNAAATDYTLKVMTIVAAIFTPLVVAYQAWTYWVF
RKRISEHHIPEAALETEPENVA

Specific function: Cytochrome D Terminal Oxidase Complex Is The Component Of The Aerobic Respiratory Chain Of E.Coli That Predominates When Cells Are Grown At Low Aeration. [C]

COG id: COG1294

COG function: function code C; Cytochrome bd-type quinol oxidase, subunit 2

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1786954, Length=364, Percent_Identity=39.010989010989, Blast_Score=251, Evalue=6e-68,
Organism=Escherichia coli, GI1787213, Length=364, Percent_Identity=34.3406593406593, Blast_Score=213, Evalue=2e-56,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003317 [H]

Pfam domain/function: PF02322 Cyto_ox_2 [H]

EC number: 1.10.3.-

Molecular weight: Translated: 37499; Mature: 37499

Theoretical pI: Translated: 5.65; Mature: 5.65

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MELTTVWFILIAVLWIGYFTLEGFDFGVGMLLPVLARNDRERRLMINTIGPHWDGNEVWV
CCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCEEEEEECCCCCCCCEEEE
LTAGGATFAAFPEWYATLFSGFYLPLLLILVALIVRNLAFEYRHQRPEQSWKDRWDLAII
EEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCHHHHH
IGSFLPALLWGVAFANIVRGVPIDETKDFTGNLFTLLNPFGLLGGIVTLLLFLTHGAMFV
HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEE
ALKTDGDIRLRARRLSVQLGLGAAVAAVVFLLWAQLDTGNAGSAVLFVLAAAALVGGVLM
EEECCCCEEEEHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHH
ARTGREGWGFLGTFVTIALAVAGLFVALFPDVMPSTTDAAYSLTATNAAATDYTLKVMTI
HCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHH
VAAIFTPLVVAYQAWTYWVFRKRISEHHIPEAALETEPENVA
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCCCCCC
>Mature Secondary Structure
MELTTVWFILIAVLWIGYFTLEGFDFGVGMLLPVLARNDRERRLMINTIGPHWDGNEVWV
CCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCEEEEEECCCCCCCCEEEE
LTAGGATFAAFPEWYATLFSGFYLPLLLILVALIVRNLAFEYRHQRPEQSWKDRWDLAII
EEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCHHHHH
IGSFLPALLWGVAFANIVRGVPIDETKDFTGNLFTLLNPFGLLGGIVTLLLFLTHGAMFV
HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEE
ALKTDGDIRLRARRLSVQLGLGAAVAAVVFLLWAQLDTGNAGSAVLFVLAAAALVGGVLM
EEECCCCEEEEHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHH
ARTGREGWGFLGTFVTIALAVAGLFVALFPDVMPSTTDAAYSLTATNAAATDYTLKVMTI
HCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHH
VAAIFTPLVVAYQAWTYWVFRKRISEHHIPEAALETEPENVA
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Oxidoreductases; Acting on diphenols and related substances as donors; With oxygen as acceptor [C]

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8969509; 9384377 [H]