| Definition | Nocardioides sp. JS614 chromosome, complete genome. |
|---|---|
| Accession | NC_008699 |
| Length | 4,985,871 |
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The map label for this gene is 119715185
Identifier: 119715185
GI number: 119715185
Start: 986574
End: 987035
Strand: Direct
Name: 119715185
Synonym: Noca_0940
Alternate gene names: NA
Gene position: 986574-987035 (Clockwise)
Preceding gene: 119715184
Following gene: 119715186
Centisome position: 19.79
GC content: 74.68
Gene sequence:
>462_bases ATGACGGCGACGGGAACGCCCGCGATCGAGGGCTGGTTCACCGCTGGGCCCGAGCCGGCGCTGCTCGGGTCCCGCTGCAC GACCTGCGGGACCGTGTTCTTCCCGCGGGTGGCGGGGGCCGCGGCGTTCTGCCGCAACCCGGCCTGCGCCGGCGAGGAGT TCGAGGAGACCGAGCTGTCCCGCCGCGGGACGATCTGGTCCTACACCGACGCGCAGTACCAGCCGCCCCCGCCGTACCTC TCCCGCACCGACCCCTACGAGCCGTTCGCGCTCGCGGCGGTCGAGCTGCCCGAGGGGTTGGTCGTGCTCGGCCAGGTCGC CGACGGGTACGGCGTCGCCGACCTGCGGGTGGGCGCCGAGGCCGAGCTGGTCGTGGAGACGCTCTACGCCGACGACTCCG GCGCGCGCCTGATCTGGCGCTGGAAGCCCGTCGCCGAGCTGGGCGAGGAGGCTGACCGGTGA
Upstream 100 bases:
>100_bases GGCTGAGTCAGTTGGCTGCGGGGTTCGGCTGCTGGCAGCCGAACCCCGAAGCTGCGTCACCGCCTATAGTGAGAACACGT TCTAGTTCTCAGGAGGGCTG
Downstream 100 bases:
>100_bases GCGCGGGCAGGGCGGTCGCAGTGCTGGGTGTCGGGATGCACCCGTGGGGCAAGTGGGGTCGCCCGTTCGTGGAGTACGGC GTGCACGCGGCCCGCGCCGC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 153; Mature: 152
Protein sequence:
>153_residues MTATGTPAIEGWFTAGPEPALLGSRCTTCGTVFFPRVAGAAAFCRNPACAGEEFEETELSRRGTIWSYTDAQYQPPPPYL SRTDPYEPFALAAVELPEGLVVLGQVADGYGVADLRVGAEAELVVETLYADDSGARLIWRWKPVAELGEEADR
Sequences:
>Translated_153_residues MTATGTPAIEGWFTAGPEPALLGSRCTTCGTVFFPRVAGAAAFCRNPACAGEEFEETELSRRGTIWSYTDAQYQPPPPYL SRTDPYEPFALAAVELPEGLVVLGQVADGYGVADLRVGAEAELVVETLYADDSGARLIWRWKPVAELGEEADR >Mature_152_residues TATGTPAIEGWFTAGPEPALLGSRCTTCGTVFFPRVAGAAAFCRNPACAGEEFEETELSRRGTIWSYTDAQYQPPPPYLS RTDPYEPFALAAVELPEGLVVLGQVADGYGVADLRVGAEAELVVETLYADDSGARLIWRWKPVAELGEEADR
Specific function: Unknown
COG id: COG1545
COG function: function code R; Predicted nucleic-acid-binding protein containing a Zn-ribbon
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 16460; Mature: 16329
Theoretical pI: Translated: 4.02; Mature: 4.02
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.6 %Cys (Translated Protein) 0.7 %Met (Translated Protein) 3.3 %Cys+Met (Translated Protein) 2.6 %Cys (Mature Protein) 0.0 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTATGTPAIEGWFTAGPEPALLGSRCTTCGTVFFPRVAGAAAFCRNPACAGEEFEETELS CCCCCCCCCCCEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHH RRGTIWSYTDAQYQPPPPYLSRTDPYEPFALAAVELPEGLVVLGQVADGYGVADLRVGAE HCCCEEEECCCCCCCCCCCCCCCCCCCCEEEEEEECCCCEEEEEEECCCCCEEEEEECCC AELVVETLYADDSGARLIWRWKPVAELGEEADR HHEEEEEEECCCCCCEEEEEECCHHHHHHHCCC >Mature Secondary Structure TATGTPAIEGWFTAGPEPALLGSRCTTCGTVFFPRVAGAAAFCRNPACAGEEFEETELS CCCCCCCCCCEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHH RRGTIWSYTDAQYQPPPPYLSRTDPYEPFALAAVELPEGLVVLGQVADGYGVADLRVGAE HCCCEEEECCCCCCCCCCCCCCCCCCCCEEEEEEECCCCEEEEEEECCCCCEEEEEECCC AELVVETLYADDSGARLIWRWKPVAELGEEADR HHEEEEEEECCCCCCEEEEEECCHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA