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The map label for this gene is ydiF [H]

Identifier: 119715127

GI number: 119715127

Start: 920042

End: 921766

Strand: Direct

Name: ydiF [H]

Synonym: Noca_0882

Alternate gene names: 119715127

Gene position: 920042-921766 (Clockwise)

Preceding gene: 119715126

Following gene: 119715128

Centisome position: 18.45

GC content: 72.17

Gene sequence:

>1725_bases
GTGGCCGGGGTGCGCTATGAGCTGCCCGACGGGCGAGTGCTGCTGGACGACGTGTCGTTCCGCGTCGGCGAGGGCGCCAA
GGTCGCGCTCGTGGGCGCGAACGGCGCCGGCAAGACCACGCTGCTGCGGATCATCACCGGCGACCTGACCCCGCACGCCG
GCGTGGTCACCCGCTCCGGCGGCCTGGGCGTGATGCGGCAGTCGGTGGGCGCCGCCCTCGGCGAGGCCCCCACGGTCGCC
GACCTGCTGCTCAGCGTGGCGCCCCCGCGGATCCGCGCGGCGGCGTACGACGTCGACGCCTGTGAGCGCACCCTCATGGA
CACCGACGACGAGAAGACGCAGATGGCCTACGCCCACGCGCTCTCGGAGTACGCCGACGCCGGCGGCTACGACCTCGAGG
TCACCTGGGACGTCTGCACGATGGCCGCGCTCGGGTTGCCGTTCGACCGCGCGAAGTACCGCGAGCTCGCCACCCTCTCC
GGTGGCGAGCAGAAGCGGCTGGTGCTGGAGTACCTCCTCCGCGGCCCCGACGAGGTGCTGCTGCTCGACGAGCCGGACAA
CTTCCTCGACGTGCCCGGCAAGATCTGGCTCGAGGGGCGCATCCGCGAGTCCGCCAAGACCGTGCTGATGATCAGCCACG
ACCGCGAGCTGCTCAACAACACCGCGACCCGGGTGGTCACCGTCGAGCTGGGGGGTGGTTCCGGGGGATCCACGGGGGCC
GGAGCCCCCCGTGTGTCCGGCAACACCGTGTGGACCCATCCGGGAGGCTTCGGCTCCTACCACCAGGCCCGGCAGGACCG
GTTCGCCCGGTTTGAGGAGCTGCGCCGGCGGTGGGACGAGGAGCACGCCAAGCTCAAGCAGCTCGTGCTGCACTACAAGA
TCAAGGCCGAGTACAACGACGGCATGGCCTCGCAGTACCGCGCCGCCCAGACCCGGCTGCGCAAGTTCGAGGAGGCCGGC
CCGCCGACCGAGCAGCCGCGGGAGCAACAGGTGTCGATGCGGCTCACGGGCGGGCGCACCGGCAAGCGCGCCGTCGTCTG
TGAGCACCTGGAGCTCACCGGACTGATGAAGCCGTTCGACCTCGAGGTCTGGTACGGCGAGCGCGTGGCCGTGCTCGGCT
CGAACGGATCGGGCAAGTCGCACTTCCTGCGGCTGCTCGCCGCGGGCGGGACCCGGCCGGACAAGGAGCACGAGCCCGTC
GGTGACGTCCACGTCGAGCCGGTCCGGCACCGGGGGATCGCGAAGCTGGGCGCACGGGTGCGACCGGGCTGGTTCGTGCA
GACCCACGACCACCCCGAGCTGGTCGGCCGCACCCTGCTGGAGATCCTGCACCGCGGCGACGCGACGCCGGACGGTCGTG
GGCGTGCCGGGATGGGCCGCGAGCAGGCCAGCCGGGTGCTCGACCGCTACGAGCTCAGCCCCGCGGCGGAGCAGCGGTTC
GAGTCGCTCAGCGGCGGTCAGCAGGCCCGGTTCCAGATCCTGCTACTCGAGCTCTCCGGCGCGACCCTGCTGCTGCTCGA
CGAGCCGACCGACAACCTCGACGTGCAGTCCGCCGAGGCCCTGGAGGAGGGGCTCGCGGCGTTCGAGGGCACCGTGCTCG
CGGTCACCCACGACCGCTGGTTCGCGCGCGGCTTCGACCGGTTCCTCGTCTACGGCGCGGACGGCCGGGTCTACGAGTCC
GACGGTCCGGTCTGGGACGAGGGCCGGGTCGAACGGGTCCGATGA

Upstream 100 bases:

>100_bases
GGTGAAGCCAGTCCTCGACTCGTTCCTCTGGGCCGAGCCGTAATCGAGGTGCCGGGCCGCACCGCGTGCAGGACAATCGT
GCGACGTGGGACACGTAGAC

Downstream 100 bases:

>100_bases
GCGAGCACCGGATCGTCGAGGTCGACCCGTTCGACCCCGGCCAGGTCGATCCCTGGCACGGCGCCTACCTGGCCGCCGAG
CTGGCCGCGCCCGAGGGCGT

Product: ABC transporter-like protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 574; Mature: 573

Protein sequence:

>574_residues
MAGVRYELPDGRVLLDDVSFRVGEGAKVALVGANGAGKTTLLRIITGDLTPHAGVVTRSGGLGVMRQSVGAALGEAPTVA
DLLLSVAPPRIRAAAYDVDACERTLMDTDDEKTQMAYAHALSEYADAGGYDLEVTWDVCTMAALGLPFDRAKYRELATLS
GGEQKRLVLEYLLRGPDEVLLLDEPDNFLDVPGKIWLEGRIRESAKTVLMISHDRELLNNTATRVVTVELGGGSGGSTGA
GAPRVSGNTVWTHPGGFGSYHQARQDRFARFEELRRRWDEEHAKLKQLVLHYKIKAEYNDGMASQYRAAQTRLRKFEEAG
PPTEQPREQQVSMRLTGGRTGKRAVVCEHLELTGLMKPFDLEVWYGERVAVLGSNGSGKSHFLRLLAAGGTRPDKEHEPV
GDVHVEPVRHRGIAKLGARVRPGWFVQTHDHPELVGRTLLEILHRGDATPDGRGRAGMGREQASRVLDRYELSPAAEQRF
ESLSGGQQARFQILLLELSGATLLLLDEPTDNLDVQSAEALEEGLAAFEGTVLAVTHDRWFARGFDRFLVYGADGRVYES
DGPVWDEGRVERVR

Sequences:

>Translated_574_residues
MAGVRYELPDGRVLLDDVSFRVGEGAKVALVGANGAGKTTLLRIITGDLTPHAGVVTRSGGLGVMRQSVGAALGEAPTVA
DLLLSVAPPRIRAAAYDVDACERTLMDTDDEKTQMAYAHALSEYADAGGYDLEVTWDVCTMAALGLPFDRAKYRELATLS
GGEQKRLVLEYLLRGPDEVLLLDEPDNFLDVPGKIWLEGRIRESAKTVLMISHDRELLNNTATRVVTVELGGGSGGSTGA
GAPRVSGNTVWTHPGGFGSYHQARQDRFARFEELRRRWDEEHAKLKQLVLHYKIKAEYNDGMASQYRAAQTRLRKFEEAG
PPTEQPREQQVSMRLTGGRTGKRAVVCEHLELTGLMKPFDLEVWYGERVAVLGSNGSGKSHFLRLLAAGGTRPDKEHEPV
GDVHVEPVRHRGIAKLGARVRPGWFVQTHDHPELVGRTLLEILHRGDATPDGRGRAGMGREQASRVLDRYELSPAAEQRF
ESLSGGQQARFQILLLELSGATLLLLDEPTDNLDVQSAEALEEGLAAFEGTVLAVTHDRWFARGFDRFLVYGADGRVYES
DGPVWDEGRVERVR
>Mature_573_residues
AGVRYELPDGRVLLDDVSFRVGEGAKVALVGANGAGKTTLLRIITGDLTPHAGVVTRSGGLGVMRQSVGAALGEAPTVAD
LLLSVAPPRIRAAAYDVDACERTLMDTDDEKTQMAYAHALSEYADAGGYDLEVTWDVCTMAALGLPFDRAKYRELATLSG
GEQKRLVLEYLLRGPDEVLLLDEPDNFLDVPGKIWLEGRIRESAKTVLMISHDRELLNNTATRVVTVELGGGSGGSTGAG
APRVSGNTVWTHPGGFGSYHQARQDRFARFEELRRRWDEEHAKLKQLVLHYKIKAEYNDGMASQYRAAQTRLRKFEEAGP
PTEQPREQQVSMRLTGGRTGKRAVVCEHLELTGLMKPFDLEVWYGERVAVLGSNGSGKSHFLRLLAAGGTRPDKEHEPVG
DVHVEPVRHRGIAKLGARVRPGWFVQTHDHPELVGRTLLEILHRGDATPDGRGRAGMGREQASRVLDRYELSPAAEQRFE
SLSGGQQARFQILLLELSGATLLLLDEPTDNLDVQSAEALEEGLAAFEGTVLAVTHDRWFARGFDRFLVYGADGRVYESD
GPVWDEGRVERVR

Specific function: Unknown

COG id: COG0488

COG function: function code R; ATPase components of ABC transporters with duplicated ATPase domains

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 ABC transporter domains [H]

Homologues:

Organism=Homo sapiens, GI148612853, Length=555, Percent_Identity=27.5675675675676, Blast_Score=138, Evalue=2e-32,
Organism=Homo sapiens, GI69354671, Length=545, Percent_Identity=24.954128440367, Blast_Score=97, Evalue=4e-20,
Organism=Homo sapiens, GI10947135, Length=545, Percent_Identity=24.954128440367, Blast_Score=97, Evalue=5e-20,
Organism=Escherichia coli, GI1787041, Length=559, Percent_Identity=27.1914132379249, Blast_Score=153, Evalue=3e-38,
Organism=Escherichia coli, GI2367384, Length=571, Percent_Identity=27.4956217162872, Blast_Score=147, Evalue=2e-36,
Organism=Escherichia coli, GI1787182, Length=556, Percent_Identity=27.5179856115108, Blast_Score=145, Evalue=8e-36,
Organism=Escherichia coli, GI1789751, Length=583, Percent_Identity=27.2727272727273, Blast_Score=141, Evalue=1e-34,
Organism=Escherichia coli, GI1786872, Length=209, Percent_Identity=30.622009569378, Blast_Score=63, Evalue=4e-11,
Organism=Caenorhabditis elegans, GI17559834, Length=577, Percent_Identity=25.4766031195841, Blast_Score=118, Evalue=8e-27,
Organism=Caenorhabditis elegans, GI17555318, Length=543, Percent_Identity=23.572744014733, Blast_Score=117, Evalue=1e-26,
Organism=Caenorhabditis elegans, GI17553372, Length=541, Percent_Identity=24.9537892791128, Blast_Score=111, Evalue=9e-25,
Organism=Saccharomyces cerevisiae, GI6321121, Length=584, Percent_Identity=25, Blast_Score=131, Evalue=4e-31,
Organism=Drosophila melanogaster, GI24666836, Length=544, Percent_Identity=27.7573529411765, Blast_Score=141, Evalue=9e-34,
Organism=Drosophila melanogaster, GI24641342, Length=546, Percent_Identity=25.6410256410256, Blast_Score=123, Evalue=3e-28,
Organism=Drosophila melanogaster, GI24642252, Length=544, Percent_Identity=24.2647058823529, Blast_Score=110, Evalue=2e-24,
Organism=Drosophila melanogaster, GI18859989, Length=544, Percent_Identity=24.2647058823529, Blast_Score=110, Evalue=2e-24,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003439
- InterPro:   IPR017871
- InterPro:   IPR003593 [H]

Pfam domain/function: PF00005 ABC_tran [H]

EC number: NA

Molecular weight: Translated: 63003; Mature: 62872

Theoretical pI: Translated: 6.00; Mature: 6.00

Prosite motif: PS50893 ABC_TRANSPORTER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAGVRYELPDGRVLLDDVSFRVGEGAKVALVGANGAGKTTLLRIITGDLTPHAGVVTRSG
CCCCEEECCCCCEEEECCCEEECCCCEEEEEECCCCCCEEEEEEEECCCCCCCCEEEECC
GLGVMRQSVGAALGEAPTVADLLLSVAPPRIRAAAYDVDACERTLMDTDDEKTQMAYAHA
CCHHHHHHHHHHHCCCCHHHHHHHHCCCCCCEEEEECHHHHHHHHCCCCCHHHHHHHHHH
LSEYADAGGYDLEVTWDVCTMAALGLPFDRAKYRELATLSGGEQKRLVLEYLLRGPDEVL
HHHHHCCCCCEEEEEHHHHHHHHHCCCCCHHHHHHHHHCCCCCHHHHHHHHHHCCCCEEE
LLDEPDNFLDVPGKIWLEGRIRESAKTVLMISHDRELLNNTATRVVTVELGGGSGGSTGA
EEECCCCCEECCCEEEEECEECCCCCEEEEEECCHHHHCCCCEEEEEEEECCCCCCCCCC
GAPRVSGNTVWTHPGGFGSYHQARQDRFARFEELRRRWDEEHAKLKQLVLHYKIKAEYND
CCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEECCC
GMASQYRAAQTRLRKFEEAGPPTEQPREQQVSMRLTGGRTGKRAVVCEHLELTGLMKPFD
CHHHHHHHHHHHHHHHHHCCCCCCCCCHHEEEEEEECCCCCCEEEEEEHHHHHCCCCCCE
LEVWYGERVAVLGSNGSGKSHFLRLLAAGGTRPDKEHEPVGDVHVEPVRHRGIAKLGARV
EEEEECCEEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHCCHHHHCCCC
RPGWFVQTHDHPELVGRTLLEILHRGDATPDGRGRAGMGREQASRVLDRYELSPAAEQRF
CCCEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHH
ESLSGGQQARFQILLLELSGATLLLLDEPTDNLDVQSAEALEEGLAAFEGTVLAVTHDRW
HHHCCCCCEEEEEEEEEECCCEEEEEECCCCCCCCCHHHHHHHHHHHHCCEEEEEECCHH
FARGFDRFLVYGADGRVYESDGPVWDEGRVERVR
HHCCCCEEEEECCCCEEECCCCCCCCCCCCCCCC
>Mature Secondary Structure 
AGVRYELPDGRVLLDDVSFRVGEGAKVALVGANGAGKTTLLRIITGDLTPHAGVVTRSG
CCCEEECCCCCEEEECCCEEECCCCEEEEEECCCCCCEEEEEEEECCCCCCCCEEEECC
GLGVMRQSVGAALGEAPTVADLLLSVAPPRIRAAAYDVDACERTLMDTDDEKTQMAYAHA
CCHHHHHHHHHHHCCCCHHHHHHHHCCCCCCEEEEECHHHHHHHHCCCCCHHHHHHHHHH
LSEYADAGGYDLEVTWDVCTMAALGLPFDRAKYRELATLSGGEQKRLVLEYLLRGPDEVL
HHHHHCCCCCEEEEEHHHHHHHHHCCCCCHHHHHHHHHCCCCCHHHHHHHHHHCCCCEEE
LLDEPDNFLDVPGKIWLEGRIRESAKTVLMISHDRELLNNTATRVVTVELGGGSGGSTGA
EEECCCCCEECCCEEEEECEECCCCCEEEEEECCHHHHCCCCEEEEEEEECCCCCCCCCC
GAPRVSGNTVWTHPGGFGSYHQARQDRFARFEELRRRWDEEHAKLKQLVLHYKIKAEYND
CCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEECCC
GMASQYRAAQTRLRKFEEAGPPTEQPREQQVSMRLTGGRTGKRAVVCEHLELTGLMKPFD
CHHHHHHHHHHHHHHHHHCCCCCCCCCHHEEEEEEECCCCCCEEEEEEHHHHHCCCCCCE
LEVWYGERVAVLGSNGSGKSHFLRLLAAGGTRPDKEHEPVGDVHVEPVRHRGIAKLGARV
EEEEECCEEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHCCHHHHCCCC
RPGWFVQTHDHPELVGRTLLEILHRGDATPDGRGRAGMGREQASRVLDRYELSPAAEQRF
CCCEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHH
ESLSGGQQARFQILLLELSGATLLLLDEPTDNLDVQSAEALEEGLAAFEGTVLAVTHDRW
HHHCCCCCEEEEEEEEEECCCEEEEEECCCCCCCCCHHHHHHHHHHHHCCEEEEEECCHH
FARGFDRFLVYGADGRVYESDGPVWDEGRVERVR
HHCCCCEEEEECCCCEEECCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9202461; 9384377 [H]