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The map label for this gene is nagC [H]

Identifier: 119715113

GI number: 119715113

Start: 906311

End: 907513

Strand: Reverse

Name: nagC [H]

Synonym: Noca_0868

Alternate gene names: 119715113

Gene position: 907513-906311 (Counterclockwise)

Preceding gene: 119715121

Following gene: 119715095

Centisome position: 18.2

GC content: 72.73

Gene sequence:

>1203_bases
ATGGATATTGTCAGCGGCACCGGGACGCGTCAAGAGCGACGAAGGAGATTTGTGACTGCCGCACCACATGCGTCGAGCGC
CGACCAGGTCCTCGACGTCCTGCTGCACCAGACGGCGCCGGTGACCCGGCCGTTCCTGGCCACCGCGTGCGGCCTGTCCC
GGCCGACGATCTTCGCCGCCATCCAGCAGTTGGAGCAGCGCGGGCTGGTGCACGCCGTCGGCCAGCAGAGCGGCACCCCG
GGGCGCTCCGCCACCCTGTACGAGGTCCCGGAAGGAGCCGGCGCCCTGGCGGCGGTCGACATCGGTGGCAGCAACCTGCG
GGTCGCGATCGCCGACCTGCGCGGGCAGCTGGTCGCCGAGCGGCACGAGCCGACCGCGCGGCCGGGCGGACCCGCCATCG
TGACGCAGGCGATCGAGCTCCTGCGGTCCACGCTCATCGCGTCACGGATGGGCGCCGCGCCGCTGCGCACGATCGCCGTG
TCCGTGCCGGGCGTGCTGGAGCACGACGGGCGGACCGTGCGCTACGCGTCGAACATCGACCAGTTCGAGCCCTTCGACTT
CGCCACACCGTTCGCGGACGCGTTCGACACCGTGGTGATGCTCGACAACAACGTCAACCTCGCGGCGATGGGCGAGCGCT
GGCGCGGCGCGGCCCGGGAGCTGAGCACCTTCGCGGTCGTGGCGGTCGGAGCGGGCATCGGTGCCGGCATCGTCCACGAG
GGCCGGGTGATGCGCGGTGCGCACGGCGCGGCCGGCGAGGTGGCGTTCCTGCCTCCGTTCGGCAAGCGTCGCAAGGTCGA
CGCGCGCGCCCACGACGAGGCGGGCGGCCTGAGCCTGCTGCACGACGCCCAGTCGCGATCGGGCTGGCACGACGACCCAC
CGACCACCGTCGAGGACCTGTTCCGGCGGGCCGCCGCCGGCGAGCGACCAGCCGTGAAGCTGGTCGAGGAGGAGTGCGCG
CGGATCGCCTCGGTGATCGCGTCGATCTGCGCGGTCATCGATCCCGAGACCGTGGTCCTCACCGGCGGCGTCGGCGACAA
CGACCGGCTGATCGCCCGCGCCGGCGAGCTCGCCGAGGCGATGATCCCGTTCCCGCCGGCCGTGATCAGGTCGGGCCTCG
GCGAGCGCGCCAGCGTGATCGGCGCGATCTACCTGGCCGCGCAGTCCGCGAAGCAGGAGTTGACGGAGACCACCAGCGGC
TGA

Upstream 100 bases:

>100_bases
ACGACGCGTCGGCCGGGGGGCGGTGATCCCGGCGAGCGAGCCCGAGACGGGTGATGTGCGCTTCATGACATCTCCATTTG
TTAGGCAGGTTGCTTATTGA

Downstream 100 bases:

>100_bases
CGACCGGGGCGATCCGACGGGGGACAGCAGCCGCGCCCCGTTGGACTAACTGAGACAGGTATGTCTAGTATCGCCACCCA
TGAGACGCCGCCTCGCCGCC

Product: ROK family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 400; Mature: 400

Protein sequence:

>400_residues
MDIVSGTGTRQERRRRFVTAAPHASSADQVLDVLLHQTAPVTRPFLATACGLSRPTIFAAIQQLEQRGLVHAVGQQSGTP
GRSATLYEVPEGAGALAAVDIGGSNLRVAIADLRGQLVAERHEPTARPGGPAIVTQAIELLRSTLIASRMGAAPLRTIAV
SVPGVLEHDGRTVRYASNIDQFEPFDFATPFADAFDTVVMLDNNVNLAAMGERWRGAARELSTFAVVAVGAGIGAGIVHE
GRVMRGAHGAAGEVAFLPPFGKRRKVDARAHDEAGGLSLLHDAQSRSGWHDDPPTTVEDLFRRAAAGERPAVKLVEEECA
RIASVIASICAVIDPETVVLTGGVGDNDRLIARAGELAEAMIPFPPAVIRSGLGERASVIGAIYLAAQSAKQELTETTSG

Sequences:

>Translated_400_residues
MDIVSGTGTRQERRRRFVTAAPHASSADQVLDVLLHQTAPVTRPFLATACGLSRPTIFAAIQQLEQRGLVHAVGQQSGTP
GRSATLYEVPEGAGALAAVDIGGSNLRVAIADLRGQLVAERHEPTARPGGPAIVTQAIELLRSTLIASRMGAAPLRTIAV
SVPGVLEHDGRTVRYASNIDQFEPFDFATPFADAFDTVVMLDNNVNLAAMGERWRGAARELSTFAVVAVGAGIGAGIVHE
GRVMRGAHGAAGEVAFLPPFGKRRKVDARAHDEAGGLSLLHDAQSRSGWHDDPPTTVEDLFRRAAAGERPAVKLVEEECA
RIASVIASICAVIDPETVVLTGGVGDNDRLIARAGELAEAMIPFPPAVIRSGLGERASVIGAIYLAAQSAKQELTETTSG
>Mature_400_residues
MDIVSGTGTRQERRRRFVTAAPHASSADQVLDVLLHQTAPVTRPFLATACGLSRPTIFAAIQQLEQRGLVHAVGQQSGTP
GRSATLYEVPEGAGALAAVDIGGSNLRVAIADLRGQLVAERHEPTARPGGPAIVTQAIELLRSTLIASRMGAAPLRTIAV
SVPGVLEHDGRTVRYASNIDQFEPFDFATPFADAFDTVVMLDNNVNLAAMGERWRGAARELSTFAVVAVGAGIGAGIVHE
GRVMRGAHGAAGEVAFLPPFGKRRKVDARAHDEAGGLSLLHDAQSRSGWHDDPPTTVEDLFRRAAAGERPAVKLVEEECA
RIASVIASICAVIDPETVVLTGGVGDNDRLIARAGELAEAMIPFPPAVIRSGLGERASVIGAIYLAAQSAKQELTETTSG

Specific function: Acts as a repressor of the nagEBACD operon and acts both as an activator and a repressor for the transcription of the glmSU operon [H]

COG id: COG1940

COG function: function code KG; Transcriptional regulator/sugar kinase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ROK (nagC/xylR) family [H]

Homologues:

Organism=Escherichia coli, GI1786891, Length=373, Percent_Identity=24.6648793565684, Blast_Score=97, Evalue=2e-21,
Organism=Escherichia coli, GI1790522, Length=260, Percent_Identity=26.1538461538462, Blast_Score=64, Evalue=2e-11,
Organism=Escherichia coli, GI1787878, Length=317, Percent_Identity=20.1892744479495, Blast_Score=64, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000835
- InterPro:   IPR000600
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01047 MarR; PF00480 ROK [H]

EC number: NA

Molecular weight: Translated: 41967; Mature: 41967

Theoretical pI: Translated: 6.36; Mature: 6.36

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDIVSGTGTRQERRRRFVTAAPHASSADQVLDVLLHQTAPVTRPFLATACGLSRPTIFAA
CCCCCCCCCHHHHHHHEEEECCCCCCHHHHHHHHHHHCCCCCHHHHHHHHCCCCHHHHHH
IQQLEQRGLVHAVGQQSGTPGRSATLYEVPEGAGALAAVDIGGSNLRVAIADLRGQLVAE
HHHHHHCCHHEECCCCCCCCCCCEEEEECCCCCCCEEEEEECCCCEEEEEEHHHHHHHHH
RHEPTARPGGPAIVTQAIELLRSTLIASRMGAAPLRTIAVSVPGVLEHDGRTVRYASNID
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHEEEECCCCEECCCCEEEEECCCC
QFEPFDFATPFADAFDTVVMLDNNVNLAAMGERWRGAARELSTFAVVAVGAGIGAGIVHE
CCCCCCCCCCHHHHCCEEEEEECCCCEEECCHHHHHHHHHHHHHHEEEECCCCCCCCCCC
GRVMRGAHGAAGEVAFLPPFGKRRKVDARAHDEAGGLSLLHDAQSRSGWHDDPPTTVEDL
CCEEECCCCCCCCEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCHHHHH
FRRAAAGERPAVKLVEEECARIASVIASICAVIDPETVVLTGGVGDNDRLIARAGELAEA
HHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHHH
MIPFPPAVIRSGLGERASVIGAIYLAAQSAKQELTETTSG
HCCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MDIVSGTGTRQERRRRFVTAAPHASSADQVLDVLLHQTAPVTRPFLATACGLSRPTIFAA
CCCCCCCCCHHHHHHHEEEECCCCCCHHHHHHHHHHHCCCCCHHHHHHHHCCCCHHHHHH
IQQLEQRGLVHAVGQQSGTPGRSATLYEVPEGAGALAAVDIGGSNLRVAIADLRGQLVAE
HHHHHHCCHHEECCCCCCCCCCCEEEEECCCCCCCEEEEEECCCCEEEEEEHHHHHHHHH
RHEPTARPGGPAIVTQAIELLRSTLIASRMGAAPLRTIAVSVPGVLEHDGRTVRYASNID
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHEEEECCCCEECCCCEEEEECCCC
QFEPFDFATPFADAFDTVVMLDNNVNLAAMGERWRGAARELSTFAVVAVGAGIGAGIVHE
CCCCCCCCCCHHHHCCEEEEEECCCCEEECCHHHHHHHHHHHHHHEEEECCCCCCCCCCC
GRVMRGAHGAAGEVAFLPPFGKRRKVDARAHDEAGGLSLLHDAQSRSGWHDDPPTTVEDL
CCEEECCCCCCCCEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCHHHHH
FRRAAAGERPAVKLVEEECARIASVIASICAVIDPETVVLTGGVGDNDRLIARAGELAEA
HHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHHH
MIPFPPAVIRSGLGERASVIGAIYLAAQSAKQELTETTSG
HCCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]