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The map label for this gene is lldR [H]

Identifier: 119715095

GI number: 119715095

Start: 888103

End: 888909

Strand: Reverse

Name: lldR [H]

Synonym: Noca_0850

Alternate gene names: 119715095

Gene position: 888909-888103 (Counterclockwise)

Preceding gene: 119715113

Following gene: 119715094

Centisome position: 17.83

GC content: 68.4

Gene sequence:

>807_bases
ATGCCGGCTGCCGCAAGTTCGGGCAGTCATCAGATGACTGTCGCGACGCTCCTGCGGCCCTCCGGGACCGGCCGGGTGGC
GGAGCGAGTGGTCGACGAGATCTGTGCCTACATCGAGTCGAATGGTCTGATGAATGGCGCCAAGCTGCCGCCGGAACGGG
TCTTCATGGAGCTCCTGGGGGTCGGCCGCTCCTCGCTGCGCGAGGCCCTGCGGGTCCTCTCCACGGTGGGCATCATCGAC
GTCCGGCACGGCGACGGCATGTACGTCGCCGCCACGGCGGCGGCGCCGGCGCTGAACCCGAAGGCGATCTTCGACGCGAC
CGAGCAGCACGCGCTGCGCAACCTGGTCGAGACCCGGCTCGGGATCGAGCTGGCCGCGGTCACCGCCGCGACGACGCGGG
CGAGCGACGACGACTTCCTCACGTTGCAGCGGATGCTCGACGACCAGGAGCTCCGGATGAGCGACGACCCGGAGTTCACC
TGGGAGCCACTCGGCTTCGAGCTCGCGGTGGTGGAGGTCAGCGGCAACACCTGGCTCTACGAGGTGGAGCTGATGCTGCG
CGACGCCTGGCTGGCACTGTCCAGCGGCCTACGCGCCACGGTCGGCCGGCACGAGGAGTGGCTGACCGAGCACCGCGCGA
TCATCGCGTCCATGCGGTCCCGCAACGTGCTGCAGGCACAACGTCTGGTGATCGCGCACCTGAGTCTCGAGCGCTTCGAG
GAAGACCTCGTGGCTCCCCCAGTCTCGCGGAAGAGCAAGTCTGTAAAGGCATCCGGCCGCCATGGCCACCAACAGGAAGG
CAAGTGA

Upstream 100 bases:

>100_bases
TCAGATCTCTGTCTCTAATATCAGCGTCGTTATGACGAACTCATCCACCAGGAACCCGCACTTCCGCGCCGAGGATCAGA
CCAGTGAGGTCGCGGCCGAG

Downstream 100 bases:

>100_bases
CATGAAGTTTGGACTGCGGCTGCCGGGGGCTGGCCCGTACGCCGGGCCGGAGGCGATCACCGCCTTCGCCCAGAAGGCCG
AGCAACTCGGCTTCGACTCC

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 268; Mature: 267

Protein sequence:

>268_residues
MPAAASSGSHQMTVATLLRPSGTGRVAERVVDEICAYIESNGLMNGAKLPPERVFMELLGVGRSSLREALRVLSTVGIID
VRHGDGMYVAATAAAPALNPKAIFDATEQHALRNLVETRLGIELAAVTAATTRASDDDFLTLQRMLDDQELRMSDDPEFT
WEPLGFELAVVEVSGNTWLYEVELMLRDAWLALSSGLRATVGRHEEWLTEHRAIIASMRSRNVLQAQRLVIAHLSLERFE
EDLVAPPVSRKSKSVKASGRHGHQQEGK

Sequences:

>Translated_268_residues
MPAAASSGSHQMTVATLLRPSGTGRVAERVVDEICAYIESNGLMNGAKLPPERVFMELLGVGRSSLREALRVLSTVGIID
VRHGDGMYVAATAAAPALNPKAIFDATEQHALRNLVETRLGIELAAVTAATTRASDDDFLTLQRMLDDQELRMSDDPEFT
WEPLGFELAVVEVSGNTWLYEVELMLRDAWLALSSGLRATVGRHEEWLTEHRAIIASMRSRNVLQAQRLVIAHLSLERFE
EDLVAPPVSRKSKSVKASGRHGHQQEGK
>Mature_267_residues
PAAASSGSHQMTVATLLRPSGTGRVAERVVDEICAYIESNGLMNGAKLPPERVFMELLGVGRSSLREALRVLSTVGIIDV
RHGDGMYVAATAAAPALNPKAIFDATEQHALRNLVETRLGIELAAVTAATTRASDDDFLTLQRMLDDQELRMSDDPEFTW
EPLGFELAVVEVSGNTWLYEVELMLRDAWLALSSGLRATVGRHEEWLTEHRAIIASMRSRNVLQAQRLVIAHLSLERFEE
DLVAPPVSRKSKSVKASGRHGHQQEGK

Specific function: May be a regulatory protein for the LCT genes [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1790032, Length=261, Percent_Identity=26.4367816091954, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI1790780, Length=201, Percent_Identity=27.363184079602, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI1789621, Length=223, Percent_Identity=24.6636771300448, Blast_Score=63, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011711
- InterPro:   IPR000524
- InterPro:   IPR011991 [H]

Pfam domain/function: PF07729 FCD; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 29405; Mature: 29274

Theoretical pI: Translated: 5.87; Mature: 5.87

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPAAASSGSHQMTVATLLRPSGTGRVAERVVDEICAYIESNGLMNGAKLPPERVFMELLG
CCCCCCCCCCEEEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHH
VGRSSLREALRVLSTVGIIDVRHGDGMYVAATAAAPALNPKAIFDATEQHALRNLVETRL
CCHHHHHHHHHHHHHHCEEEEECCCCEEEEEECCCCCCCCHHHHCCHHHHHHHHHHHHHH
GIELAAVTAATTRASDDDFLTLQRMLDDQELRMSDDPEFTWEPLGFELAVVEVSGNTWLY
CHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEEEEECCCEEEE
EVELMLRDAWLALSSGLRATVGRHEEWLTEHRAIIASMRSRNVLQAQRLVIAHLSLERFE
EHHHHHHHHHHHHHCCCHHHHCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH
EDLVAPPVSRKSKSVKASGRHGHQQEGK
HHHCCCCCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
PAAASSGSHQMTVATLLRPSGTGRVAERVVDEICAYIESNGLMNGAKLPPERVFMELLG
CCCCCCCCCEEEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHH
VGRSSLREALRVLSTVGIIDVRHGDGMYVAATAAAPALNPKAIFDATEQHALRNLVETRL
CCHHHHHHHHHHHHHHCEEEEECCCCEEEEEECCCCCCCCHHHHCCHHHHHHHHHHHHHH
GIELAAVTAATTRASDDDFLTLQRMLDDQELRMSDDPEFTWEPLGFELAVVEVSGNTWLY
CHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEEEEECCCEEEE
EVELMLRDAWLALSSGLRATVGRHEEWLTEHRAIIASMRSRNVLQAQRLVIAHLSLERFE
EHHHHHHHHHHHHHCCCHHHHCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH
EDLVAPPVSRKSKSVKASGRHGHQQEGK
HHHCCCCCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8407843; 8041620; 9278503 [H]