| Definition | Nocardioides sp. JS614 chromosome, complete genome. |
|---|---|
| Accession | NC_008699 |
| Length | 4,985,871 |
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The map label for this gene is fbiC [H]
Identifier: 119715108
GI number: 119715108
Start: 900977
End: 903535
Strand: Direct
Name: fbiC [H]
Synonym: Noca_0863
Alternate gene names: 119715108
Gene position: 900977-903535 (Clockwise)
Preceding gene: 119715107
Following gene: 119715109
Centisome position: 18.07
GC content: 72.49
Gene sequence:
>2559_bases ATGACCGCCGTCGCCGGCATGTCCCGAGCGCTCGCACGCGCGGAGTCGGCCAAGGCGCTCGACGTCGCCGAGGCCGTCGT ACTCCTGCAGGCACGCGGGGTGGACCTCGAGTCGCTCTGCCGGGCGGCCGCCACCGTGCGCGACCGTGGGCTCGACGACG CCGGGCGGACCGGGATCGTCACGTACAGCCGGAAGGTCTTCGTGCCGCTCACCCGACTGTGCCGCGACCGGTGCCACTAC TGCACGTTCGCCACGACGCCCGGACGCGTCCCGGCGCCGTTCCTGTCGCCCGACGAGGTGCTGGACATCGCCAGGGCGGG AGCCGCCCAGGGCTGCAAGGAGGCGCTGTTCACGCTGGGTGACCGGCCCGAGGATCGCTGGGACGTCGCGCGCGAGTGGC TCGAGTCGCGGGGCTACCCCGACACCCTCTCCTACGTCCGGGCGATGGCGATCCTGGTGCTCGAGGAGACCGGGCTGCTT CCGCACCTCAACCCAGGCGTGATGACCTGGCAGGAGCTCCAGCGGCTCAAGCCGGTCGCCCCGTCCATGGGGCTGATGCT CGAGACCACCGCGACGGCGCTGTTCACCGAGCCGGGCGGGTGCCACTACGGCTCACCCGACAAGGACCCCGCCGTCCGGT TGCGGGTGCTCGAGGACGCTGCTCGTAGCGCGATCCCGTTCACCACCGGGATCCTGGTCGGCATCGGCGAGACGCTGCAG GACCGTGCCGAGTCGCTGTTCGCGATCCGCCGGGTCGCTCGCCAGTACGGCGCGATCCAGGAGGTCATCGTCCAGAACTT CCGGGCGAAGCCCGACACCGCGATGAGGCGGACACGGGACGCGGATGTGGAGGAGTACCTCGCCGCGATCGCCGTCGCGC GGCTGGTCCTCGGGCCGAGGATGCGGATCCAGGTGCCACCGAACCTCTCCGACCCGCACGAGTTCGACCGGCTGCTCGGG GCCGGCGTCGACGACTGGGGCGGCGTCTCGCCGGTGACCCCCGACCACGTGAACCCCGAACGCCCCTGGCCCGAGGTCGA GCGGCTCGCGGAGCTCTCCGCCGCGGCCGGGTTCGAGCTCCGCGAGCGCCTGACGGTCCACCCCGAGCACGCCCTGGCCG GCGACCCGTGGCTCGACCCGCGGATCGTCCCGCACGTGCGCGCCCTGATCGACCCGGCCACCGGCCTGGCGGCCGCCGGT GCCCTGCCGACCGGGCGCCCCTGGCAGCAGCCGGACGTCGCGTGGGGGAGCGTGGGGCGTACGGACCTGCACGCCGAGAT CGACGTCACCGGCCGCCGGACCGACCGGCGCTCGGACTTCGACGTCGCCTACGGCGACTGGGGAGTGCTGCGCGAGCAGG TCCGGCACTCCGCACCCGCTCCGGCGCTCCCGCCGGAGGTCTCGGCTGCGCTCCGCGTCGCCGAGCGCGACCCGGGGGCC CTCTCCGACGCGCAGGCGCTGGCCCTGATGACCGCGGACGGGCCGGCACTCGACGAGCTGTGCCGGCTCGCGGACGGTCT GCGACGTGACGTCGTCGGTGACGACGTGACGTTCGTGGTCAACCGCAACATCAACTTCACCAACGTCTGCTACGTCGGCT GCCGCTTCTGTGCCTTCGCCCAGCGCGAGACGGACGCTGACGCGTACACGCTGTCGATCGACGAGGTCGGCCAGCGCGCG GAGGAGGCGTGGGCCGTCGGCGCGACCGAGGTGTGCATGCAGGGTGGGATCGACCCCAAGCTGCCCGGCACCGCGTACTT CGACCTGGCCGCGGAGGTCCGGCGACGGGCGCCCGGGTTGCACATCCACGCGTTCTCCCCGATGGAGATCGTCTCGGGTG CGGCCCGTTCCGGCCTCTCGGTCCGGGACTGGCTGATCGCCGCTCGAGACGCCGGGCTCGACACCATCCCGGGGACGGCC GCCGAGATCCTCGACGACGAGATCCGGTGGGTGCTGACGAAGGGCAAGCTCCCGGCCGACGTCTGGGTCGATGTCGTGAA GACGGCCCACAGCCTCGGCGTCCGATCCAGCGCCACGATGATGTACGGCCACGTGGACGCGCCGCACCACTGGGTCGCCC ACCTGCGGCTGCTCGCGCGGGTCCAGCGGGAGACCGGTGGCTTCACCGAGTTCGTGCCCTTGCCGTTCATCCACCAGAGC TCTCCCGTCTACCTCGCCGGCGTGGCGCGGCCCGGGCCGAGCAACCGCGACAACCGGGCGGTGCACGCGATGGCCCGGAT CCTGCTGCACGGTGCGATCGACAACATCCAGTGCTCCTGGGTCAAGCTCGGCGAGGACGGCTGCGCCGACCTGCTGCGGA GCGGCGCGAACGACATCGGCGGCACGCTGATGGAGGAGACGATCAGCCGGATGGCCGGGTCGACGTTCGGCTCGCTCAAG ACGGTCGAGCAGATGCACGGGATCGCCGCTCTGGCGGGCCGTCCCGCCAGGCAGCGGACCACGACGTACGGGCACGTGTC CGACGAGCGAGCCGAAGCGGCCCTGAGGTTCGACGGAGCCACCCGGACGCTGCTGCCGATGGTCACCAACGCCCCCTGA
Upstream 100 bases:
>100_bases AGATGGCCGGCGTGTCGGCCCGGCTCTTCGCCGGCGCGGAGGCGGCCGAAGGCGTCGCCGCGTTCACCTCCAGGCGCAGC CCGTCGTGGGTGGTGGCCCG
Downstream 100 bases:
>100_bases GATCCACCGAGAGGAACACAGATGAGCAGGCAGTCCATCGCGATCATCGGCGGCACCGGCCCGCAGGGCAGGGGCCTGGC CTACCGCCTGGCCACCAGCG
Product: FO synthase
Products: NA
Alternate protein names: 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase [H]
Number of amino acids: Translated: 852; Mature: 851
Protein sequence:
>852_residues MTAVAGMSRALARAESAKALDVAEAVVLLQARGVDLESLCRAAATVRDRGLDDAGRTGIVTYSRKVFVPLTRLCRDRCHY CTFATTPGRVPAPFLSPDEVLDIARAGAAQGCKEALFTLGDRPEDRWDVAREWLESRGYPDTLSYVRAMAILVLEETGLL PHLNPGVMTWQELQRLKPVAPSMGLMLETTATALFTEPGGCHYGSPDKDPAVRLRVLEDAARSAIPFTTGILVGIGETLQ DRAESLFAIRRVARQYGAIQEVIVQNFRAKPDTAMRRTRDADVEEYLAAIAVARLVLGPRMRIQVPPNLSDPHEFDRLLG AGVDDWGGVSPVTPDHVNPERPWPEVERLAELSAAAGFELRERLTVHPEHALAGDPWLDPRIVPHVRALIDPATGLAAAG ALPTGRPWQQPDVAWGSVGRTDLHAEIDVTGRRTDRRSDFDVAYGDWGVLREQVRHSAPAPALPPEVSAALRVAERDPGA LSDAQALALMTADGPALDELCRLADGLRRDVVGDDVTFVVNRNINFTNVCYVGCRFCAFAQRETDADAYTLSIDEVGQRA EEAWAVGATEVCMQGGIDPKLPGTAYFDLAAEVRRRAPGLHIHAFSPMEIVSGAARSGLSVRDWLIAARDAGLDTIPGTA AEILDDEIRWVLTKGKLPADVWVDVVKTAHSLGVRSSATMMYGHVDAPHHWVAHLRLLARVQRETGGFTEFVPLPFIHQS SPVYLAGVARPGPSNRDNRAVHAMARILLHGAIDNIQCSWVKLGEDGCADLLRSGANDIGGTLMEETISRMAGSTFGSLK TVEQMHGIAALAGRPARQRTTTYGHVSDERAEAALRFDGATRTLLPMVTNAP
Sequences:
>Translated_852_residues MTAVAGMSRALARAESAKALDVAEAVVLLQARGVDLESLCRAAATVRDRGLDDAGRTGIVTYSRKVFVPLTRLCRDRCHY CTFATTPGRVPAPFLSPDEVLDIARAGAAQGCKEALFTLGDRPEDRWDVAREWLESRGYPDTLSYVRAMAILVLEETGLL PHLNPGVMTWQELQRLKPVAPSMGLMLETTATALFTEPGGCHYGSPDKDPAVRLRVLEDAARSAIPFTTGILVGIGETLQ DRAESLFAIRRVARQYGAIQEVIVQNFRAKPDTAMRRTRDADVEEYLAAIAVARLVLGPRMRIQVPPNLSDPHEFDRLLG AGVDDWGGVSPVTPDHVNPERPWPEVERLAELSAAAGFELRERLTVHPEHALAGDPWLDPRIVPHVRALIDPATGLAAAG ALPTGRPWQQPDVAWGSVGRTDLHAEIDVTGRRTDRRSDFDVAYGDWGVLREQVRHSAPAPALPPEVSAALRVAERDPGA LSDAQALALMTADGPALDELCRLADGLRRDVVGDDVTFVVNRNINFTNVCYVGCRFCAFAQRETDADAYTLSIDEVGQRA EEAWAVGATEVCMQGGIDPKLPGTAYFDLAAEVRRRAPGLHIHAFSPMEIVSGAARSGLSVRDWLIAARDAGLDTIPGTA AEILDDEIRWVLTKGKLPADVWVDVVKTAHSLGVRSSATMMYGHVDAPHHWVAHLRLLARVQRETGGFTEFVPLPFIHQS SPVYLAGVARPGPSNRDNRAVHAMARILLHGAIDNIQCSWVKLGEDGCADLLRSGANDIGGTLMEETISRMAGSTFGSLK TVEQMHGIAALAGRPARQRTTTYGHVSDERAEAALRFDGATRTLLPMVTNAP >Mature_851_residues TAVAGMSRALARAESAKALDVAEAVVLLQARGVDLESLCRAAATVRDRGLDDAGRTGIVTYSRKVFVPLTRLCRDRCHYC TFATTPGRVPAPFLSPDEVLDIARAGAAQGCKEALFTLGDRPEDRWDVAREWLESRGYPDTLSYVRAMAILVLEETGLLP HLNPGVMTWQELQRLKPVAPSMGLMLETTATALFTEPGGCHYGSPDKDPAVRLRVLEDAARSAIPFTTGILVGIGETLQD RAESLFAIRRVARQYGAIQEVIVQNFRAKPDTAMRRTRDADVEEYLAAIAVARLVLGPRMRIQVPPNLSDPHEFDRLLGA GVDDWGGVSPVTPDHVNPERPWPEVERLAELSAAAGFELRERLTVHPEHALAGDPWLDPRIVPHVRALIDPATGLAAAGA LPTGRPWQQPDVAWGSVGRTDLHAEIDVTGRRTDRRSDFDVAYGDWGVLREQVRHSAPAPALPPEVSAALRVAERDPGAL SDAQALALMTADGPALDELCRLADGLRRDVVGDDVTFVVNRNINFTNVCYVGCRFCAFAQRETDADAYTLSIDEVGQRAE EAWAVGATEVCMQGGIDPKLPGTAYFDLAAEVRRRAPGLHIHAFSPMEIVSGAARSGLSVRDWLIAARDAGLDTIPGTAA EILDDEIRWVLTKGKLPADVWVDVVKTAHSLGVRSSATMMYGHVDAPHHWVAHLRLLARVQRETGGFTEFVPLPFIHQSS PVYLAGVARPGPSNRDNRAVHAMARILLHGAIDNIQCSWVKLGEDGCADLLRSGANDIGGTLMEETISRMAGSTFGSLKT VEQMHGIAALAGRPARQRTTTYGHVSDERAEAALRFDGATRTLLPMVTNAP
Specific function: Catalyzes the radical-mediated transfer of the hydroxybenzyl group from 4-hydroxyphenylpyruvate (HPP) to 5-amino- 6-ribitylamino-2,4(1H,3H)-pyrimidinedione to form 7,8-didemethyl- 8-hydroxy-5-deazariboflavin (FO) [H]
COG id: COG1060
COG function: function code HR; Thiamine biosynthesis enzyme ThiH and related uncharacterized enzymes
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: In the C-terminal section; belongs to the radical SAM superfamily. CofH family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR013785 - InterPro: IPR019940 - InterPro: IPR006638 - InterPro: IPR019939 - InterPro: IPR020050 - InterPro: IPR007197 [H]
Pfam domain/function: PF04055 Radical_SAM [H]
EC number: NA
Molecular weight: Translated: 92395; Mature: 92264
Theoretical pI: Translated: 5.89; Mature: 5.89
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 3.6 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 3.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTAVAGMSRALARAESAKALDVAEAVVLLQARGVDLESLCRAAATVRDRGLDDAGRTGIV CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCEE TYSRKVFVPLTRLCRDRCHYCTFATTPGRVPAPFLSPDEVLDIARAGAAQGCKEALFTLG EECCHHHHHHHHHHHHHCCEEEEECCCCCCCCCCCCHHHHHHHHHHCHHHHHHHHHHHCC DRPEDRWDVAREWLESRGYPDTLSYVRAMAILVLEETGLLPHLNPGVMTWQELQRLKPVA CCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCC PSMGLMLETTATALFTEPGGCHYGSPDKDPAVRLRVLEDAARSAIPFTTGILVGIGETLQ CCCCEEEEEHHHHEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHCCHHHH DRAESLFAIRRVARQYGAIQEVIVQNFRAKPDTAMRRTRDADVEEYLAAIAVARLVLGPR HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHCCCCHHHHHHHHHHHHHHHCCC MRIQVPPNLSDPHEFDRLLGAGVDDWGGVSPVTPDHVNPERPWPEVERLAELSAAAGFEL EEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCHHH RERLTVHPEHALAGDPWLDPRIVPHVRALIDPATGLAAAGALPTGRPWQQPDVAWGSVGR HHHCCCCCCCCCCCCCCCCCCHHHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCCCCCC TDLHAEIDVTGRRTDRRSDFDVAYGDWGVLREQVRHSAPAPALPPEVSAALRVAERDPGA CCCEEEEEECCCCCCCCCCCCEECCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCC LSDAQALALMTADGPALDELCRLADGLRRDVVGDDVTFVVNRNINFTNVCYVGCRFCAFA CCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHHHHH QRETDADAYTLSIDEVGQRAEEAWAVGATEVCMQGGIDPKLPGTAYFDLAAEVRRRAPGL HCCCCCCEEEEEHHHHHHHHHHHHHCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCC HIHAFSPMEIVSGAARSGLSVRDWLIAARDAGLDTIPGTAAEILDDEIRWVLTKGKLPAD EEEECCHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHEEEECCCCCHH VWVDVVKTAHSLGVRSSATMMYGHVDAPHHWVAHLRLLARVQRETGGFTEFVPLPFIHQS HHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCEECCCCCEECC SPVYLAGVARPGPSNRDNRAVHAMARILLHGAIDNIQCSWVKLGEDGCADLLRSGANDIG CCEEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEEECCHHHHHHHHCCCCHHH GTLMEETISRMAGSTFGSLKTVEQMHGIAALAGRPARQRTTTYGHVSDERAEAALRFDGA HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCHHCCCCCCCCCHHHHHHHEEECCC TRTLLPMVTNAP CHHHHHHHCCCC >Mature Secondary Structure TAVAGMSRALARAESAKALDVAEAVVLLQARGVDLESLCRAAATVRDRGLDDAGRTGIV CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCEE TYSRKVFVPLTRLCRDRCHYCTFATTPGRVPAPFLSPDEVLDIARAGAAQGCKEALFTLG EECCHHHHHHHHHHHHHCCEEEEECCCCCCCCCCCCHHHHHHHHHHCHHHHHHHHHHHCC DRPEDRWDVAREWLESRGYPDTLSYVRAMAILVLEETGLLPHLNPGVMTWQELQRLKPVA CCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCC PSMGLMLETTATALFTEPGGCHYGSPDKDPAVRLRVLEDAARSAIPFTTGILVGIGETLQ CCCCEEEEEHHHHEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHCCHHHH DRAESLFAIRRVARQYGAIQEVIVQNFRAKPDTAMRRTRDADVEEYLAAIAVARLVLGPR HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHCCCCHHHHHHHHHHHHHHHCCC MRIQVPPNLSDPHEFDRLLGAGVDDWGGVSPVTPDHVNPERPWPEVERLAELSAAAGFEL EEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCHHH RERLTVHPEHALAGDPWLDPRIVPHVRALIDPATGLAAAGALPTGRPWQQPDVAWGSVGR HHHCCCCCCCCCCCCCCCCCCHHHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCCCCCC TDLHAEIDVTGRRTDRRSDFDVAYGDWGVLREQVRHSAPAPALPPEVSAALRVAERDPGA CCCEEEEEECCCCCCCCCCCCEECCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCC LSDAQALALMTADGPALDELCRLADGLRRDVVGDDVTFVVNRNINFTNVCYVGCRFCAFA CCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHHHHH QRETDADAYTLSIDEVGQRAEEAWAVGATEVCMQGGIDPKLPGTAYFDLAAEVRRRAPGL HCCCCCCEEEEEHHHHHHHHHHHHHCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCC HIHAFSPMEIVSGAARSGLSVRDWLIAARDAGLDTIPGTAAEILDDEIRWVLTKGKLPAD EEEECCHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHEEEECCCCCHH VWVDVVKTAHSLGVRSSATMMYGHVDAPHHWVAHLRLLARVQRETGGFTEFVPLPFIHQS HHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCEECCCCCEECC SPVYLAGVARPGPSNRDNRAVHAMARILLHGAIDNIQCSWVKLGEDGCADLLRSGANDIG CCEEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEEECCHHHHHHHHCCCCHHH GTLMEETISRMAGSTFGSLKTVEQMHGIAALAGRPARQRTTTYGHVSDERAEAALRFDGA HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCHHCCCCCCCCCHHHHHHHEEECCC TRTLLPMVTNAP CHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 12000953 [H]