Definition | Nocardioides sp. JS614 chromosome, complete genome. |
---|---|
Accession | NC_008699 |
Length | 4,985,871 |
Click here to switch to the map view.
The map label for this gene is 119715033
Identifier: 119715033
GI number: 119715033
Start: 829388
End: 830023
Strand: Reverse
Name: 119715033
Synonym: Noca_0786
Alternate gene names: NA
Gene position: 830023-829388 (Counterclockwise)
Preceding gene: 119715034
Following gene: 119715032
Centisome position: 16.65
GC content: 78.77
Gene sequence:
>636_bases ATGCGCCGTGACCGCCTCGTCTCCCCTCTGCGTTCGGTACGCCGGGCCGTCCTCGCCCGGCGCCGCCCGCTCGCCGCGCT GCTGACCGCCGTGGCGGTCGCCACCGGCATCCACGCCGCGGCCGCTCCCCCGCCGCCCAGCGTCGACGTCGTCGTCGCCG CCCGGGACCTGACGGCGGGCACGGTGCTGGCGCCGGGAGACCTGCGCGCGGTCGGGTTCGCCCCCGACTCCGTGCCTGCG GGCGCCTCGGACGACGCGATCGACGCCGTCGGGCGCACCCTGGCCGCGCCGCTGCGCGCGGGCGAGCCGGTGACCGACGT CCGGGTCGTCGGCCCGGCGCTCACCGACGGCTACCCGGGACTGACCGCGGTGCCGGTGCGGCTCCCCGACGCCGGCATGG TCGACCTGCTGCGGGTCGGCGACCGGGTCGACCTGGTCGCCGCCGATCCCCAGGGCGGTGGCGCGAGCGTGGTGGCGACC GACGTCCCGGTGCTCGCCGTACCCGCTGCCGGTCCGGACGTCGGCGCGACCGGGCTACCCGGCCGGCTGGTCGTCGTCGG CGCCGAGCCCGCCGACGTGGCCCGGATCGCGGATGCCTCGGTGCGCACCTTCCTCACGATCGCCTTTCCCGGCTAG
Upstream 100 bases:
>100_bases GCCTCGTCCACCTCCTCCGACTGAAGGCCCGCGAGGCCGCCCTTGCCGGGCCCTGTGGAGAGCCGGATCACGATCCGGCG GGATCTCCTAGCGTCGCGGC
Downstream 100 bases:
>100_bases CGTGCCGACATGACCGGATTCAAGAACTTCATCCTGCGCGGGAACCTCGTCGAGCTCGCGGTCGCCTTCGTCATGGCCGC CGCGTTCGCAACCGTGGTCA
Product: SAF domain-containing protein
Products: NA
Alternate protein names: SAF Domain Protein; Flp Pilus Assembly Protein
Number of amino acids: Translated: 211; Mature: 211
Protein sequence:
>211_residues MRRDRLVSPLRSVRRAVLARRRPLAALLTAVAVATGIHAAAAPPPPSVDVVVAARDLTAGTVLAPGDLRAVGFAPDSVPA GASDDAIDAVGRTLAAPLRAGEPVTDVRVVGPALTDGYPGLTAVPVRLPDAGMVDLLRVGDRVDLVAADPQGGGASVVAT DVPVLAVPAAGPDVGATGLPGRLVVVGAEPADVARIADASVRTFLTIAFPG
Sequences:
>Translated_211_residues MRRDRLVSPLRSVRRAVLARRRPLAALLTAVAVATGIHAAAAPPPPSVDVVVAARDLTAGTVLAPGDLRAVGFAPDSVPA GASDDAIDAVGRTLAAPLRAGEPVTDVRVVGPALTDGYPGLTAVPVRLPDAGMVDLLRVGDRVDLVAADPQGGGASVVAT DVPVLAVPAAGPDVGATGLPGRLVVVGAEPADVARIADASVRTFLTIAFPG >Mature_211_residues MRRDRLVSPLRSVRRAVLARRRPLAALLTAVAVATGIHAAAAPPPPSVDVVVAARDLTAGTVLAPGDLRAVGFAPDSVPA GASDDAIDAVGRTLAAPLRAGEPVTDVRVVGPALTDGYPGLTAVPVRLPDAGMVDLLRVGDRVDLVAADPQGGGASVVAT DVPVLAVPAAGPDVGATGLPGRLVVVGAEPADVARIADASVRTFLTIAFPG
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 20990; Mature: 20990
Theoretical pI: Translated: 5.93; Mature: 5.93
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 0.9 %Met (Translated Protein) 0.9 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 0.9 %Met (Mature Protein) 0.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRRDRLVSPLRSVRRAVLARRRPLAALLTAVAVATGIHAAAAPPPPSVDVVVAARDLTAG CCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEECCCCCC TVLAPGDLRAVGFAPDSVPAGASDDAIDAVGRTLAAPLRAGEPVTDVRVVGPALTDGYPG EEECCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEECCHHCCCCCC LTAVPVRLPDAGMVDLLRVGDRVDLVAADPQGGGASVVATDVPVLAVPAAGPDVGATGLP CEEEEEECCCCCHHHHHHCCCEEEEEEECCCCCCCEEEEECCCEEEECCCCCCCCCCCCC GRLVVVGAEPADVARIADASVRTFLTIAFPG CEEEEEECCCHHHHHHHCCCEEEEEEEEECC >Mature Secondary Structure MRRDRLVSPLRSVRRAVLARRRPLAALLTAVAVATGIHAAAAPPPPSVDVVVAARDLTAG CCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEECCCCCC TVLAPGDLRAVGFAPDSVPAGASDDAIDAVGRTLAAPLRAGEPVTDVRVVGPALTDGYPG EEECCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEECCHHCCCCCC LTAVPVRLPDAGMVDLLRVGDRVDLVAADPQGGGASVVATDVPVLAVPAAGPDVGATGLP CEEEEEECCCCCHHHHHHCCCEEEEEEECCCCCCCEEEEECCCEEEECCCCCCCCCCCCC GRLVVVGAEPADVARIADASVRTFLTIAFPG CEEEEEECCCHHHHHHHCCCEEEEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA