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The map label for this gene is yomI [H]

Identifier: 119715001

GI number: 119715001

Start: 800416

End: 801291

Strand: Reverse

Name: yomI [H]

Synonym: Noca_0754

Alternate gene names: 119715001

Gene position: 801291-800416 (Counterclockwise)

Preceding gene: 119715002

Following gene: 119715000

Centisome position: 16.07

GC content: 75.11

Gene sequence:

>876_bases
ATGCGCCAGGTCGCCCCGTCCAGCGCTGCCGGAGCCCTCGGCACGCCCGGCACGGCGAGCGGGGATGCCGTCGTCGCGGC
AGCGAAGAAGTACCTCGGCGTCCCCTACGTGTGGGGCGGCACCGACCCTGCGAAGGGCCTGGACTGCTCGGGCCTCGTGC
AGCGCGCCTACCGGGACCTCGGCTACGAGCTGCCCCGCGTCTCCTATCAGCAGGCCGAGGCCGGTCGACCCGTGAGCGGC
GGCCTCGCCAACGCACAGCCCGGCGACATCCTCGCCTTCGGCTCTCCGGTCCACCATGTCGGCATCTACGTGGGCGACAA
CCAGATGATCGAGGCACCCCGGCCCGGGCTGGACGTGCGGATCGGCCCGGTCTACGAGACGCCGACCGCGATCCGGCGGG
TGGTCCCCGACGCCGGCGCGATCGCACCGGTCACCCCGGCCGGGGGCGTCGTCGCCGGCCCGGTGGCGGCCGGCGCCGCG
GCCCGCCTGGCGCCCGGGACGCCGTACGCGTCCCTGTTCGAGTCCGCCGCCCAGAAGTACGGCGTCAGCCCCGCGCTGCT
GTCCGCCGTCGCCCGCCAGGAGTCCGGCTACAACCCGCGCGCCACCAGCCCGGCCGGCGCGCAAGGGCTGATGCAGCTGA
TGCCCGGCACCGCCTCCGGGCTCGGGGTCGACAACCCCTACGACCCGACCCAGGCTGTCGACGGCGCCGCCCGGCTGCTC
AGCAGCCTGCTCGACCGCTTCGGGAGCACGCCGCTCGCGCTCGCCGCCTACAACGCCGGCCCGGGGGCCGTGCTCCGGTA
CGGCGGGGTCCCGCCCTACCCCGAGACCAAGAACTACGTCCGTTCCGTGATGTCGATGCTGGGAGCCGCCGCATGA

Upstream 100 bases:

>100_bases
CACCGACGTCACCTCGCGGATCAGCCAGATCCAGTCCCAGCTGGCCCTGCTGTCGCCACCGGCGACCAGCACCGCCACCT
CGGCCGCGTTCGCGACCTCG

Downstream 100 bases:

>100_bases
CCACCACCCCGATCGGCCCGCCGCCCGTAGCTGTCGCCGACCCGAACATCCCCGGTGCACCCGGGTCCACCGCCGACGGC
ACGACCGGGGACGCCTTCCT

Product: lytic transglycosylase catalytic subunit

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 291; Mature: 291

Protein sequence:

>291_residues
MRQVAPSSAAGALGTPGTASGDAVVAAAKKYLGVPYVWGGTDPAKGLDCSGLVQRAYRDLGYELPRVSYQQAEAGRPVSG
GLANAQPGDILAFGSPVHHVGIYVGDNQMIEAPRPGLDVRIGPVYETPTAIRRVVPDAGAIAPVTPAGGVVAGPVAAGAA
ARLAPGTPYASLFESAAQKYGVSPALLSAVARQESGYNPRATSPAGAQGLMQLMPGTASGLGVDNPYDPTQAVDGAARLL
SSLLDRFGSTPLALAAYNAGPGAVLRYGGVPPYPETKNYVRSVMSMLGAAA

Sequences:

>Translated_291_residues
MRQVAPSSAAGALGTPGTASGDAVVAAAKKYLGVPYVWGGTDPAKGLDCSGLVQRAYRDLGYELPRVSYQQAEAGRPVSG
GLANAQPGDILAFGSPVHHVGIYVGDNQMIEAPRPGLDVRIGPVYETPTAIRRVVPDAGAIAPVTPAGGVVAGPVAAGAA
ARLAPGTPYASLFESAAQKYGVSPALLSAVARQESGYNPRATSPAGAQGLMQLMPGTASGLGVDNPYDPTQAVDGAARLL
SSLLDRFGSTPLALAAYNAGPGAVLRYGGVPPYPETKNYVRSVMSMLGAAA
>Mature_291_residues
MRQVAPSSAAGALGTPGTASGDAVVAAAKKYLGVPYVWGGTDPAKGLDCSGLVQRAYRDLGYELPRVSYQQAEAGRPVSG
GLANAQPGDILAFGSPVHHVGIYVGDNQMIEAPRPGLDVRIGPVYETPTAIRRVVPDAGAIAPVTPAGGVVAGPVAAGAA
ARLAPGTPYASLFESAAQKYGVSPALLSAVARQESGYNPRATSPAGAQGLMQLMPGTASGLGVDNPYDPTQAVDGAARLL
SSLLDRFGSTPLALAAYNAGPGAVLRYGGVPPYPETKNYVRSVMSMLGAAA

Specific function: Unknown

COG id: COG0741

COG function: function code M; Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains)

Gene ontology:

Cell location: Attached To The Membrane By A Lipid Anchor [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 10 TPR repeats [H]

Homologues:

Organism=Escherichia coli, GI1788501, Length=85, Percent_Identity=48.2352941176471, Blast_Score=81, Evalue=6e-17,
Organism=Escherichia coli, GI1786421, Length=112, Percent_Identity=39.2857142857143, Blast_Score=80, Evalue=1e-16,
Organism=Escherichia coli, GI1787944, Length=103, Percent_Identity=37.8640776699029, Blast_Score=72, Evalue=3e-14,
Organism=Escherichia coli, GI87082441, Length=141, Percent_Identity=33.3333333333333, Blast_Score=70, Evalue=2e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011055
- InterPro:   IPR008258
- InterPro:   IPR016047
- InterPro:   IPR010090
- InterPro:   IPR000189 [H]

Pfam domain/function: PF01551 Peptidase_M23; PF10145 PhageMin_Tail; PF01464 SLT [H]

EC number: NA

Molecular weight: Translated: 29311; Mature: 29311

Theoretical pI: Translated: 8.79; Mature: 8.79

Prosite motif: PS00922 TRANSGLYCOSYLASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRQVAPSSAAGALGTPGTASGDAVVAAAKKYLGVPYVWGGTDPAKGLDCSGLVQRAYRDL
CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCEEECCCCCCCCCCHHHHHHHHHHHH
GYELPRVSYQQAEAGRPVSGGLANAQPGDILAFGSPVHHVGIYVGDNQMIEAPRPGLDVR
CCCCCCCCHHHHHCCCCCCCCCCCCCCCCEEEECCCCEEEEEEECCCCEECCCCCCCCEE
IGPVYETPTAIRRVVPDAGAIAPVTPAGGVVAGPVAAGAAARLAPGTPYASLFESAAQKY
ECCCCCCHHHHHHHCCCCCCCCCCCCCCCCEECHHHHCCHHHCCCCCCHHHHHHHHHHHH
GVSPALLSAVARQESGYNPRATSPAGAQGLMQLMPGTASGLGVDNPYDPTQAVDGAARLL
CCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHH
SSLLDRFGSTPLALAAYNAGPGAVLRYGGVPPYPETKNYVRSVMSMLGAAA
HHHHHHHCCCCEEEEEECCCCCCEEECCCCCCCCCHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MRQVAPSSAAGALGTPGTASGDAVVAAAKKYLGVPYVWGGTDPAKGLDCSGLVQRAYRDL
CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCEEECCCCCCCCCCHHHHHHHHHHHH
GYELPRVSYQQAEAGRPVSGGLANAQPGDILAFGSPVHHVGIYVGDNQMIEAPRPGLDVR
CCCCCCCCHHHHHCCCCCCCCCCCCCCCCEEEECCCCEEEEEEECCCCEECCCCCCCCEE
IGPVYETPTAIRRVVPDAGAIAPVTPAGGVVAGPVAAGAAARLAPGTPYASLFESAAQKY
ECCCCCCHHHHHHHCCCCCCCCCCCCCCCCEECHHHHCCHHHCCCCCCHHHHHHHHHHHH
GVSPALLSAVARQESGYNPRATSPAGAQGLMQLMPGTASGLGVDNPYDPTQAVDGAARLL
CCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHH
SSLLDRFGSTPLALAAYNAGPGAVLRYGGVPPYPETKNYVRSVMSMLGAAA
HHHHHHHCCCCEEEEEECCCCCCEEECCCCCCCCCHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]