| Definition | Nocardioides sp. JS614 chromosome, complete genome. |
|---|---|
| Accession | NC_008699 |
| Length | 4,985,871 |
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The map label for this gene is 119714923
Identifier: 119714923
GI number: 119714923
Start: 714031
End: 715389
Strand: Reverse
Name: 119714923
Synonym: Noca_0675
Alternate gene names: NA
Gene position: 715389-714031 (Counterclockwise)
Preceding gene: 119714925
Following gene: 119714922
Centisome position: 14.35
GC content: 71.67
Gene sequence:
>1359_bases GTGGCCCGAGGCGGACGCCCGGGTCGAGGAGCGCAGGGCCGGTACGCCGGCAGCCCGCCGGGCCGGCCACCCTACGATAT GGGAGTGACCGAGCCCCTGATTGACCTGTCCCGGACCGGCCTGGAGACCTTCAAAGCCGAGCAGCAGGAGGCCTATGACG CGCTCGTCGCCTCCGGGCTCAGTCTGGACCTGACCCGCGGCAAGCCGTCGGCGGAGCAGCTCGACCTCGCCGACGCGCTG CTCACCCTTCCGACGAGGACGACCACGCCGGACGGCGTGGACGCCCGCAACTACGGCGGCCTGGCCGGCATCACCGGGCT GCGCGCCATCTTCGCCGAGCTCCTCGGGCTCGAGCTGGAGCAGGTGTCGGCCCAGGGCAACTCCAGCCTGACGCTGATGA AGGACGTGCTGACCTATCTGTGGCTGCGCGGCGGTGTCGACTCCGAGCGCCCGTGGGGCCAGGAGGAGAGAGTCCGCTTC GTCTGCCCGGTGCCGGGCTACGACCGCCACTTCGCGCTCCTGGAGTGGTTCGGCATCGAGATGCTTCCGGTGCCGATGGT CGAGCACGGCCCCGACACCGACGCCGTCGCCGCCCTCGTGGCCGCCGACCCCACGGTCAAGGGCATGTGGCTCGTCCCGA CGTACTCCAACCCCACCGGACACGTGACGACCCAGGAGGTGGCCGAGCGTCTCGCCTCCATGCCGACCGCCGCCCCGGAC TTCAAGCTCTTCTGGGACAACGCCTACGCGCTGCACCACCTGTCGAGCGAGGAGACCAAGAGCGCCGACATCGTCACGCT CGCCGCCGTCGCGGGGCACCCGCACCGGCCGGTCGTGTTCGCCTCGACCTCCAAGATCACCCACGCCGGCGCCGGGGTCG CCTTCGTCGGCGGCTCGCGGGAGACCGTCGCCTGGTTCCACGAGAACCTCGGGCTCGGCTCGATCGGCCCGGACAAGGTC AACCAGCTGCGGCACCTGGAGTTCTTCGGCAGTGCCCAGGGCGTGCGCGACCACATGGCCAAGCACCGGGGCCTGCTGGC GCCGAAGTTCGCGGAGGTGGACCGGATCCTCGGCGAGCGGCTCGGCGGCCTCGGGATCGCGCAGTGGACGCACCCGCGCG GCGGCTACTTCGTGAGCCTGGACGTGCTGCCAGGCACCGCGACCCGGGTCATCGAGCTCGCCAAGGCCGCCGGTGTCGCA CTGACGCCGGCCGGCTCCGCGTACCCCTACCGCGACGACCCGGCCGACACGAACATCCGGCTGGCCCCGTCGTTCCCCAC CCTCAGCGAGGTCACGGAGGCGATGGAAGCCGTCACGGTCTGCGTGCTGCTCGCCGCCTCCGAGAAGCTCCTCGCCTGA
Upstream 100 bases:
>100_bases CGGTCGGACCGCGCAGATCGACGCCTTCTGGGAGGCCGCGCGGCAAGCCTGCGGCGACGCATGACCGTGCCGGCCGGGCA CGGTACCCGAGACGCGCCGG
Downstream 100 bases:
>100_bases GCCGCGCACCACCCGATGCGCGATCTCCACGAGCTCCCGAAGGCGCACCTGCACCTGCACTTCACCGGGTCGATGCGGCA CTCGACGCTGCTCGAGCTCG
Product: class I and II aminotransferase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 452; Mature: 451
Protein sequence:
>452_residues MARGGRPGRGAQGRYAGSPPGRPPYDMGVTEPLIDLSRTGLETFKAEQQEAYDALVASGLSLDLTRGKPSAEQLDLADAL LTLPTRTTTPDGVDARNYGGLAGITGLRAIFAELLGLELEQVSAQGNSSLTLMKDVLTYLWLRGGVDSERPWGQEERVRF VCPVPGYDRHFALLEWFGIEMLPVPMVEHGPDTDAVAALVAADPTVKGMWLVPTYSNPTGHVTTQEVAERLASMPTAAPD FKLFWDNAYALHHLSSEETKSADIVTLAAVAGHPHRPVVFASTSKITHAGAGVAFVGGSRETVAWFHENLGLGSIGPDKV NQLRHLEFFGSAQGVRDHMAKHRGLLAPKFAEVDRILGERLGGLGIAQWTHPRGGYFVSLDVLPGTATRVIELAKAAGVA LTPAGSAYPYRDDPADTNIRLAPSFPTLSEVTEAMEAVTVCVLLAASEKLLA
Sequences:
>Translated_452_residues MARGGRPGRGAQGRYAGSPPGRPPYDMGVTEPLIDLSRTGLETFKAEQQEAYDALVASGLSLDLTRGKPSAEQLDLADAL LTLPTRTTTPDGVDARNYGGLAGITGLRAIFAELLGLELEQVSAQGNSSLTLMKDVLTYLWLRGGVDSERPWGQEERVRF VCPVPGYDRHFALLEWFGIEMLPVPMVEHGPDTDAVAALVAADPTVKGMWLVPTYSNPTGHVTTQEVAERLASMPTAAPD FKLFWDNAYALHHLSSEETKSADIVTLAAVAGHPHRPVVFASTSKITHAGAGVAFVGGSRETVAWFHENLGLGSIGPDKV NQLRHLEFFGSAQGVRDHMAKHRGLLAPKFAEVDRILGERLGGLGIAQWTHPRGGYFVSLDVLPGTATRVIELAKAAGVA LTPAGSAYPYRDDPADTNIRLAPSFPTLSEVTEAMEAVTVCVLLAASEKLLA >Mature_451_residues ARGGRPGRGAQGRYAGSPPGRPPYDMGVTEPLIDLSRTGLETFKAEQQEAYDALVASGLSLDLTRGKPSAEQLDLADALL TLPTRTTTPDGVDARNYGGLAGITGLRAIFAELLGLELEQVSAQGNSSLTLMKDVLTYLWLRGGVDSERPWGQEERVRFV CPVPGYDRHFALLEWFGIEMLPVPMVEHGPDTDAVAALVAADPTVKGMWLVPTYSNPTGHVTTQEVAERLASMPTAAPDF KLFWDNAYALHHLSSEETKSADIVTLAAVAGHPHRPVVFASTSKITHAGAGVAFVGGSRETVAWFHENLGLGSIGPDKVN QLRHLEFFGSAQGVRDHMAKHRGLLAPKFAEVDRILGERLGGLGIAQWTHPRGGYFVSLDVLPGTATRVIELAKAAGVAL TPAGSAYPYRDDPADTNIRLAPSFPTLSEVTEAMEAVTVCVLLAASEKLLA
Specific function: Unknown
COG id: COG1167
COG function: function code KE; Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the class-I pyridoxal-phosphate-dependent aminotransferase family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR004839 - InterPro: IPR015424 - InterPro: IPR015421 [H]
Pfam domain/function: PF00155 Aminotran_1_2 [H]
EC number: NA
Molecular weight: Translated: 48303; Mature: 48172
Theoretical pI: Translated: 5.58; Mature: 5.58
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 2.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MARGGRPGRGAQGRYAGSPPGRPPYDMGVTEPLIDLSRTGLETFKAEQQEAYDALVASGL CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC SLDLTRGKPSAEQLDLADALLTLPTRTTTPDGVDARNYGGLAGITGLRAIFAELLGLELE EEEEECCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCHHH QVSAQGNSSLTLMKDVLTYLWLRGGVDSERPWGQEERVRFVCPVPGYDRHFALLEWFGIE HHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHCCE MLPVPMVEHGPDTDAVAALVAADPTVKGMWLVPTYSNPTGHVTTQEVAERLASMPTAAPD EECCCCCCCCCCHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHCCCCCCC FKLFWDNAYALHHLSSEETKSADIVTLAAVAGHPHRPVVFASTSKITHAGAGVAFVGGSR EEEEECCCEEEEECCCCCCCCCCEEEEEECCCCCCCCEEEECCCCEEECCCCEEEECCCC ETVAWFHENLGLGSIGPDKVNQLRHLEFFGSAQGVRDHMAKHRGLLAPKFAEVDRILGER CCHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHH LGGLGIAQWTHPRGGYFVSLDVLPGTATRVIELAKAAGVALTPAGSAYPYRDDPADTNIR HCCCEEEEEECCCCCEEEEEEECCCCHHHHHHHHHHCCEEECCCCCCCCCCCCCCCCCEE LAPSFPTLSEVTEAMEAVTVCVLLAASEKLLA EECCCCCHHHHHHHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure ARGGRPGRGAQGRYAGSPPGRPPYDMGVTEPLIDLSRTGLETFKAEQQEAYDALVASGL CCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC SLDLTRGKPSAEQLDLADALLTLPTRTTTPDGVDARNYGGLAGITGLRAIFAELLGLELE EEEEECCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCHHH QVSAQGNSSLTLMKDVLTYLWLRGGVDSERPWGQEERVRFVCPVPGYDRHFALLEWFGIE HHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHCCE MLPVPMVEHGPDTDAVAALVAADPTVKGMWLVPTYSNPTGHVTTQEVAERLASMPTAAPD EECCCCCCCCCCHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHCCCCCCC FKLFWDNAYALHHLSSEETKSADIVTLAAVAGHPHRPVVFASTSKITHAGAGVAFVGGSR EEEEECCCEEEEECCCCCCCCCCEEEEEECCCCCCCCEEEECCCCEEECCCCEEEECCCC ETVAWFHENLGLGSIGPDKVNQLRHLEFFGSAQGVRDHMAKHRGLLAPKFAEVDRILGER CCHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHH LGGLGIAQWTHPRGGYFVSLDVLPGTATRVIELAKAAGVALTPAGSAYPYRDDPADTNIR HCCCEEEEEECCCCCEEEEEEECCCCHHHHHHHHHHCCEEECCCCCCCCCCCCCCCCCEE LAPSFPTLSEVTEAMEAVTVCVLLAASEKLLA EECCCCCHHHHHHHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA