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The map label for this gene is 119386548

Identifier: 119386548

GI number: 119386548

Start: 975397

End: 977307

Strand: Direct

Name: 119386548

Synonym: Pden_3841

Alternate gene names: NA

Gene position: 975397-977307 (Clockwise)

Preceding gene: 119386547

Following gene: 119386549

Centisome position: 56.38

GC content: 57.82

Gene sequence:

>1911_bases
GTGAGCGATACTCCGACAGCCGTAGCCATTCGATATAATCCCGATCACACAGGTACTTTCACAGTGCCTGACGACGCGCT
GGAAACCCCCATCTGGTCGCGCCTGAAGCTGGCGATCCGCACGAAAAAGCTCGATCACACCGTTGCGGGCGGCGCTATCA
ATCTGTCTTGGCCAGACACTCTCGGCGTGGTGCGAGAGCTTGGCAGCAAGGCTAACCAGATAAGCCTAAATTTCCGCTTC
AGACCCGAGGGTGAGGCCGAAGGCAAGTTGCGCGCGTTCGCTGCGCAGATACGCAAGACGCGCGAGCTACGCAGTCAGAT
CACCGAAGTCCTCACCACGGATGAGATCGAAGCGCGGCTCAAGGACATGGGCTTCACCAAGCGTGAGCTCCGCGACTTCC
AGCTTCGAGACCTTTCTCATCTGCTTGCACTCAGCAACGGCGCAAATTTTTCCGTTCCTGGCGCTGGGAAGACCACGGTG
ACATTCGCGCTGCATATGTTGACGCGGCAACCTGGACATCACTTCATAGTCGTCGCGCCGAAGGCGGCCTTCCAGGCCTG
GATGGACATTGTTGATGAGTGCATGGTTGAAGATGCCCCAGACGGCGGCTCTGAACCTTTCACGCTCTTGGTCGGTTCTG
AGGATGAAACCCGCAAAACGCTTCGGTCGGGGGCGACGCGCTTCATCATGTCCTATGACATGGTAATCCGTCAGCAAGGG
TTGCTGGCTTCGCACTTCGCCACCACGCCGACCCATCTTGTACTTGATGAGGCGCACCGCATGAAGGCGGGCTGGCAATC
TCAGCGCGGCGCTTTCTTTCTTCGAACGGCAGATGACCCTGTACGGCGCGATATCCTTACAGGAACACCAATGCCGCAGG
CGGCATCCGATATGGAGTCGCAACTTGATTTTCTGTGGCCTGGACACGGTTACGGCCTAGAAATCTCGCACGGGAAATCT
CCGCGTGAAGTCCTCGGAAACCTCTACGTCCGCACGACCAAGACCGAGTTAGGCCTTCCGCCTGCCGAGCGGCACTTCAT
CGATGTCGGCATGGATTCGGGGCAACTCGCTCTTTACTCCATCGTGCGCAATGAATTCCTGCGCAACTATTCGAAGCAGA
TATCGCGCGGCATGGGTGACGCGCAGTTCCTGAAAGCACGGCGTTCGGTCATGCGCCTGCTTCAGCTTTCCGTCAATCCA
ACCCTTGCGCTCAGCGCTATGGCCAATGATGACGTCAAGGTAGACTCGGCCATTGTCGATCAGTTGCTCGACGAAGGCCA
CTCCGCGAAGATGCGGGCTGTCATGGATCATGCCTATGCACTGGCGCGGGATGGCAAGAAGTGCGTGATCTGGACGATCT
TCACCGACACGATCCACAGCTTCGTTTCGGCGCTTGCCGACCTGAATCCCGTCTACATCCATGGCGGAGTTCCGTCAGGC
CTGCCTAGTGATCCTGAAACTAGAGAGGGACGGATTCGGCGCTTCCACGAAGACCCAGGATGCTTCGTACTCGTGGCAAA
TCCAGCCGCAGCGGGTGAGGGCATAAGCCTGCACACCGTCTGCCACAATGCCATCTACGCCGACCGCAGCTACGTATCGA
CCCATTACCTCCAGTCCATCGACCGCATTCATCGCCTCGGCTTAGCGCCCGACGAAGAAACCCACATTCATATCTATCGC
TCCAAGGCACCGCCCGTCATCGGCAGCATCGACATGTCGGTCAGTCGCCGCCTTGTTGAGAAGATCCGCAACATGCAGCA
GCTCCTTGACGATCCTGATCTCCACGAGATCGCCTTTGACGAAGAAGAGGCCGCCGATCCGCTCGACTATGATGTCGAGC
TCAAGGATATAATCGACCTCATCGCGGAGATGGAGGGTACAGCACCGGACGTTCCGCCGGAGGTCGAATGA

Upstream 100 bases:

>100_bases
AATTGGATCGATCCGCAAAGGTCTCGACAAGATCGAGGCCGCGATCCAAGCGCGCCAAGTCGGTCTTGCTGCCGATGATG
ACGGGGAGGAGTAAGCCTGC

Downstream 100 bases:

>100_bases
CCGCGGCGATCTCTACCGAACGTGTCTTCTCGCTGCCGTGCTTCGAAGGACTTCGCCTGTTCCGCAAGTATCGGGCAAGT
CATCCAGAACTTCCGCTCAC

Product: helicase domain-containing protein

Products: NA

Alternate protein names: Helicase; SNF2 Family Helicase; SNF2 Family DNA/RNA Helicase; SNF2-Related Protein; Helicase Domain Protein; Helicase SNF2 Family; DNA/RNA Helicase

Number of amino acids: Translated: 636; Mature: 635

Protein sequence:

>636_residues
MSDTPTAVAIRYNPDHTGTFTVPDDALETPIWSRLKLAIRTKKLDHTVAGGAINLSWPDTLGVVRELGSKANQISLNFRF
RPEGEAEGKLRAFAAQIRKTRELRSQITEVLTTDEIEARLKDMGFTKRELRDFQLRDLSHLLALSNGANFSVPGAGKTTV
TFALHMLTRQPGHHFIVVAPKAAFQAWMDIVDECMVEDAPDGGSEPFTLLVGSEDETRKTLRSGATRFIMSYDMVIRQQG
LLASHFATTPTHLVLDEAHRMKAGWQSQRGAFFLRTADDPVRRDILTGTPMPQAASDMESQLDFLWPGHGYGLEISHGKS
PREVLGNLYVRTTKTELGLPPAERHFIDVGMDSGQLALYSIVRNEFLRNYSKQISRGMGDAQFLKARRSVMRLLQLSVNP
TLALSAMANDDVKVDSAIVDQLLDEGHSAKMRAVMDHAYALARDGKKCVIWTIFTDTIHSFVSALADLNPVYIHGGVPSG
LPSDPETREGRIRRFHEDPGCFVLVANPAAAGEGISLHTVCHNAIYADRSYVSTHYLQSIDRIHRLGLAPDEETHIHIYR
SKAPPVIGSIDMSVSRRLVEKIRNMQQLLDDPDLHEIAFDEEEAADPLDYDVELKDIIDLIAEMEGTAPDVPPEVE

Sequences:

>Translated_636_residues
MSDTPTAVAIRYNPDHTGTFTVPDDALETPIWSRLKLAIRTKKLDHTVAGGAINLSWPDTLGVVRELGSKANQISLNFRF
RPEGEAEGKLRAFAAQIRKTRELRSQITEVLTTDEIEARLKDMGFTKRELRDFQLRDLSHLLALSNGANFSVPGAGKTTV
TFALHMLTRQPGHHFIVVAPKAAFQAWMDIVDECMVEDAPDGGSEPFTLLVGSEDETRKTLRSGATRFIMSYDMVIRQQG
LLASHFATTPTHLVLDEAHRMKAGWQSQRGAFFLRTADDPVRRDILTGTPMPQAASDMESQLDFLWPGHGYGLEISHGKS
PREVLGNLYVRTTKTELGLPPAERHFIDVGMDSGQLALYSIVRNEFLRNYSKQISRGMGDAQFLKARRSVMRLLQLSVNP
TLALSAMANDDVKVDSAIVDQLLDEGHSAKMRAVMDHAYALARDGKKCVIWTIFTDTIHSFVSALADLNPVYIHGGVPSG
LPSDPETREGRIRRFHEDPGCFVLVANPAAAGEGISLHTVCHNAIYADRSYVSTHYLQSIDRIHRLGLAPDEETHIHIYR
SKAPPVIGSIDMSVSRRLVEKIRNMQQLLDDPDLHEIAFDEEEAADPLDYDVELKDIIDLIAEMEGTAPDVPPEVE
>Mature_635_residues
SDTPTAVAIRYNPDHTGTFTVPDDALETPIWSRLKLAIRTKKLDHTVAGGAINLSWPDTLGVVRELGSKANQISLNFRFR
PEGEAEGKLRAFAAQIRKTRELRSQITEVLTTDEIEARLKDMGFTKRELRDFQLRDLSHLLALSNGANFSVPGAGKTTVT
FALHMLTRQPGHHFIVVAPKAAFQAWMDIVDECMVEDAPDGGSEPFTLLVGSEDETRKTLRSGATRFIMSYDMVIRQQGL
LASHFATTPTHLVLDEAHRMKAGWQSQRGAFFLRTADDPVRRDILTGTPMPQAASDMESQLDFLWPGHGYGLEISHGKSP
REVLGNLYVRTTKTELGLPPAERHFIDVGMDSGQLALYSIVRNEFLRNYSKQISRGMGDAQFLKARRSVMRLLQLSVNPT
LALSAMANDDVKVDSAIVDQLLDEGHSAKMRAVMDHAYALARDGKKCVIWTIFTDTIHSFVSALADLNPVYIHGGVPSGL
PSDPETREGRIRRFHEDPGCFVLVANPAAAGEGISLHTVCHNAIYADRSYVSTHYLQSIDRIHRLGLAPDEETHIHIYRS
KAPPVIGSIDMSVSRRLVEKIRNMQQLLDDPDLHEIAFDEEEAADPLDYDVELKDIIDLIAEMEGTAPDVPPEVE

Specific function: Unknown

COG id: COG0553

COG function: function code KL; Superfamily II DNA/RNA helicases, SNF2 family

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 70699; Mature: 70568

Theoretical pI: Translated: 5.92; Mature: 5.92

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSDTPTAVAIRYNPDHTGTFTVPDDALETPIWSRLKLAIRTKKLDHTVAGGAINLSWPDT
CCCCCCEEEEEECCCCCEEEECCCHHHCCCHHHHHHHHHHHHHHCCEECCCEEEECCCHH
LGVVRELGSKANQISLNFRFRPEGEAEGKLRAFAAQIRKTRELRSQITEVLTTDEIEARL
HHHHHHHCCCCCEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KDMGFTKRELRDFQLRDLSHLLALSNGANFSVPGAGKTTVTFALHMLTRQPGHHFIVVAP
HHCCCCHHHHHHHHHHHHHHHHHHCCCCCEECCCCCCHHHHHHHHHHHCCCCCEEEEECC
KAAFQAWMDIVDECMVEDAPDGGSEPFTLLVGSEDETRKTLRSGATRFIMSYDMVIRQQG
HHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCHHHHHHHHHCHHHHHHHHHHHHHHCC
LLASHFATTPTHLVLDEAHRMKAGWQSQRGAFFLRTADDPVRRDILTGTPMPQAASDMES
CHHHHHCCCCHHHHHHHHHHHHCCCCCCCCEEEEECCCCHHHHHHHCCCCCCHHHHHHHH
QLDFLWPGHGYGLEISHGKSPREVLGNLYVRTTKTELGLPPAERHFIDVGMDSGQLALYS
HCCEECCCCCCCEEECCCCCHHHHHCCEEEEEECHHCCCCCCCCEEEEECCCCCCHHHHH
IVRNEFLRNYSKQISRGMGDAQFLKARRSVMRLLQLSVNPTLALSAMANDDVKVDSAIVD
HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHH
QLLDEGHSAKMRAVMDHAYALARDGKKCVIWTIFTDTIHSFVSALADLNPVYIHGGVPSG
HHHCCCCCHHHHHHHHHHHHHHCCCCEEEEEEEHHHHHHHHHHHHHCCCCEEEECCCCCC
LPSDPETREGRIRRFHEDPGCFVLVANPAAAGEGISLHTVCHNAIYADRSYVSTHYLQSI
CCCCCCCCCCHHHEEECCCCEEEEEECCCCCCCCCEEHHHHHHHHHCCHHHHHHHHHHHH
DRIHRLGLAPDEETHIHIYRSKAPPVIGSIDMSVSRRLVEKIRNMQQLLDDPDLHEIAFD
HHHHHCCCCCCCCCEEEEEECCCCCEEEECCHHHHHHHHHHHHHHHHHHCCCCCHHCCCC
EEEAADPLDYDVELKDIIDLIAEMEGTAPDVPPEVE
CHHCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCC
>Mature Secondary Structure 
SDTPTAVAIRYNPDHTGTFTVPDDALETPIWSRLKLAIRTKKLDHTVAGGAINLSWPDT
CCCCCEEEEEECCCCCEEEECCCHHHCCCHHHHHHHHHHHHHHCCEECCCEEEECCCHH
LGVVRELGSKANQISLNFRFRPEGEAEGKLRAFAAQIRKTRELRSQITEVLTTDEIEARL
HHHHHHHCCCCCEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KDMGFTKRELRDFQLRDLSHLLALSNGANFSVPGAGKTTVTFALHMLTRQPGHHFIVVAP
HHCCCCHHHHHHHHHHHHHHHHHHCCCCCEECCCCCCHHHHHHHHHHHCCCCCEEEEECC
KAAFQAWMDIVDECMVEDAPDGGSEPFTLLVGSEDETRKTLRSGATRFIMSYDMVIRQQG
HHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCHHHHHHHHHCHHHHHHHHHHHHHHCC
LLASHFATTPTHLVLDEAHRMKAGWQSQRGAFFLRTADDPVRRDILTGTPMPQAASDMES
CHHHHHCCCCHHHHHHHHHHHHCCCCCCCCEEEEECCCCHHHHHHHCCCCCCHHHHHHHH
QLDFLWPGHGYGLEISHGKSPREVLGNLYVRTTKTELGLPPAERHFIDVGMDSGQLALYS
HCCEECCCCCCCEEECCCCCHHHHHCCEEEEEECHHCCCCCCCCEEEEECCCCCCHHHHH
IVRNEFLRNYSKQISRGMGDAQFLKARRSVMRLLQLSVNPTLALSAMANDDVKVDSAIVD
HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHH
QLLDEGHSAKMRAVMDHAYALARDGKKCVIWTIFTDTIHSFVSALADLNPVYIHGGVPSG
HHHCCCCCHHHHHHHHHHHHHHCCCCEEEEEEEHHHHHHHHHHHHHCCCCEEEECCCCCC
LPSDPETREGRIRRFHEDPGCFVLVANPAAAGEGISLHTVCHNAIYADRSYVSTHYLQSI
CCCCCCCCCCHHHEEECCCCEEEEEECCCCCCCCCEEHHHHHHHHHCCHHHHHHHHHHHH
DRIHRLGLAPDEETHIHIYRSKAPPVIGSIDMSVSRRLVEKIRNMQQLLDDPDLHEIAFD
HHHHHCCCCCCCCCEEEEEECCCCCEEEECCHHHHHHHHHHHHHHHHHHCCCCCHHCCCC
EEEAADPLDYDVELKDIIDLIAEMEGTAPDVPPEVE
CHHCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA