Definition Paracoccus denitrificans PD1222 chromosome 2, complete sequence.
Accession NC_008687
Length 1,730,097

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The map label for this gene is 119386547

Identifier: 119386547

GI number: 119386547

Start: 974059

End: 975390

Strand: Direct

Name: 119386547

Synonym: Pden_3840

Alternate gene names: NA

Gene position: 974059-975390 (Clockwise)

Preceding gene: 119386546

Following gene: 119386548

Centisome position: 56.3

GC content: 56.68

Gene sequence:

>1332_bases
GTGACCTACAAAATCAATCTGACACCCCGAGCAGAGCGCGAGGCTATGATCGCCAAGAGGCGAGAGGCGTCGGATGAATT
CGGCGAAACTATTTTTGATTTTCGCAGCGACAAATTCACGCCCAAGGTGATTTCCTTGCCCATCGACGTTCCCGTGTACC
GCATGGAAAACTGCCGCACGTTCAGCGCGCAGCAGACGGAGATCGCCCGTGAAGGCCTGGCCAAGGACTTCTTCGAGAAG
GGTCAGGAGCTGACCACCGCTCAGCAGGCGCAGCACGAAATCCTGGCGCGGCTCGCCAAGCAGGGCACCGACTCTGTTAC
CCCAATCATCTCGGTTCTGGAAAAGGACGGCCAACGCGAGACGATCCTCATCACCAGCACAGGTGTTGTCGTTAACGGCA
ACCGACGACTTGCCGCGATGCGCGAGCTCATGAAGCGTAAGGATGGATCGCTTGATGATCGCTTCACCAACATCAAGTGT
GCCGTTTTACCGCCAGACGTTACGCGAGACGAAATCGACGATATCGAAGCCGATCTGCAAGCGCGGCCTCAAACGAAGCT
CGACTATGACTGGATCGGCGATGCAAGGCTGATCCGCCGCCAGGTCGGGAAGAACAGATCCACGAAGGAGGTCGCTGACC
GCCTTCGCCGCAGCAAGACCGACATCGAAAACGTCCTGCAAGCGCTCGATGAAGCAGACTTGTACCTCAGCGAGTGGGTC
AAGAAGCCGGGAGAATACGACCTGCTTCAGGACGGGCAGCAGATATTTGGGGATCTCCCCAAAGCTATCGCCAAGAAGGA
CGCGAACCTTCAGAACGCAAGCCGCGCGATTGCGTGGTGTCTCTATGAGAACCGCGACAGGATTAGCGGGCGTGTCTACC
GCTTTAATGCGGCGTTCGGCAAGCTGGCACCCCAAGTGCTGGAAATTATGGAAGATCAGCTTGAGCTGCCCGCCGACGAT
GATGACGATCAGGTCGATGATGATGACTTCGCCATCGATATCGACAGTGACGGCGATAGCAAAGACTACACGCCCATTAT
CGAGGTTTTGCGGGACGAAGACACGAGGGACGAAGCGATCACCACTTTGATCGAAGCCTGCGAGACCGCCATTGAGCTGG
ACAAAGGTCAGAAGAACGAAGAAGCCGCGCTAAAGGCGCTGGCGCAGGTCAACTCCAAGATCACGGGCATCGACATAAGT
TCCGCAGGAACGCCTACTTTGCCAGCCATCCTCAAGCAAATTGGATCGATCCGCAAAGGTCTCGACAAGATCGAGGCCGC
GATCCAAGCGCGCCAAGTCGGTCTTGCTGCCGATGATGACGGGGAGGAGTAA

Upstream 100 bases:

>100_bases
TCGCCAACGCCGAGCGCGTTATCAAAGAGCTTGAGCTCTTCGACCGTGTAATCACCGTGCCCATCCTCGTGGTCGCGTTC
GAGTAAGAAGGGGGACGCCA

Downstream 100 bases:

>100_bases
GCCTGCGTGAGCGATACTCCGACAGCCGTAGCCATTCGATATAATCCCGATCACACAGGTACTTTCACAGTGCCTGACGA
CGCGCTGGAAACCCCCATCT

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 443; Mature: 442

Protein sequence:

>443_residues
MTYKINLTPRAEREAMIAKRREASDEFGETIFDFRSDKFTPKVISLPIDVPVYRMENCRTFSAQQTEIAREGLAKDFFEK
GQELTTAQQAQHEILARLAKQGTDSVTPIISVLEKDGQRETILITSTGVVVNGNRRLAAMRELMKRKDGSLDDRFTNIKC
AVLPPDVTRDEIDDIEADLQARPQTKLDYDWIGDARLIRRQVGKNRSTKEVADRLRRSKTDIENVLQALDEADLYLSEWV
KKPGEYDLLQDGQQIFGDLPKAIAKKDANLQNASRAIAWCLYENRDRISGRVYRFNAAFGKLAPQVLEIMEDQLELPADD
DDDQVDDDDFAIDIDSDGDSKDYTPIIEVLRDEDTRDEAITTLIEACETAIELDKGQKNEEAALKALAQVNSKITGIDIS
SAGTPTLPAILKQIGSIRKGLDKIEAAIQARQVGLAADDDGEE

Sequences:

>Translated_443_residues
MTYKINLTPRAEREAMIAKRREASDEFGETIFDFRSDKFTPKVISLPIDVPVYRMENCRTFSAQQTEIAREGLAKDFFEK
GQELTTAQQAQHEILARLAKQGTDSVTPIISVLEKDGQRETILITSTGVVVNGNRRLAAMRELMKRKDGSLDDRFTNIKC
AVLPPDVTRDEIDDIEADLQARPQTKLDYDWIGDARLIRRQVGKNRSTKEVADRLRRSKTDIENVLQALDEADLYLSEWV
KKPGEYDLLQDGQQIFGDLPKAIAKKDANLQNASRAIAWCLYENRDRISGRVYRFNAAFGKLAPQVLEIMEDQLELPADD
DDDQVDDDDFAIDIDSDGDSKDYTPIIEVLRDEDTRDEAITTLIEACETAIELDKGQKNEEAALKALAQVNSKITGIDIS
SAGTPTLPAILKQIGSIRKGLDKIEAAIQARQVGLAADDDGEE
>Mature_442_residues
TYKINLTPRAEREAMIAKRREASDEFGETIFDFRSDKFTPKVISLPIDVPVYRMENCRTFSAQQTEIAREGLAKDFFEKG
QELTTAQQAQHEILARLAKQGTDSVTPIISVLEKDGQRETILITSTGVVVNGNRRLAAMRELMKRKDGSLDDRFTNIKCA
VLPPDVTRDEIDDIEADLQARPQTKLDYDWIGDARLIRRQVGKNRSTKEVADRLRRSKTDIENVLQALDEADLYLSEWVK
KPGEYDLLQDGQQIFGDLPKAIAKKDANLQNASRAIAWCLYENRDRISGRVYRFNAAFGKLAPQVLEIMEDQLELPADDD
DDQVDDDDFAIDIDSDGDSKDYTPIIEVLRDEDTRDEAITTLIEACETAIELDKGQKNEEAALKALAQVNSKITGIDISS
AGTPTLPAILKQIGSIRKGLDKIEAAIQARQVGLAADDDGEE

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 49653; Mature: 49522

Theoretical pI: Translated: 4.41; Mature: 4.41

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTYKINLTPRAEREAMIAKRREASDEFGETIFDFRSDKFTPKVISLPIDVPVYRMENCRT
CEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCHHHHCCCCC
FSAQQTEIAREGLAKDFFEKGQELTTAQQAQHEILARLAKQGTDSVTPIISVLEKDGQRE
CCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCC
TILITSTGVVVNGNRRLAAMRELMKRKDGSLDDRFTNIKCAVLPPDVTRDEIDDIEADLQ
EEEEEECCEEEECCCHHHHHHHHHHHCCCCCCCHHCCEEEEEECCCCCHHHHHHHHHHHH
ARPQTKLDYDWIGDARLIRRQVGKNRSTKEVADRLRRSKTDIENVLQALDEADLYLSEWV
CCCCCCCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KKPGEYDLLQDGQQIFGDLPKAIAKKDANLQNASRAIAWCLYENRDRISGRVYRFNAAFG
CCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCEEEEEECHHH
KLAPQVLEIMEDQLELPADDDDDQVDDDDFAIDIDSDGDSKDYTPIIEVLRDEDTRDEAI
HHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCCCCCHHHHHHHCCCCCHHHHH
TTLIEACETAIELDKGQKNEEAALKALAQVNSKITGIDISSAGTPTLPAILKQIGSIRKG
HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCEEEEEECCCCCCCHHHHHHHHHHHHHH
LDKIEAAIQARQVGLAADDDGEE
HHHHHHHHHHHHHCCCCCCCCCC
>Mature Secondary Structure 
TYKINLTPRAEREAMIAKRREASDEFGETIFDFRSDKFTPKVISLPIDVPVYRMENCRT
EEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCHHHHCCCCC
FSAQQTEIAREGLAKDFFEKGQELTTAQQAQHEILARLAKQGTDSVTPIISVLEKDGQRE
CCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCC
TILITSTGVVVNGNRRLAAMRELMKRKDGSLDDRFTNIKCAVLPPDVTRDEIDDIEADLQ
EEEEEECCEEEECCCHHHHHHHHHHHCCCCCCCHHCCEEEEEECCCCCHHHHHHHHHHHH
ARPQTKLDYDWIGDARLIRRQVGKNRSTKEVADRLRRSKTDIENVLQALDEADLYLSEWV
CCCCCCCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KKPGEYDLLQDGQQIFGDLPKAIAKKDANLQNASRAIAWCLYENRDRISGRVYRFNAAFG
CCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCEEEEEECHHH
KLAPQVLEIMEDQLELPADDDDDQVDDDDFAIDIDSDGDSKDYTPIIEVLRDEDTRDEAI
HHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCCCCCHHHHHHHCCCCCHHHHH
TTLIEACETAIELDKGQKNEEAALKALAQVNSKITGIDISSAGTPTLPAILKQIGSIRKG
HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCEEEEEECCCCCCCHHHHHHHHHHHHHH
LDKIEAAIQARQVGLAADDDGEE
HHHHHHHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA