Click here to switch to the map view.

The map label for this gene is atpD

Identifier: 119386525

GI number: 119386525

Start: 957857

End: 959281

Strand: Direct

Name: atpD

Synonym: Pden_3818

Alternate gene names: 119386525

Gene position: 957857-959281 (Clockwise)

Preceding gene: 119386524

Following gene: 119386526

Centisome position: 55.36

GC content: 65.05

Gene sequence:

>1425_bases
ATGGCAGAGGCCAATGGAAAAATCACGCAGGTGATCGGCGCCGTCGTCGACGTGCAGTTCGACGGTCAGCTTCCTGCGAT
TCTGAACGCTCTGGAAACCGAGAACAACGGCAAGCGCCTGGTGCTGGAAGTGGCCCAGCACCTGGGCGAGAACACCGTCC
GCACCATCGCCATGGACGCGACCGAAGGTCTGGTCCGTGGCCTGCCGGTCAAGGATACCGGCGGCCCGATCATGGTTCCG
GTCGGCGACGCGACGCTGGGCCGCATCCTGAACGTCGTCGGCGAGCCCGTCGACGAAGGCGGCCCCGTCGAAGCGACCCA
GACCCGTGCCATCCACCAGCAGGCCCCGGATTTCGCCGCCCAGGCGACCGCGTCCGAGATCCTGGTCACCGGCATCAAGG
TCATCGACCTGCTGGCTCCCTATTCCAAGGGCGGCAAGATCGGCCTGTTCGGCGGCGCCGGCGTGGGCAAGACGGTTCTG
ATCATGGAACTGATCAACAACATCGCCAAGGTGCACTCGGGCTATTCGGTGTTCGCGGGCGTCGGTGAACGGACCCGCGA
GGGCAACGACCTTTACCACGAGATGGTGGAATCGGGCGTCATCAAGCCGGACGACCTGTCGAAATCCCAGGTGGCGCTGG
TCTATGGCCAGATGAACGAGCCTCCGGGGGCGCGGATGCGCGTTGCGCTGACCGGCCTGACCGTGGCCGAGCAGTTCCGC
GACGCCACTGGGACCGACGTTCTGTTCTTCGTCGACAACATCTTCCGCTTCACCCAGGCGGGTTCGGAAGTGTCGGCGCT
TCTGGGCCGCATCCCCTCGGCCGTGGGCTACCAGCCGACGCTGGCCACCGACATGGGCGCGATGCAGGAACGCATCACCT
CGACCAAGAACGGCTCGATCACCTCGATCCAGGCCGTCTACGTTCCGGCCGACGACCTTACCGACCCGGCCCCGGCCACG
ACCTTTGCCCACCTCGACGCCACGACCGTGCTGTCGCGCGCGATTTCGGAACTGGGCATCTACCCGGCCGTGGACCCGCT
CGACTCGAACTCGCGGATCCTCGATCCGGCGGTTGTCGGCGAAGAGCATTACCAGGTCGCCCGCGACGTCCAGGGCATCT
TGCAGAAATACAAGTCGCTCCAGGACATCATCGCCATTCTCGGCATGGACGAACTGTCGGAAGAGGACAAGCTGACCGTG
GCCCGCGCCCGGAAGATCCAGCGTTTCCTGTCGCAGCCCTTCGACGTCGCCAAGGTCTTTACCGGCTCGGACGGCGTGCA
GGTGCCGCTGGAGGACACGATCAAGTCGTTCAAGGCGGTCGTGGCCGGCGAATACGACCACCTGCCGGAAGCGGCCTTCT
ACATGGTCGGCGGCATCGAGGATGTGAAAGCCAAGGCTCAGCGTCTCGCCGCTGACGCGGCGTAA

Upstream 100 bases:

>100_bases
TGACGACGGTCTACAACCGCTCACGTCAGGCCGCGATCACCAAGGAACTGATTGAAATCATCTCGGGCGCAGAGGCGCTC
TGACACGTAGAGGTAGAGAC

Downstream 100 bases:

>100_bases
GGGGGCGACATGGCCGACACGATGCAGTTCGACCTCGTCTCGCCGGAACGGAACCTGGTTTCCGTCCCGGTGCGCGAGGT
GCGCCTGCCCGGCGCCGATG

Product: F0F1 ATP synthase subunit beta

Products: NA

Alternate protein names: ATP synthase F1 sector subunit beta; F-ATPase subunit beta

Number of amino acids: Translated: 474; Mature: 473

Protein sequence:

>474_residues
MAEANGKITQVIGAVVDVQFDGQLPAILNALETENNGKRLVLEVAQHLGENTVRTIAMDATEGLVRGLPVKDTGGPIMVP
VGDATLGRILNVVGEPVDEGGPVEATQTRAIHQQAPDFAAQATASEILVTGIKVIDLLAPYSKGGKIGLFGGAGVGKTVL
IMELINNIAKVHSGYSVFAGVGERTREGNDLYHEMVESGVIKPDDLSKSQVALVYGQMNEPPGARMRVALTGLTVAEQFR
DATGTDVLFFVDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGAMQERITSTKNGSITSIQAVYVPADDLTDPAPAT
TFAHLDATTVLSRAISELGIYPAVDPLDSNSRILDPAVVGEEHYQVARDVQGILQKYKSLQDIIAILGMDELSEEDKLTV
ARARKIQRFLSQPFDVAKVFTGSDGVQVPLEDTIKSFKAVVAGEYDHLPEAAFYMVGGIEDVKAKAQRLAADAA

Sequences:

>Translated_474_residues
MAEANGKITQVIGAVVDVQFDGQLPAILNALETENNGKRLVLEVAQHLGENTVRTIAMDATEGLVRGLPVKDTGGPIMVP
VGDATLGRILNVVGEPVDEGGPVEATQTRAIHQQAPDFAAQATASEILVTGIKVIDLLAPYSKGGKIGLFGGAGVGKTVL
IMELINNIAKVHSGYSVFAGVGERTREGNDLYHEMVESGVIKPDDLSKSQVALVYGQMNEPPGARMRVALTGLTVAEQFR
DATGTDVLFFVDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGAMQERITSTKNGSITSIQAVYVPADDLTDPAPAT
TFAHLDATTVLSRAISELGIYPAVDPLDSNSRILDPAVVGEEHYQVARDVQGILQKYKSLQDIIAILGMDELSEEDKLTV
ARARKIQRFLSQPFDVAKVFTGSDGVQVPLEDTIKSFKAVVAGEYDHLPEAAFYMVGGIEDVKAKAQRLAADAA
>Mature_473_residues
AEANGKITQVIGAVVDVQFDGQLPAILNALETENNGKRLVLEVAQHLGENTVRTIAMDATEGLVRGLPVKDTGGPIMVPV
GDATLGRILNVVGEPVDEGGPVEATQTRAIHQQAPDFAAQATASEILVTGIKVIDLLAPYSKGGKIGLFGGAGVGKTVLI
MELINNIAKVHSGYSVFAGVGERTREGNDLYHEMVESGVIKPDDLSKSQVALVYGQMNEPPGARMRVALTGLTVAEQFRD
ATGTDVLFFVDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGAMQERITSTKNGSITSIQAVYVPADDLTDPAPATT
FAHLDATTVLSRAISELGIYPAVDPLDSNSRILDPAVVGEEHYQVARDVQGILQKYKSLQDIIAILGMDELSEEDKLTVA
RARKIQRFLSQPFDVAKVFTGSDGVQVPLEDTIKSFKAVVAGEYDHLPEAAFYMVGGIEDVKAKAQRLAADAA

Specific function: Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits

COG id: COG0055

COG function: function code C; F0F1-type ATP synthase, beta subunit

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ATPase alpha/beta chains family

Homologues:

Organism=Homo sapiens, GI32189394, Length=469, Percent_Identity=78.0383795309168, Blast_Score=738, Evalue=0.0,
Organism=Homo sapiens, GI19913428, Length=371, Percent_Identity=26.6846361185984, Blast_Score=112, Evalue=6e-25,
Organism=Homo sapiens, GI19913426, Length=412, Percent_Identity=25.4854368932039, Blast_Score=110, Evalue=3e-24,
Organism=Homo sapiens, GI19913424, Length=331, Percent_Identity=28.7009063444109, Blast_Score=105, Evalue=7e-23,
Organism=Homo sapiens, GI50345984, Length=295, Percent_Identity=24.0677966101695, Blast_Score=87, Evalue=3e-17,
Organism=Homo sapiens, GI4757810, Length=295, Percent_Identity=24.0677966101695, Blast_Score=87, Evalue=3e-17,
Organism=Escherichia coli, GI1790170, Length=467, Percent_Identity=70.0214132762313, Blast_Score=648, Evalue=0.0,
Organism=Escherichia coli, GI1788251, Length=311, Percent_Identity=29.903536977492, Blast_Score=125, Evalue=5e-30,
Organism=Escherichia coli, GI1790172, Length=437, Percent_Identity=23.7986270022883, Blast_Score=96, Evalue=3e-21,
Organism=Caenorhabditis elegans, GI25144756, Length=471, Percent_Identity=75.583864118896, Blast_Score=722, Evalue=0.0,
Organism=Caenorhabditis elegans, GI17570191, Length=356, Percent_Identity=26.4044943820225, Blast_Score=114, Evalue=1e-25,
Organism=Caenorhabditis elegans, GI17510931, Length=356, Percent_Identity=26.685393258427, Blast_Score=112, Evalue=3e-25,
Organism=Caenorhabditis elegans, GI17565854, Length=313, Percent_Identity=29.3929712460064, Blast_Score=109, Evalue=3e-24,
Organism=Caenorhabditis elegans, GI71988063, Length=322, Percent_Identity=23.6024844720497, Blast_Score=92, Evalue=6e-19,
Organism=Caenorhabditis elegans, GI71988080, Length=295, Percent_Identity=23.728813559322, Blast_Score=92, Evalue=7e-19,
Organism=Caenorhabditis elegans, GI71988074, Length=300, Percent_Identity=21.6666666666667, Blast_Score=70, Evalue=2e-12,
Organism=Saccharomyces cerevisiae, GI6322581, Length=459, Percent_Identity=76.4705882352941, Blast_Score=705, Evalue=0.0,
Organism=Saccharomyces cerevisiae, GI6319603, Length=374, Percent_Identity=27.0053475935829, Blast_Score=117, Evalue=3e-27,
Organism=Saccharomyces cerevisiae, GI6319370, Length=372, Percent_Identity=25.8064516129032, Blast_Score=95, Evalue=2e-20,
Organism=Saccharomyces cerevisiae, GI6320016, Length=264, Percent_Identity=26.8939393939394, Blast_Score=73, Evalue=1e-13,
Organism=Drosophila melanogaster, GI24638766, Length=470, Percent_Identity=79.3617021276596, Blast_Score=751, Evalue=0.0,
Organism=Drosophila melanogaster, GI28574560, Length=468, Percent_Identity=72.8632478632479, Blast_Score=674, Evalue=0.0,
Organism=Drosophila melanogaster, GI24638768, Length=91, Percent_Identity=75.8241758241758, Blast_Score=135, Evalue=8e-32,
Organism=Drosophila melanogaster, GI281361666, Length=359, Percent_Identity=26.7409470752089, Blast_Score=114, Evalue=1e-25,
Organism=Drosophila melanogaster, GI24646341, Length=359, Percent_Identity=26.7409470752089, Blast_Score=114, Evalue=1e-25,
Organism=Drosophila melanogaster, GI17136796, Length=359, Percent_Identity=26.7409470752089, Blast_Score=114, Evalue=1e-25,
Organism=Drosophila melanogaster, GI24583992, Length=348, Percent_Identity=27.5862068965517, Blast_Score=108, Evalue=1e-23,
Organism=Drosophila melanogaster, GI24583988, Length=327, Percent_Identity=29.0519877675841, Blast_Score=108, Evalue=1e-23,
Organism=Drosophila melanogaster, GI24583986, Length=327, Percent_Identity=29.0519877675841, Blast_Score=108, Evalue=1e-23,
Organism=Drosophila melanogaster, GI24583984, Length=327, Percent_Identity=29.0519877675841, Blast_Score=108, Evalue=1e-23,
Organism=Drosophila melanogaster, GI20129479, Length=305, Percent_Identity=28.5245901639344, Blast_Score=106, Evalue=4e-23,
Organism=Drosophila melanogaster, GI24658560, Length=295, Percent_Identity=23.728813559322, Blast_Score=82, Evalue=9e-16,

Paralogues:

None

Copy number: 10836 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. 8,000 Molecules/Cell In: Glucose minimal media [C]

Swissprot (AC and ID): ATPB_PARDP (A1B8P0)

Other databases:

- EMBL:   CP000490
- RefSeq:   YP_917580.1
- ProteinModelPortal:   A1B8P0
- SMR:   A1B8P0
- STRING:   A1B8P0
- GeneID:   4582369
- GenomeReviews:   CP000490_GR
- KEGG:   pde:Pden_3818
- eggNOG:   COG0055
- HOGENOM:   HBG565875
- OMA:   IGQEHYD
- PhylomeDB:   A1B8P0
- ProtClustDB:   PRK09280
- HAMAP:   MF_01347
- InterPro:   IPR020003
- InterPro:   IPR000194
- InterPro:   IPR003593
- InterPro:   IPR005722
- InterPro:   IPR018118
- InterPro:   IPR000793
- InterPro:   IPR004100
- PANTHER:   PTHR15184:SF8
- SMART:   SM00382
- TIGRFAMs:   TIGR01039

Pfam domain/function: PF00006 ATP-synt_ab; PF00306 ATP-synt_ab_C; PF02874 ATP-synt_ab_N; SSF47917 ATPase_a/b_C; SSF50615 ATPase_a/b_N

EC number: =3.6.3.14

Molecular weight: Translated: 50340; Mature: 50209

Theoretical pI: Translated: 4.53; Mature: 4.53

Prosite motif: PS00152 ATPASE_ALPHA_BETA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAEANGKITQVIGAVVDVQFDGQLPAILNALETENNGKRLVLEVAQHLGENTVRTIAMDA
CCCCCCHHHHHHHHHHEEEECCCCHHHHHHHHCCCCCCCHHHHHHHHCCCCHHHEEEECH
TEGLVRGLPVKDTGGPIMVPVGDATLGRILNVVGEPVDEGGPVEATQTRAIHQQAPDFAA
HHHHHHCCCCCCCCCEEEEEECCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCHHH
QATASEILVTGIKVIDLLAPYSKGGKIGLFGGAGVGKTVLIMELINNIAKVHSGYSVFAG
HHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCEEEC
VGERTREGNDLYHEMVESGVIKPDDLSKSQVALVYGQMNEPPGARMRVALTGLTVAEQFR
CCCCCCCCHHHHHHHHHCCCCCCCCCCCCEEEEEEECCCCCCCCEEEEEEEHHHHHHHHH
DATGTDVLFFVDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGAMQERITSTKNGSI
CCCCCCHHHHHHHHHHHHHCCHHHHHHHHHCCHHCCCCCCHHHHHHHHHHHHHCCCCCCE
TSIQAVYVPADDLTDPAPATTFAHLDATTVLSRAISELGIYPAVDPLDSNSRILDPAVVG
EEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHC
EEHYQVARDVQGILQKYKSLQDIIAILGMDELSEEDKLTVARARKIQRFLSQPFDVAKVF
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCCCHHHHHHHHHHHHHHHCCCCCCHHEE
TGSDGVQVPLEDTIKSFKAVVAGEYDHLPEAAFYMVGGIEDVKAKAQRLAADAA
ECCCCCEECHHHHHHHHHHHHCCCCCCCCCHHHHHHCCHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
AEANGKITQVIGAVVDVQFDGQLPAILNALETENNGKRLVLEVAQHLGENTVRTIAMDA
CCCCCHHHHHHHHHHEEEECCCCHHHHHHHHCCCCCCCHHHHHHHHCCCCHHHEEEECH
TEGLVRGLPVKDTGGPIMVPVGDATLGRILNVVGEPVDEGGPVEATQTRAIHQQAPDFAA
HHHHHHCCCCCCCCCEEEEEECCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCHHH
QATASEILVTGIKVIDLLAPYSKGGKIGLFGGAGVGKTVLIMELINNIAKVHSGYSVFAG
HHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCEEEC
VGERTREGNDLYHEMVESGVIKPDDLSKSQVALVYGQMNEPPGARMRVALTGLTVAEQFR
CCCCCCCCHHHHHHHHHCCCCCCCCCCCCEEEEEEECCCCCCCCEEEEEEEHHHHHHHHH
DATGTDVLFFVDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGAMQERITSTKNGSI
CCCCCCHHHHHHHHHHHHHCCHHHHHHHHHCCHHCCCCCCHHHHHHHHHHHHHCCCCCCE
TSIQAVYVPADDLTDPAPATTFAHLDATTVLSRAISELGIYPAVDPLDSNSRILDPAVVG
EEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHC
EEHYQVARDVQGILQKYKSLQDIIAILGMDELSEEDKLTVARARKIQRFLSQPFDVAKVF
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCCCHHHHHHHHHHHHHHHCCCCCCHHEE
TGSDGVQVPLEDTIKSFKAVVAGEYDHLPEAAFYMVGGIEDVKAKAQRLAADAA
ECCCCCEECHHHHHHHHHHHHCCCCCCCCCHHHHHHCCHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA